Mutagenetix > Incidental Mutation

Incidental Mutation 'R4681:Mtcl1'

406134

Institutional Source

Beutler Lab

Gene Symbol

Mtcl1

Ensembl Gene

ENSMUSG00000052105

Gene Name

microtubule crosslinking factor 1

Synonyms

1110012J17Rik, Soga2, t8219b25

MMRRC Submission

042015-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.126) question?

Stock #

R4681 (G1)

Quality Score

65.5

Status

Validated

Chromosome

Chromosomal Location

66643977-66756745 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 66756139 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 68 (T68A)

Ref Sequence

ENSEMBL: ENSMUSP00000094894 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000086693] [ENSMUST00000097291]

AlphaFold

Q3UHU5

Predicted Effect

unknown
Transcript: ENSMUST00000086693
AA Change: T68A

SMART Domains

Protein: ENSMUSP00000083899
Gene: ENSMUSG00000052105
AA Change: T68A

Domain	Start	End	E-Value	Type
low complexity region	23	42	N/A	INTRINSIC
low complexity region	54	98	N/A	INTRINSIC
low complexity region	99	120	N/A	INTRINSIC
low complexity region	127	132	N/A	INTRINSIC
low complexity region	166	183	N/A	INTRINSIC
low complexity region	240	259	N/A	INTRINSIC
low complexity region	273	290	N/A	INTRINSIC
SCOP:d1fxkc_	332	466	3e-7	SMART
Blast:BRLZ	339	362	1e-5	BLAST
Pfam:DUF3166	493	587	1.8e-34	PFAM
Pfam:DUF3166	622	714	3.8e-39	PFAM
low complexity region	843	859	N/A	INTRINSIC
low complexity region	896	910	N/A	INTRINSIC
low complexity region	962	973	N/A	INTRINSIC
low complexity region	1049	1062	N/A	INTRINSIC
coiled coil region	1120	1159	N/A	INTRINSIC
Pfam:DUF4482	1220	1344	3e-40	PFAM
low complexity region	1464	1476	N/A	INTRINSIC
low complexity region	1672	1681	N/A	INTRINSIC
low complexity region	1912	1924	N/A	INTRINSIC
low complexity region	1931	1943	N/A	INTRINSIC

Predicted Effect

unknown
Transcript: ENSMUST00000097291
AA Change: T68A

SMART Domains

Protein: ENSMUSP00000094894
Gene: ENSMUSG00000052105
AA Change: T68A

Domain	Start	End	E-Value	Type
low complexity region	23	42	N/A	INTRINSIC
low complexity region	54	98	N/A	INTRINSIC
low complexity region	99	120	N/A	INTRINSIC
low complexity region	127	132	N/A	INTRINSIC
low complexity region	166	183	N/A	INTRINSIC
low complexity region	240	259	N/A	INTRINSIC
low complexity region	273	290	N/A	INTRINSIC
SCOP:d1fxkc_	332	466	3e-7	SMART
Blast:BRLZ	339	362	1e-5	BLAST
Pfam:DUF3166	492	588	1.8e-43	PFAM
Pfam:DUF3166	621	716	5e-19	PFAM
low complexity region	843	859	N/A	INTRINSIC
low complexity region	896	910	N/A	INTRINSIC
low complexity region	962	973	N/A	INTRINSIC
low complexity region	1049	1062	N/A	INTRINSIC
coiled coil region	1120	1159	N/A	INTRINSIC
Pfam:DUF4482	1220	1392	3.9e-49	PFAM
low complexity region	1464	1476	N/A	INTRINSIC
low complexity region	1672	1681	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000127259

Meta Mutation Damage Score

0.0869

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.8%
20x: 94.1%

Validation Efficiency

100% (59/59)

