Mutagenetix > Incidental Mutation

Incidental Mutation 'R5312:Ccdc173'

405625

Institutional Source

Beutler Lab

Gene Symbol

Ccdc173

Ensembl Gene

ENSMUSG00000070883

Gene Name

coiled-coil domain containing 173

Synonyms

4930525K21Rik, 4930578N16Rik

MMRRC Submission

042895-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.073) question?

Stock #

R5312 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

69758033-69789575 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 69787258 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 60 (T60A)

Ref Sequence

ENSEMBL: ENSMUSP00000092548 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028494] [ENSMUST00000094942] [ENSMUST00000112266] [ENSMUST00000151298] [ENSMUST00000180290]

AlphaFold

A0JLY1

Predicted Effect

probably benign
Transcript: ENSMUST00000028494

SMART Domains

Protein: ENSMUSP00000028494
Gene: ENSMUSG00000027088

Domain	Start	End	E-Value	Type
Pfam:Put_Phosphatase	3	239	1.2e-98	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000094942
AA Change: T60A

PolyPhen 2 Score 0.918 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000092548
Gene: ENSMUSG00000070883
AA Change: T60A

Domain	Start	End	E-Value	Type
coiled coil region	47	131	N/A	INTRINSIC
Pfam:TPH	142	475	8.9e-22	PFAM
low complexity region	494	508	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000112266

SMART Domains

Protein: ENSMUSP00000107885
Gene: ENSMUSG00000027088

Domain	Start	End	E-Value	Type
Pfam:Put_Phosphatase	3	239	9.3e-99	PFAM
Pfam:HAD_2	5	128	8.9e-7	PFAM
Pfam:HAD	5	187	3.2e-15	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000128765

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000131100

Predicted Effect

probably benign
Transcript: ENSMUST00000151298

SMART Domains

Protein: ENSMUSP00000118021
Gene: ENSMUSG00000027088

Domain	Start	End	E-Value	Type
Pfam:Put_Phosphatase	3	51	2.9e-20	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000180290

SMART Domains

Protein: ENSMUSP00000136471
Gene: ENSMUSG00000027088

Domain	Start	End	E-Value	Type
Pfam:Put_Phosphatase	3	239	9.3e-99	PFAM
Pfam:HAD_2	5	128	8.9e-7	PFAM
Pfam:HAD	5	187	3.2e-15	PFAM

Meta Mutation Damage Score

0.0719

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 97.0%
20x: 94.2%

Validation Efficiency

100% (60/60)

