Mutagenetix > Incidental Mutation

Incidental Mutation 'R0497:Lrrc15'

40563

Institutional Source

Beutler Lab

Gene Symbol

Lrrc15

Ensembl Gene

ENSMUSG00000052316

Gene Name

leucine rich repeat containing 15

Synonyms

5430427N11Rik

MMRRC Submission

038693-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0497 (G1)

Quality Score

211

Status

Validated

Chromosome

Chromosomal Location

30088120-30102072 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 30091710 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Glutamic Acid at position 543 (V543E)

Ref Sequence

ENSEMBL: ENSMUSP00000066777 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000064606]

AlphaFold

Q80X72

Predicted Effect

probably damaging
Transcript: ENSMUST00000064606
AA Change: V543E

PolyPhen 2 Score 0.984 (Sensitivity: 0.74; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000066777
Gene: ENSMUSG00000052316
AA Change: V543E

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
LRRNT	24	57	2.98e0	SMART
LRR	76	99	6.97e1	SMART
LRR_TYP	100	123	1.98e-4	SMART
LRR	124	147	4.08e0	SMART
LRR_TYP	148	171	2.4e-3	SMART
LRR_TYP	172	195	1.82e-3	SMART
LRR_TYP	196	219	1.18e-2	SMART
LRR_TYP	220	243	3.16e-3	SMART
LRR_TYP	245	267	3.39e-3	SMART
LRR_TYP	268	291	8.81e-2	SMART
LRR_TYP	292	315	9.5e-7	SMART
LRR_TYP	316	339	6.52e-5	SMART
LRR_TYP	340	363	7.78e-3	SMART
LRR_TYP	364	387	1.03e-2	SMART
LRR	388	411	8.48e0	SMART
LRRCT	423	474	1.11e-3	SMART
low complexity region	485	512	N/A	INTRINSIC
transmembrane domain	537	559	N/A	INTRINSIC

Meta Mutation Damage Score

0.4634

Coding Region Coverage

1x: 99.6%
3x: 98.7%
10x: 96.6%
20x: 93.1%

Validation Efficiency

100% (68/68)