MGI Phenotype

PHENOTYPE: Global or Purkinje cell-specific homozygous knockout affects Purkinje cell axon and dendrite morphology, resulting in abnormal motor function. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ahctf1	G	T	1: 179,580,361 (GRCm39)	T1947K	probably benign	Het
Ak9	A	C	10: 41,303,234 (GRCm39)	K1669T	unknown	Het
Atp4b	T	C	8: 13,439,700 (GRCm39)	E174G	probably benign	Het
Bcl6	A	G	16: 23,787,203 (GRCm39)		probably benign	Het
Brca2	C	G	5: 150,475,863 (GRCm39)		probably null	Het
Btnl4	A	T	17: 34,689,075 (GRCm39)		probably null	Het
C4a	G	T	17: 35,036,075 (GRCm39)		noncoding transcript	Het
Cab39l	A	G	14: 59,737,054 (GRCm39)	D58G	probably benign	Het
Cacna2d3	A	T	14: 29,015,092 (GRCm39)	M100K	probably damaging	Het
Car2	T	A	3: 14,960,624 (GRCm39)	Y127*	probably null	Het
Cdhr1	T	C	14: 36,818,194 (GRCm39)	N86S	probably benign	Het
Celsr3	A	G	9: 108,704,953 (GRCm39)	I479V	possibly damaging	Het
Cfhr1	A	T	1: 139,478,667 (GRCm39)	Y53*	probably null	Het
Cgrrf1	A	G	14: 47,091,283 (GRCm39)	E269G	probably benign	Het
Cimap3	C	A	3: 105,905,701 (GRCm39)	G148C	probably damaging	Het
Clcn7	A	T	17: 25,376,935 (GRCm39)	H636L	probably damaging	Het
Cox10	T	G	11: 63,867,277 (GRCm39)	T240P	possibly damaging	Het
Crybg2	CTTCCAGAGCCATGGACCCATCTTTTCCA	CTTCCA	4: 133,800,029 (GRCm39)		probably null	Het
Dbt	A	G	3: 116,326,963 (GRCm39)	D104G	probably damaging	Het
F730035P03Rik	T	C	7: 99,429,425 (GRCm39)		noncoding transcript	Het
Fabp3	C	T	4: 130,206,180 (GRCm39)	T57I	probably benign	Het
Fam186b	T	C	15: 99,178,771 (GRCm39)	K185R	probably benign	Het
Fat4	T	C	3: 38,941,491 (GRCm39)	L128P	probably damaging	Het
Gbf1	A	T	19: 46,268,989 (GRCm39)	Q1381L	probably benign	Het
Glp2r	C	T	11: 67,621,453 (GRCm39)		probably null	Het
Gm18025	A	G	12: 34,340,884 (GRCm39)	S70P	probably benign	Het
Gpr45	A	G	1: 43,072,068 (GRCm39)	D237G	probably benign	Het
Hectd4	A	T	5: 121,441,678 (GRCm39)	L1213F	possibly damaging	Het
Hydin	T	C	8: 111,233,103 (GRCm39)	V1734A	possibly damaging	Het
Kcnh5	A	T	12: 75,054,397 (GRCm39)	S516T	probably benign	Het
Liph	A	C	16: 21,802,777 (GRCm39)	S97R	probably benign	Het
Nsun7	T	A	5: 66,418,542 (GRCm39)	S91T	probably benign	Het
Or5an10	T	C	19: 12,276,413 (GRCm39)	T28A	probably benign	Het
Or6c75	A	G	10: 129,337,433 (GRCm39)	I227V	probably damaging	Het
Pcdh20	A	T	14: 88,705,052 (GRCm39)	N749K	probably damaging	Het
Pot1b	A	T	17: 55,961,831 (GRCm39)	D582E	probably benign	Het
Pxdn	T	C	12: 30,062,325 (GRCm39)	I1212T	probably benign	Het
Ramp1	T	C	1: 91,124,511 (GRCm39)	V24A	probably benign	Het
S100a8	T	A	3: 90,576,890 (GRCm39)	D14E	probably benign	Het
Stk31	A	G	6: 49,414,369 (GRCm39)	D501G	probably benign	Het
Tbc1d19	G	A	5: 54,029,595 (GRCm39)	V319M	probably damaging	Het
Tbcel	G	T	9: 42,361,268 (GRCm39)	H93Q	probably damaging	Het
Traf3ip2	C	T	10: 39,515,256 (GRCm39)	P345S	possibly damaging	Het
Trpm8	A	T	1: 88,312,427 (GRCm39)	I1103F	possibly damaging	Het
Ttc19	T	A	11: 62,199,917 (GRCm39)	C112*	probably null	Het
Unc5c	T	G	3: 141,474,374 (GRCm39)		probably null	Het
Urb1	A	T	16: 90,601,425 (GRCm39)	H115Q	probably damaging	Het
Vmn2r15	T	A	5: 109,434,488 (GRCm39)	I739F	probably damaging	Het
Zcchc14	G	T	8: 122,335,339 (GRCm39)		probably benign	Het
Zfp408	G	A	2: 91,476,131 (GRCm39)	P341L	probably damaging	Het
Zfp638	G	A	6: 83,958,719 (GRCm39)	V1166M	possibly damaging	Het

