Incidental Mutation 'R5318:Dtx2'
| ID |
405913 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Dtx2
|
| Ensembl Gene |
ENSMUSG00000004947 |
| Gene Name |
deltex 2, E3 ubiquitin ligase |
| Synonyms |
2610524D08Rik |
| MMRRC Submission |
042901-MU
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R5318 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
5 |
| Chromosomal Location |
136023654-136061726 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to A
at 136040954 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Serine to Threonine
at position 120
(S120T)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000115122
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000005072]
[ENSMUST00000111142]
[ENSMUST00000111144]
[ENSMUST00000111145]
[ENSMUST00000125827]
[ENSMUST00000130345]
[ENSMUST00000199239]
|
| AlphaFold |
Q8R3P2 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000005072
AA Change: S120T
PolyPhen 2
Score 0.916 (Sensitivity: 0.81; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000005072
Gene: ENSMUSG00000004947
AA Change: S120T
| Domain | Start | End | E-Value | Type |
|---|
|
WWE
|
17 |
105 |
2.02e-31 |
SMART |
|
WWE
|
107 |
182 |
6.98e-26 |
SMART |
|
low complexity region
|
281 |
318 |
N/A |
INTRINSIC |
|
RING
|
408 |
468 |
2.49e-5 |
SMART |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000111142
AA Change: S120T
PolyPhen 2
Score 0.916 (Sensitivity: 0.81; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000106772
Gene: ENSMUSG00000004947
AA Change: S120T
| Domain | Start | End | E-Value | Type |
|---|
|
WWE
|
17 |
105 |
2.02e-31 |
SMART |
|
WWE
|
107 |
182 |
6.98e-26 |
SMART |
|
low complexity region
|
281 |
318 |
N/A |
INTRINSIC |
|
RING
|
409 |
469 |
2.49e-5 |
SMART |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000111144
AA Change: S120T
PolyPhen 2
Score 0.916 (Sensitivity: 0.81; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000106774
Gene: ENSMUSG00000004947
AA Change: S120T
| Domain | Start | End | E-Value | Type |
|---|
|
WWE
|
17 |
105 |
2.02e-31 |
SMART |
|
WWE
|
107 |
182 |
6.98e-26 |
SMART |
|
low complexity region
|
281 |
318 |
N/A |
INTRINSIC |
|
RING
|
363 |
423 |
2.49e-5 |
SMART |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000111145
AA Change: S120T
PolyPhen 2
Score 0.916 (Sensitivity: 0.81; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000106775
Gene: ENSMUSG00000004947
AA Change: S120T
| Domain | Start | End | E-Value | Type |
|---|
|
WWE
|
17 |
105 |
2.02e-31 |
SMART |
|
WWE
|
107 |
182 |
6.98e-26 |
SMART |
|
low complexity region
|
281 |
318 |
N/A |
INTRINSIC |
|
RING
|
363 |
423 |
2.49e-5 |
SMART |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000125827
AA Change: S120T
PolyPhen 2
Score 0.916 (Sensitivity: 0.81; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000115122
Gene: ENSMUSG00000004947
AA Change: S120T
| Domain | Start | End | E-Value | Type |
|---|
|
WWE
|
17 |
105 |
2.02e-31 |
SMART |
|
WWE
|
107 |
182 |
6.98e-26 |
SMART |
|
low complexity region
|
281 |
318 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000130345
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000199239
AA Change: S120T
PolyPhen 2
Score 0.021 (Sensitivity: 0.95; Specificity: 0.80)
|
| SMART Domains |
Protein: ENSMUSP00000142472
Gene: ENSMUSG00000004947
AA Change: S120T
| Domain | Start | End | E-Value | Type |
|---|
|
WWE
|
17 |
105 |
8.4e-34 |
SMART |
|
WWE
|
107 |
151 |
3.9e-4 |
SMART |
|
| Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.4%