Allele List at MGI

Other mutations in this stock

Total: 67 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aatk	A	C	11: 119,909,606 (GRCm39)	V110G	probably damaging	Het
Adcy6	A	C	15: 98,495,606 (GRCm39)		probably null	Het
Adm	A	G	7: 110,228,328 (GRCm39)	T170A	probably benign	Het
Afap1l2	G	T	19: 56,918,641 (GRCm39)	N171K	probably benign	Het
Aph1b	G	T	9: 66,697,900 (GRCm39)	S112*	probably null	Het
Arhgap23	A	G	11: 97,342,989 (GRCm39)	S424G	probably damaging	Het
Asah2	T	A	19: 32,032,031 (GRCm39)	N46I	probably benign	Het
Braf	G	A	6: 39,617,483 (GRCm39)		probably benign	Het
Brd2	C	T	17: 34,333,334 (GRCm39)	R47Q	probably damaging	Het
C2cd5	A	G	6: 142,957,819 (GRCm39)	V972A	probably benign	Het
Car9	T	A	4: 43,511,881 (GRCm39)	L300H	probably damaging	Het
Chmp3	T	C	6: 71,529,395 (GRCm39)	S20P	probably damaging	Het
Chp1	A	G	2: 119,402,263 (GRCm39)	N79S	possibly damaging	Het
Cnot2	A	T	10: 116,334,260 (GRCm39)	I335N	probably damaging	Het
Cntnap4	T	C	8: 113,296,783 (GRCm39)	V6A	probably benign	Het
Ctcf	T	A	8: 106,401,672 (GRCm39)		probably benign	Het
Dennd1b	A	G	1: 138,967,724 (GRCm39)		probably benign	Het
Dnmbp	A	G	19: 43,845,079 (GRCm39)		probably benign	Het
Eef2	T	C	10: 81,017,420 (GRCm39)	F782L	probably benign	Het
Eogt	T	A	6: 97,112,194 (GRCm39)	Y153F	probably benign	Het
Fam81a	G	T	9: 70,003,401 (GRCm39)	Q237K	possibly damaging	Het
Fat2	T	A	11: 55,174,228 (GRCm39)	T2162S	probably benign	Het
Fcgbpl1	T	A	7: 27,846,890 (GRCm39)	C1158S	probably damaging	Het
Gas6	T	C	8: 13,520,387 (GRCm39)	I434V	possibly damaging	Het
Gm42417	A	T	1: 36,571,248 (GRCm39)	L77Q	probably damaging	Het
Grik3	A	T	4: 125,517,303 (GRCm39)	N49Y	possibly damaging	Het
Gucy2e	A	T	11: 69,114,985 (GRCm39)	V974E	probably damaging	Het
Helz2	A	G	2: 180,871,449 (GRCm39)	V2721A	probably damaging	Het
Klhl6	GT	G	16: 19,775,716 (GRCm39)	279	probably null	Het
Krt73	A	G	15: 101,710,665 (GRCm39)	L23P	probably damaging	Het
L3mbtl3	T	C	10: 26,158,772 (GRCm39)		probably benign	Het
Med13	G	A	11: 86,167,809 (GRCm39)		probably benign	Het
Med25	T	C	7: 44,541,524 (GRCm39)	D60G	probably damaging	Het
Mgam	T	A	6: 40,641,826 (GRCm39)	Y560N	probably damaging	Het
Mlkl	A	G	8: 112,054,505 (GRCm39)	Y211H	probably damaging	Het
Msl2	A	G	9: 100,978,493 (GRCm39)	N289S	probably benign	Het
Nwd2	G	T	5: 63,963,686 (GRCm39)	W1090L	probably damaging	Het
Omt2b	T	C	9: 78,235,513 (GRCm39)		probably benign	Het
Or4k37	A	G	2: 111,159,175 (GRCm39)	D137G	probably benign	Het
Pald1	A	G	10: 61,177,094 (GRCm39)	L652P	probably damaging	Het
Pard3b	T	A	1: 62,479,167 (GRCm39)		probably null	Het
Prdm15	G	A	16: 97,595,534 (GRCm39)	T1098I	possibly damaging	Het
Rock2	A	G	12: 17,004,954 (GRCm39)	T436A	probably benign	Het
Sema4c	A	T	1: 36,588,689 (GRCm39)	D812E	probably benign	Het
Sla	A	T	15: 66,664,098 (GRCm39)	I91K	probably benign	Het
Slc22a16	T	G	10: 40,460,963 (GRCm39)	M255R	probably damaging	Het
Slc49a4	A	T	16: 35,555,974 (GRCm39)	V162D	probably benign	Het
Smg8	C	T	11: 86,976,910 (GRCm39)	D224N	possibly damaging	Het
Spdef	A	T	17: 27,937,032 (GRCm39)	D190E	probably benign	Het
Taok1	A	G	11: 77,464,630 (GRCm39)	I152T	probably damaging	Het
Tmem220	A	G	11: 66,916,748 (GRCm39)	D36G	probably damaging	Het
Tmem235	A	C	11: 117,755,177 (GRCm39)	I210L	probably benign	Het
Tmem266	C	T	9: 55,288,168 (GRCm39)		probably null	Het
Tmprss12	A	G	15: 100,178,920 (GRCm39)		probably benign	Het
Trim32	G	A	4: 65,531,491 (GRCm39)	R16Q	probably damaging	Het
Usp38	T	A	8: 81,711,053 (GRCm39)		probably benign	Het
Usp44	C	T	10: 93,682,668 (GRCm39)	P373S	possibly damaging	Het
Vmn1r209	G	T	13: 22,990,118 (GRCm39)	Q191K	probably damaging	Het
Vmn1r70	T	C	7: 10,367,953 (GRCm39)	I147T	probably benign	Het
Vmn2r107	T	A	17: 20,595,394 (GRCm39)	I649N	probably damaging	Het
Vmn2r12	A	T	5: 109,239,755 (GRCm39)	Y269*	probably null	Het
Zan	C	T	5: 137,410,938 (GRCm39)		probably benign	Het
Zfp616	G	T	11: 73,974,306 (GRCm39)	V192L	probably benign	Het
Zfp644	A	T	5: 106,786,199 (GRCm39)	V116D	probably damaging	Het
Zgrf1	T	C	3: 127,378,299 (GRCm39)		probably benign	Het
Zhx3	A	T	2: 160,621,914 (GRCm39)	L751*	probably null	Het
Znfx1	T	A	2: 166,897,331 (GRCm39)	Q531L	probably benign	Het