Other mutations in Mtcl1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00092:Mtcl1	APN	17	66,651,314 (GRCm39)	missense	probably benign	0.00
IGL01774:Mtcl1	APN	17	66,692,880 (GRCm39)	missense	probably damaging	1.00
IGL01918:Mtcl1	APN	17	66,675,263 (GRCm39)	missense	possibly damaging	0.47
IGL02000:Mtcl1	APN	17	66,661,185 (GRCm39)	missense	probably benign	0.19
IGL02074:Mtcl1	APN	17	66,673,463 (GRCm39)	missense	possibly damaging	0.68
IGL02338:Mtcl1	APN	17	66,686,965 (GRCm39)	missense	probably damaging	1.00
IGL02597:Mtcl1	APN	17	66,645,016 (GRCm39)	missense	probably benign
IGL03034:Mtcl1	APN	17	66,651,193 (GRCm39)	missense	probably damaging	1.00
IGL03120:Mtcl1	APN	17	66,686,378 (GRCm39)	missense	probably damaging	0.96
IGL03184:Mtcl1	APN	17	66,661,209 (GRCm39)	missense	probably benign	0.01
IGL03240:Mtcl1	APN	17	66,645,014 (GRCm39)	missense	probably damaging	1.00
IGL03294:Mtcl1	APN	17	66,645,014 (GRCm39)	missense	probably damaging	1.00
IGL03332:Mtcl1	APN	17	66,645,014 (GRCm39)	missense	probably damaging	1.00
PIT4378001:Mtcl1	UTSW	17	66,745,274 (GRCm39)	missense	probably damaging	1.00
PIT4520001:Mtcl1	UTSW	17	66,692,907 (GRCm39)	missense	possibly damaging	0.48
R0110:Mtcl1	UTSW	17	66,665,109 (GRCm39)	missense	possibly damaging	0.51
R0113:Mtcl1	UTSW	17	66,661,237 (GRCm39)	missense	possibly damaging	0.52
R0321:Mtcl1	UTSW	17	66,686,426 (GRCm39)	missense	probably damaging	1.00
R0366:Mtcl1	UTSW	17	66,645,124 (GRCm39)	missense	probably damaging	1.00
R0629:Mtcl1	UTSW	17	66,645,137 (GRCm39)	missense	possibly damaging	0.89
R1466:Mtcl1	UTSW	17	66,687,430 (GRCm39)	missense	probably damaging	1.00
R1466:Mtcl1	UTSW	17	66,687,430 (GRCm39)	missense	probably damaging	1.00
R1467:Mtcl1	UTSW	17	66,755,322 (GRCm39)	missense	probably damaging	1.00
R1467:Mtcl1	UTSW	17	66,755,322 (GRCm39)	missense	probably damaging	1.00
R1471:Mtcl1	UTSW	17	66,686,143 (GRCm39)	missense	probably damaging	0.96
R1650:Mtcl1	UTSW	17	66,692,871 (GRCm39)	missense	probably damaging	1.00
R1754:Mtcl1	UTSW	17	66,687,178 (GRCm39)	missense	probably damaging	1.00
R1855:Mtcl1	UTSW	17	66,686,509 (GRCm39)	missense	probably benign
R1882:Mtcl1	UTSW	17	66,686,315 (GRCm39)	missense	probably benign	0.01
R1935:Mtcl1	UTSW	17	66,686,409 (GRCm39)	missense	probably benign	0.10
R2063:Mtcl1	UTSW	17	66,653,350 (GRCm39)	missense	probably damaging	1.00
R2132:Mtcl1	UTSW	17	66,650,618 (GRCm39)	missense	probably benign	0.04
R2197:Mtcl1	UTSW	17	66,673,427 (GRCm39)	missense	probably benign
R3196:Mtcl1	UTSW	17	66,650,829 (GRCm39)	missense	probably benign	0.07
R3877:Mtcl1	UTSW	17	66,649,949 (GRCm39)	missense	probably damaging	1.00
R4116:Mtcl1	UTSW	17	66,673,476 (GRCm39)	missense	probably benign
R4204:Mtcl1	UTSW	17	66,745,256 (GRCm39)	missense	probably damaging	1.00
R4373:Mtcl1	UTSW	17	66,687,074 (GRCm39)	missense	probably benign	0.05
R4396:Mtcl1	UTSW	17	66,651,220 (GRCm39)	missense	probably damaging	1.00