- 10x: 96.5%
- 20x: 92.7%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] DTX2 functions as an E3 ubiquitin ligase (Takeyama et al., 2003 [PubMed 12670957]).[supplied by OMIM, Nov 2009]
PHENOTYPE: Mice homozygous for a knock-out allele are viable and overtly normal with no detectable abnormalities in T or B cell development. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 53 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 2300002M23Rik |
G |
A |
17: 35,878,883 (GRCm39) |
E74K |
possibly damaging |
Het |
| Anapc15 |
C |
T |
7: 101,547,810 (GRCm39) |
P68L |
probably damaging |
Het |
| Ankfn1 |
A |
G |
11: 89,282,754 (GRCm39) |
S298P |
probably damaging |
Het |
| Arfgef2 |
A |
C |
2: 166,715,891 (GRCm39) |
K1393N |
probably damaging |
Het |
| Atp4a |
T |
A |
7: 30,414,754 (GRCm39) |
V181E |
probably damaging |
Het |
| Bin3 |
A |
G |
14: 70,371,961 (GRCm39) |
D134G |
possibly damaging |
Het |
| Cabs1 |
A |
G |
5: 88,128,425 (GRCm39) |
T359A |
possibly damaging |
Het |
| Cblb |
A |
T |
16: 52,006,561 (GRCm39) |
K754N |
possibly damaging |
Het |
| Ccdc153 |
A |
T |
9: 44,157,062 (GRCm39) |
R135* |
probably null |
Het |
| Cel |
T |
C |
2: 28,447,720 (GRCm39) |
E398G |
possibly damaging |
Het |
| Clip1 |
G |
A |
5: 123,751,147 (GRCm39) |
|
probably benign |
Het |
| Dnase2b |
C |
A |
3: 146,288,210 (GRCm39) |
R295L |
probably benign |
Het |
| Dnm3 |
G |
A |
1: 161,839,376 (GRCm39) |
Q194* |
probably null |
Het |
| Fat3 |
A |
T |
9: 16,287,925 (GRCm39) |
S533T |
probably damaging |
Het |
| Foxred2 |
T |
C |
15: 77,836,598 (GRCm39) |
I306V |
probably benign |
Het |
| Gdpd5 |
A |
T |
7: 99,102,234 (GRCm39) |
T278S |
probably benign |
Het |
| Gli2 |
T |
A |
1: 118,772,200 (GRCm39) |
T502S |
probably damaging |
Het |
| Gm21830 |
A |
T |
2: 67,263,158 (GRCm39) |
|
probably null |
Het |
| Gm5617 |
T |
A |
9: 48,407,211 (GRCm39) |
I115N |
possibly damaging |
Het |
| Gpr75 |
G |
T |
11: 30,842,459 (GRCm39) |
A455S |
probably benign |
Het |
| Grik3 |
A |
G |
4: 125,587,929 (GRCm39) |
E683G |
probably damaging |
Het |
| Grin2b |
T |
C |
6: 135,710,916 (GRCm39) |
I877V |
probably damaging |
Het |
| Gsg1l2 |
G |
T |
11: 67,673,347 (GRCm39) |
C109F |
possibly damaging |
Het |
| H2-Q4 |
G |
A |
17: 35,602,287 (GRCm39) |
V341I |
possibly damaging |
Het |
| Hjurp |
GT |
GTT |
1: 88,194,246 (GRCm39) |
|
probably null |
Het |
| Kif5c |
A |
G |
2: 49,561,840 (GRCm39) |
K68R |
probably benign |
Het |
| Lct |
T |
A |
1: 128,232,109 (GRCm39) |
H580L |
probably damaging |
Het |
| Lrrtm4 |
A |
G |
6: 79,999,495 (GRCm39) |
I302M |
probably damaging |
Het |
| Mef2b |
A |
T |
8: 70,619,493 (GRCm39) |
R228W |
probably damaging |
Het |
| Mtus2 |
T |
A |
5: 148,013,382 (GRCm39) |
D58E |
probably benign |
Het |
| Myh15 |
T |
G |
16: 48,930,834 (GRCm39) |
S603A |
probably damaging |
Het |
| Or1x2 |
T |
C |
11: 50,918,420 (GRCm39) |
V197A |
probably benign |
Het |
| Or8d1 |
C |
T |
9: 38,766,744 (GRCm39) |
P129S |
probably damaging |
Het |
| Or8s2 |
A |
G |
15: 98,276,523 (GRCm39) |
I156T |
possibly damaging |
Het |
| P2rx4 |
G |
A |
5: 122,857,211 (GRCm39) |
C149Y |
probably null |
Het |
| Pramel51 |
A |
T |
12: 88,142,998 (GRCm39) |
C207S |
probably benign |
Het |
| Proca1 |
T |
A |
11: 78,092,683 (GRCm39) |
V43E |
possibly damaging |
Het |
| Rftn1 |
G |
T |
17: 50,301,486 (GRCm39) |
N454K |
probably benign |
Het |
| Rrp15 |
T |
C |
1: 186,453,743 (GRCm39) |
T235A |
probably benign |
Het |
| Serpina6 |
T |
C |
12: 103,620,221 (GRCm39) |
E176G |
