Incidental Mutation 'R5295:Serpinb6c'
ID |
405372 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Serpinb6c
|
Ensembl Gene |
ENSMUSG00000052180 |
Gene Name |
serine (or cysteine) peptidase inhibitor, clade B, member 6c |
Synonyms |
Spi3C, SPIC, ovalbumin |
MMRRC Submission |
042878-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.153)
|
Stock # |
R5295 (G1)
|
Quality Score |
225 |
Status
|
Not validated
|
Chromosome |
13 |
Chromosomal Location |
34063799-34089691 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to G
at 34077800 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Phenylalanine to Serine
at position 190
(F190S)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000152676
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000110273]
[ENSMUST00000172184]
[ENSMUST00000222216]
|
AlphaFold |
W4VSP4 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000110273
AA Change: F190S
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000105902 Gene: ENSMUSG00000052180 AA Change: F190S
Domain | Start | End | E-Value | Type |
SERPIN
|
13 |
378 |
7.5e-170 |
SMART |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000172184
AA Change: F190S
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000127619 Gene: ENSMUSG00000052180 AA Change: F190S
Domain | Start | End | E-Value | Type |
SERPIN
|
14 |
379 |
7.5e-170 |
SMART |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000222216
AA Change: F190S
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
Meta Mutation Damage Score |
0.9742 |
Coding Region Coverage |
- 1x: 99.3%
- 3x: 98.7%
- 10x: 97.4%
- 20x: 95.7%
|
Validation Efficiency |
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 39 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Alpk2 |
C |
T |
18: 65,438,109 (GRCm39) |
E1095K |
probably damaging |
Het |
Alpl |
T |
C |
4: 137,476,919 (GRCm39) |
T245A |
probably benign |
Het |
Ank2 |
T |
C |
3: 126,825,832 (GRCm39) |
H378R |
probably damaging |
Het |
Arhgef1 |
G |
A |
7: 24,618,777 (GRCm39) |
|
probably null |
Het |
Atp5f1c |
T |
C |
2: 10,073,544 (GRCm39) |
R10G |
possibly damaging |
Het |
Cbln3 |
T |
C |
14: 56,120,920 (GRCm39) |
|
probably null |
Het |
Ccr10 |
C |
T |
11: 101,065,111 (GRCm39) |
V140M |
possibly damaging |
Het |
Cep135 |
T |
A |
5: 76,741,051 (GRCm39) |
H42Q |
possibly damaging |
Het |
Commd5 |
C |
A |
15: 76,785,152 (GRCm39) |
T183K |
possibly damaging |
Het |
Dnajc16 |
T |
C |
4: 141,495,239 (GRCm39) |
E493G |
possibly damaging |
Het |
Ears2 |
T |
C |
7: 121,647,421 (GRCm39) |
R288G |
probably damaging |
Het |
Elovl4 |
G |
A |
9: 83,662,714 (GRCm39) |
P273L |
possibly damaging |
Het |
Fam186b |
T |
A |
15: 99,181,755 (GRCm39) |
I148F |
probably damaging |
Het |
Fryl |
T |
C |
5: 73,270,134 (GRCm39) |
Y79C |
probably damaging |
Het |
Gad1-ps |
A |
G |
10: 99,280,751 (GRCm39) |
|
noncoding transcript |
Het |
Gm14325 |
G |
A |
2: 177,474,777 (GRCm39) |
H102Y |
possibly damaging |
Het |
Ighv1-77 |
T |
A |
12: 115,825,528 (GRCm39) |
S104C |
probably damaging |
Het |
Kcnv1 |
T |
C |
15: 44,977,987 (GRCm39) |
D17G |
unknown |
Het |
Lmtk3 |
G |
A |
7: 45,440,722 (GRCm39) |
D243N |
probably damaging |
Het |
Lrrc7 |
T |
A |
3: 157,876,376 (GRCm39) |
K571N |
probably damaging |
Het |
Lsm7 |
T |
C |
10: 80,690,454 (GRCm39) |
E32G |
probably damaging |
Het |
Ly6f |
A |
G |
15: 75,143,488 (GRCm39) |
Q65R |
probably benign |
Het |
Perm1 |
T |
C |
4: 156,301,975 (GRCm39) |
L173P |
probably benign |
Het |
Plvap |
T |
C |
8: 71,964,314 (GRCm39) |
Q16R |
probably benign |
Het |
Prb1c |
T |
G |
6: 132,338,840 (GRCm39) |
Q126P |
unknown |
Het |
Prl7d1 |
A |
T |
13: 27,893,230 (GRCm39) |
V227D |
probably damaging |
Het |
Prss54 |
T |
C |
8: 96,291,106 (GRCm39) |
T165A |
probably damaging |
Het |
Psrc1 |
A |
G |
3: 108,293,675 (GRCm39) |
I195V |
probably benign |
Het |