R4591:Mtcl1	UTSW	17	66,655,506 (GRCm39)	missense	probably benign	0.07
R4610:Mtcl1	UTSW	17	66,684,882 (GRCm39)	missense	probably benign	0.04
R4922:Mtcl1	UTSW	17	66,655,474 (GRCm39)	missense	probably benign	0.29
R4992:Mtcl1	UTSW	17	66,649,834 (GRCm39)	missense	probably damaging	0.99
R5169:Mtcl1	UTSW	17	66,650,818 (GRCm39)	missense	probably benign	0.00
R5542:Mtcl1	UTSW	17	66,691,354 (GRCm39)	intron	probably benign
R5804:Mtcl1	UTSW	17	66,650,132 (GRCm39)	missense	probably benign	0.03
R5998:Mtcl1	UTSW	17	66,675,275 (GRCm39)	missense	probably damaging	0.99
R6163:Mtcl1	UTSW	17	66,686,326 (GRCm39)	missense	probably benign	0.10
R6191:Mtcl1	UTSW	17	66,650,521 (GRCm39)	missense	probably damaging	1.00
R6254:Mtcl1	UTSW	17	66,665,129 (GRCm39)	missense	probably benign	0.02
R6260:Mtcl1	UTSW	17	66,650,536 (GRCm39)	missense	probably damaging	1.00
R6524:Mtcl1	UTSW	17	66,655,280 (GRCm39)	missense	probably benign	0.15
R6884:Mtcl1	UTSW	17	66,745,197 (GRCm39)	missense	probably damaging	1.00
R7199:Mtcl1	UTSW	17	66,647,534 (GRCm39)	missense	probably benign	0.13
R7431:Mtcl1	UTSW	17	66,649,901 (GRCm39)	nonsense	probably null
R7479:Mtcl1	UTSW	17	66,686,485 (GRCm39)	missense	probably benign
R7564:Mtcl1	UTSW	17	66,678,322 (GRCm39)	missense	probably benign
R7608:Mtcl1	UTSW	17	66,650,300 (GRCm39)	missense	probably damaging	0.96
R7691:Mtcl1	UTSW	17	66,687,352 (GRCm39)	missense	probably damaging	1.00
R7847:Mtcl1	UTSW	17	66,651,328 (GRCm39)	missense	probably damaging	0.96
R7908:Mtcl1	UTSW	17	66,678,325 (GRCm39)	missense	possibly damaging	0.80
R8262:Mtcl1	UTSW	17	66,650,653 (GRCm39)	missense	probably damaging	0.99
R8324:Mtcl1	UTSW	17	66,743,212 (GRCm39)	missense	probably damaging	1.00
R8477:Mtcl1	UTSW	17	66,684,942 (GRCm39)	missense	probably benign	0.10
R8927:Mtcl1	UTSW	17	66,755,628 (GRCm39)	missense	probably benign	0.00
R8928:Mtcl1	UTSW	17	66,755,628 (GRCm39)	missense	probably benign	0.00
R9016:Mtcl1	UTSW	17	66,651,062 (GRCm39)	missense	probably damaging	1.00
R9048:Mtcl1	UTSW	17	66,678,331 (GRCm39)	missense	probably benign	0.01
R9059:Mtcl1	UTSW	17	66,650,606 (GRCm39)	missense	probably benign	0.04
R9221:Mtcl1	UTSW	17	66,650,879 (GRCm39)	missense	probably benign	0.00
R9327:Mtcl1	UTSW	17	66,645,130 (GRCm39)	missense	probably damaging	0.96
R9398:Mtcl1	UTSW	17	66,755,462 (GRCm39)	missense	possibly damaging	0.46
R9762:Mtcl1	UTSW	17	66,673,347 (GRCm39)	missense	probably benign	0.00
X0065:Mtcl1	UTSW	17	66,686,602 (GRCm39)	missense	probably damaging	1.00
Z1088:Mtcl1	UTSW	17	66,650,723 (GRCm39)	missense	probably benign	0.20
Z1176:Mtcl1	UTSW	17	66,686,455 (GRCm39)	missense	probably benign	0.01
Z1177:Mtcl1	UTSW	17	66,651,290 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CCACCGAGGTCACAGAGAG -3'
(R):5'- GCCATGGAGACGCTGAAC -3'

Sequencing Primer
(F):5'- TCACAGAGAGGGTCACGGC -3'
(R):5'- GGACACCAAGCCGCAGC -3'

Posted On

2016-07-28