possibly damaging |
Het |
| Shprh |
T |
G |
10: 11,042,301 (GRCm39) |
I761M |
probably benign |
Het |
| Smg1 |
A |
T |
7: 117,759,427 (GRCm39) |
|
probably benign |
Het |
| Snupn |
T |
C |
9: 56,864,345 (GRCm39) |
S15P |
probably damaging |
Het |
| Tbc1d15 |
A |
T |
10: 115,044,874 (GRCm39) |
Y509* |
probably null |
Het |
| Tcf4 |
T |
C |
18: 69,598,501 (GRCm39) |
V72A |
probably benign |
Het |
| Tdrd3 |
T |
C |
14: 87,714,899 (GRCm39) |
|
probably null |
Het |
| Tm9sf4 |
T |
A |
2: 153,029,576 (GRCm39) |
V175D |
probably benign |
Het |
| Vmn1r201 |
T |
C |
13: 22,659,092 (GRCm39) |
L102P |
probably damaging |
Het |
| Wdfy4 |
T |
A |
14: 32,800,300 (GRCm39) |
N1788I |
possibly damaging |
Het |
| Xpc |
A |
C |
6: 91,469,992 (GRCm39) |
V744G |
probably damaging |
Het |
| Xrcc6 |
T |
C |
15: 81,921,708 (GRCm39) |
F178L |
probably damaging |
Het |
| Zbed6 |
A |
G |
1: 133,585,853 (GRCm39) |
S495P |
possibly damaging |
Het |
| Zfyve26 |
A |
G |
12: 79,317,624 (GRCm39) |
V1196A |
probably benign |
Het |
|
| Other mutations in Dtx2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01077:Dtx2
|
APN |
5 |
136,058,057 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
IGL01536:Dtx2
|
APN |
5 |
136,038,940 (GRCm39) |
utr 5 prime |
probably benign |
|
|
IGL01584:Dtx2
|
APN |
5 |
136,055,420 (GRCm39) |
missense |
possibly damaging |
0.49 |
|
IGL01782:Dtx2
|
APN |
5 |
136,038,981 (GRCm39) |
nonsense |
probably null |
|
|
IGL03091:Dtx2
|
APN |
5 |
136,041,228 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0499:Dtx2
|
UTSW |
5 |
136,057,957 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0580:Dtx2
|
UTSW |
5 |
136,061,180 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1988:Dtx2
|
UTSW |
5 |
136,061,147 (GRCm39) |
nonsense |
probably null |
|
|
R2062:Dtx2
|
UTSW |
5 |
136,059,431 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2063:Dtx2
|
UTSW |
5 |
136,059,431 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2064:Dtx2
|
UTSW |
5 |
136,059,431 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2065:Dtx2
|
UTSW |
5 |
136,059,431 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2068:Dtx2
|
UTSW |
5 |
136,059,431 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2108:Dtx2
|
UTSW |
5 |
136,059,431 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2110:Dtx2
|
UTSW |
5 |
136,059,431 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2111:Dtx2
|
UTSW |
5 |
136,059,431 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2130:Dtx2
|
UTSW |
5 |
136,040,894 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R2146:Dtx2
|
UTSW |
5 |
136,059,464 (GRCm39) |
missense |
probably benign |
0.21 |
|
R3108:Dtx2
|
UTSW |
5 |
136,050,670 (GRCm39) |
missense |
probably benign |
0.01 |
|
R3421:Dtx2
|
UTSW |
5 |
136,041,332 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4467:Dtx2
|
UTSW |
5 |
136,040,930 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4741:Dtx2
|
UTSW |
5 |
136,055,371 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5083:Dtx2
|
UTSW |
5 |
136,041,044 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5705:Dtx2
|
UTSW |
5 |
136,039,149 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5964:Dtx2
|
UTSW |
5 |
136,052,553 (GRCm39) |
missense |
probably benign |
0.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- TGGTGTCACATGGTCACACAC -3'
(R):5'- AGTCACTGGGTAAACTGGCC -3'
Sequencing Primer
(F):5'- CATACCCACGGAAACATGGGTG -3'
(R):5'- TGGGTAAACTGGCCCCACTTG -3'
|
| Posted On |
2016-07-22 |
Incidental Mutation