Other mutations in Lrrc15

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00495:Lrrc15	APN	16	30,092,848 (GRCm39)	missense	possibly damaging	0.90
IGL01720:Lrrc15	APN	16	30,092,138 (GRCm39)	missense	probably benign	0.19
R0138:Lrrc15	UTSW	16	30,092,267 (GRCm39)	missense	possibly damaging	0.63
R0317:Lrrc15	UTSW	16	30,092,561 (GRCm39)	missense	probably benign
R0528:Lrrc15	UTSW	16	30,092,566 (GRCm39)	missense	probably damaging	0.99
R1122:Lrrc15	UTSW	16	30,092,719 (GRCm39)	missense	probably damaging	1.00
R1950:Lrrc15	UTSW	16	30,092,649 (GRCm39)	missense	probably benign	0.21
R2898:Lrrc15	UTSW	16	30,092,604 (GRCm39)	missense	probably benign	0.01
R4272:Lrrc15	UTSW	16	30,092,673 (GRCm39)	missense	probably benign	0.06
R4839:Lrrc15	UTSW	16	30,093,086 (GRCm39)	missense	probably benign	0.00
R5091:Lrrc15	UTSW	16	30,092,172 (GRCm39)	missense	probably damaging	1.00
R5369:Lrrc15	UTSW	16	30,091,722 (GRCm39)	missense	possibly damaging	0.93
R6076:Lrrc15	UTSW	16	30,091,806 (GRCm39)	missense	probably benign	0.25
R6133:Lrrc15	UTSW	16	30,093,054 (GRCm39)	missense	probably benign	0.11
R7017:Lrrc15	UTSW	16	30,091,780 (GRCm39)	missense	probably benign	0.00
R9217:Lrrc15	UTSW	16	30,092,415 (GRCm39)	missense	probably damaging	1.00
R9507:Lrrc15	UTSW	16	30,092,829 (GRCm39)	missense	probably damaging	1.00
R9533:Lrrc15	UTSW	16	30,092,637 (GRCm39)	missense	possibly damaging	0.67
R9562:Lrrc15	UTSW	16	30,093,016 (GRCm39)	missense	probably damaging	1.00
R9565:Lrrc15	UTSW	16	30,093,016 (GRCm39)	missense	probably damaging	1.00
R9616:Lrrc15	UTSW	16	30,092,517 (GRCm39)	missense	probably damaging	1.00
R9641:Lrrc15	UTSW	16	30,093,006 (GRCm39)	missense	probably damaging	1.00
R9755:Lrrc15	UTSW	16	30,093,147 (GRCm39)	missense	possibly damaging	0.95
Z1176:Lrrc15	UTSW	16	30,093,070 (GRCm39)	missense	probably benign	0.31

Predicted Primers

PCR Primer
(F):5'- AAAGGTCCTGAAACACCTGCTTCTC -3'
(R):5'- GACAGACACTCTTCCAGTGTGTTCC -3'

Sequencing Primer
(F):5'- GGAAGTTGAATGATCACCTTCTCG -3'
(R):5'- AGTGTGTTCCAGTCCAGC -3'

Posted On

2013-05-23