Rnf123 |
AT |
ATT |
9: 107,941,202 (GRCm39) |
|
probably null |
Het |
Rnf213 |
A |
T |
11: 119,331,642 (GRCm39) |
T2284S |
probably benign |
Het |
Serpina3c |
T |
C |
12: 104,114,637 (GRCm39) |
E333G |
probably damaging |
Het |
Sfmbt1 |
G |
A |
14: 30,495,986 (GRCm39) |
D90N |
probably damaging |
Het |
Tdh |
T |
C |
14: 63,733,558 (GRCm39) |
Y110C |
probably damaging |
Het |
Tdrd9 |
T |
A |
12: 112,018,346 (GRCm39) |
L1255* |
probably null |
Het |
Trim41 |
TTCCTCCTCCTCCTCCTCCTCCTCCTCC |
TTCCTCCTCCTCCTCCTCCTCCTCC |
11: 48,707,084 (GRCm39) |
|
probably benign |
Het |
Vps51 |
T |
G |
19: 6,121,063 (GRCm39) |
E283D |
probably benign |
Het |
Zbtb2 |
T |
C |
10: 4,318,508 (GRCm39) |
K506R |
probably damaging |
Het |
Zmiz1 |
T |
C |
14: 25,656,771 (GRCm39) |
L800P |
probably damaging |
Het |
Znhit6 |
A |
G |
3: 145,306,248 (GRCm39) |
D251G |
probably benign |
Het |
|
Other mutations in Serpinb6c |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00852:Serpinb6c
|
APN |
13 |
34,081,321 (GRCm39) |
splice site |
probably null |
|
IGL01900:Serpinb6c
|
APN |
13 |
34,064,173 (GRCm39) |
missense |
possibly damaging |
0.88 |
IGL01983:Serpinb6c
|
APN |
13 |
34,081,317 (GRCm39) |
splice site |
probably benign |
|
IGL03357:Serpinb6c
|
APN |
13 |
34,079,369 (GRCm39) |
missense |
probably benign |
0.08 |
R0208:Serpinb6c
|
UTSW |
13 |
34,081,379 (GRCm39) |
missense |
probably benign |
|
R0242:Serpinb6c
|
UTSW |
13 |
34,083,230 (GRCm39) |
splice site |
probably benign |
|
R0632:Serpinb6c
|
UTSW |
13 |
34,064,014 (GRCm39) |
missense |
possibly damaging |
0.86 |
R0669:Serpinb6c
|
UTSW |
13 |
34,083,252 (GRCm39) |
missense |
probably damaging |
0.98 |
R0848:Serpinb6c
|
UTSW |
13 |
34,083,288 (GRCm39) |
missense |
probably damaging |
1.00 |
R1657:Serpinb6c
|
UTSW |
13 |
34,064,209 (GRCm39) |
missense |
probably benign |
0.01 |
R3911:Serpinb6c
|
UTSW |
13 |
34,077,888 (GRCm39) |
missense |
probably benign |
0.00 |
R5135:Serpinb6c
|
UTSW |
13 |
34,064,080 (GRCm39) |
missense |
probably damaging |
1.00 |
R5275:Serpinb6c
|
UTSW |
13 |
34,077,800 (GRCm39) |
missense |
probably damaging |
1.00 |
R5700:Serpinb6c
|
UTSW |
13 |
34,083,291 (GRCm39) |
missense |
probably damaging |
1.00 |
R7490:Serpinb6c
|
UTSW |
13 |
34,077,818 (GRCm39) |
missense |
probably benign |
0.04 |
R7514:Serpinb6c
|
UTSW |
13 |
34,081,386 (GRCm39) |
nonsense |
probably null |
|
R7517:Serpinb6c
|
UTSW |
13 |
34,079,278 (GRCm39) |
missense |
probably damaging |
1.00 |
R7547:Serpinb6c
|
UTSW |
13 |
34,077,875 (GRCm39) |
missense |
possibly damaging |
0.80 |
R7730:Serpinb6c
|
UTSW |
13 |
34,083,292 (GRCm39) |
missense |
probably damaging |
1.00 |
R8121:Serpinb6c
|
UTSW |
13 |
34,064,201 (GRCm39) |
missense |
probably benign |
0.38 |
R8142:Serpinb6c
|
UTSW |
13 |
34,064,096 (GRCm39) |
missense |
probably benign |
0.00 |
R8745:Serpinb6c
|
UTSW |
13 |
34,064,702 (GRCm39) |
missense |
probably benign |
0.06 |
R8855:Serpinb6c
|
UTSW |
13 |
34,083,309 (GRCm39) |
missense |
probably damaging |
1.00 |
R8866:Serpinb6c
|
UTSW |
13 |
34,083,309 (GRCm39) |
missense |
probably damaging |
1.00 |
R9412:Serpinb6c
|
UTSW |
13 |
34,081,371 (GRCm39) |
missense |
probably benign |
0.00 |
R9489:Serpinb6c
|
UTSW |
13 |
34,081,421 (GRCm39) |
missense |
probably null |
0.20 |
R9643:Serpinb6c
|
UTSW |
13 |
34,079,303 (GRCm39) |
missense |
probably benign |
0.00 |
X0063:Serpinb6c
|
UTSW |
13 |
34,064,688 (GRCm39) |
missense |
possibly damaging |
0.76 |
Z1088:Serpinb6c
|
UTSW |
13 |
34,077,906 (GRCm39) |
missense |
probably benign |
0.01 |
Z1088:Serpinb6c
|
UTSW |
13 |
34,077,855 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Predicted Primers |
PCR Primer
(F):5'- AGAACCTCCTCACAGCTGAG -3'
(R):5'- TGCACATATCAGCCACTTTTGTTAG -3'
Sequencing Primer
(F):5'- TCCTCACAGCTGAGAGAGG -3'
(R):5'- GGGGGTCCATTCTCATCCAAAC -3'
|
Posted On |
2016-07-22 |