Allele List at MGI

Other mutations in this stock

Total: 50 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9030624J02Rik	T	C	7: 118,813,576	I629T	probably damaging	Het
Abca15	T	C	7: 120,345,369	V409A	probably damaging	Het
Abtb1	A	G	6: 88,838,258	F297L	probably damaging	Het
Adam22	C	A	5: 8,090,182	G202W	probably damaging	Het
Adgrg3	G	A	8: 95,039,864	V388I	probably benign	Het
Adnp	T	C	2: 168,184,188	T396A	probably benign	Het
Ank2	T	C	3: 126,959,768	Q288R	probably damaging	Het
Bdp1	T	C	13: 100,097,601		probably null	Het
Cdc45	C	T	16: 18,795,897	R205H	probably damaging	Het
Cntnap5c	A	T	17: 58,359,254	E1093V	probably benign	Het
Dmrta1	A	C	4: 89,692,047	N415H	probably damaging	Het
Dnaaf5	T	A	5: 139,152,862	V266E	probably damaging	Het
Dot1l	A	G	10: 80,784,637	Q511R	possibly damaging	Het
Ehmt1	A	G	2: 24,884,195	V201A	probably damaging	Het
Fancg	A	G	4: 43,003,019	F613L	probably benign	Het
Fbxo10	A	T	4: 45,042,036	I731N	possibly damaging	Het
Fchsd1	C	T	18: 37,959,873		probably benign	Het
Gm5155	T	G	7: 17,909,142	H492Q	probably damaging	Het
Gm6614	A	T	6: 141,972,332	F606Y	probably benign	Het
Ighv1-74	A	G	12: 115,802,881	S39P	probably damaging	Het
Kbtbd11	A	G	8: 15,028,589	D396G	possibly damaging	Het
Klc1	A	G	12: 111,795,621	K575R	possibly damaging	Het
Lman1l	A	T	9: 57,611,077	L343Q	probably damaging	Het
Mki67	A	T	7: 135,700,830	V825E	probably damaging	Het
Mus81	T	C	19: 5,483,494	K489R	possibly damaging	Het
Myog	A	G	1: 134,290,326	K91E	probably damaging	Het
Nfil3	A	T	13: 52,967,620	V416E	probably damaging	Het
Nup160	G	T	2: 90,732,832	E1314*	probably null	Het
Nwd2	C	T	5: 63,806,072	Q1000*	probably null	Het
Olfr1277	T	G	2: 111,270,310	D19A	probably benign	Het
Olfr1284	T	C	2: 111,379,834	V278A	possibly damaging	Het
Olfr790	T	A	10: 129,501,514	V210E	probably damaging	Het
Olfr792	A	C	10: 129,541,265	M243L	probably benign	Het
Ppp4r4	T	A	12: 103,606,888		probably null	Het
Pramef25	A	T	4: 143,949,095	I387N	possibly damaging	Het
Psg27	C	A	7: 18,557,033	R415L	probably benign	Het
Ptprr	T	A	10: 116,188,419	S212T	probably benign	Het
Ramp3	T	C	11: 6,674,888	F61L	probably damaging	Het
Rap1gds1	A	G	3: 138,958,628	L322P	probably damaging	Het
Rnf5	A	G	17: 34,601,588	F175S	probably benign	Het
Sema4a	G	A	3: 88,437,036	S636F	probably damaging	Het
Sfrp2	A	G	3: 83,769,401	D193G	probably damaging	Het
Slc26a5	T	C	5: 21,847,260	S24G	probably damaging	Het
Spg21	A	G	9: 65,468,802	I31V	probably benign	Het
Tmem45a2	T	C	16: 57,039,007	D287G	possibly damaging	Het
Utrn	A	T	10: 12,727,769	D627E	probably damaging	Het
Vmn2r103	A	T	17: 19,793,034	N139I	probably benign	Het
Washc5	A	T	15: 59,345,528		probably null	Het
Zfp667	T	C	7: 6,305,467	I378T	probably benign	Het
Zfp949	A	C	9: 88,567,183	T14P	possibly damaging	Het

Other mutations in Ccdc173

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00392:Ccdc173	APN	2	69771984	missense	probably benign
IGL01768:Ccdc173	APN	2	69782127	splice site	probably benign
IGL01801:Ccdc173	APN	2	69776279	splice site	probably benign
R0553:Ccdc173	UTSW	2	69789441	missense	probably damaging	1.00
R1226:Ccdc173	UTSW	2	69787209	missense	possibly damaging	0.63
R1867:Ccdc173	UTSW	2	69781837	splice site	probably null
R4821:Ccdc173	UTSW	2	69782108	missense	possibly damaging	0.76
R5309:Ccdc173	UTSW	2	69787258	missense	possibly damaging	0.92
R5916:Ccdc173	UTSW	2	69789462	start codon destroyed	probably null	0.95
R6072:Ccdc173	UTSW	2	69772058	missense	probably benign	0.31
R6232:Ccdc173	UTSW	2	69772054	missense	possibly damaging	0.64
R6236:Ccdc173	UTSW	2	69758041	splice site	probably null
R6909:Ccdc173	UTSW	2	69781848	splice site	probably null
R7497:Ccdc173	UTSW	2	69758448	missense	probably benign	0.04
R7502:Ccdc173	UTSW	2	69776144	missense	probably benign
R7786:Ccdc173	UTSW	2	69781748	missense	probably damaging	1.00
R7934:Ccdc173	UTSW	2	69782106	nonsense	probably null
R8316:Ccdc173	UTSW	2	69781943	critical splice donor site	probably null
R8905:Ccdc173	UTSW	2	69781760	missense	probably benign	0.01
R8977:Ccdc173	UTSW	2	69787299	missense	possibly damaging	0.55
R9117:Ccdc173	UTSW	2	69781759	nonsense	probably null
R9163:Ccdc173	UTSW	2	69776166	missense	probably benign	0.13

Predicted Primers

PCR Primer
(F):5'- TACCAGGTATAAGGCACTACTCAG -3'
(R):5'- GCCAATCTTAAGTTACACATTTGAGGC -3'

Sequencing Primer
(F):5'- GCACTACTCAGAAGCAGCAGTTATTG -3'
(R):5'- AAGTCAGGTGAACTCTTCCTG -3'

Posted On

2016-07-22