Incidental Mutation 'IGL02994:Nbr1'
ID |
407059 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Nbr1
|
Ensembl Gene |
ENSMUSG00000017119 |
Gene Name |
NBR1, autophagy cargo receptor |
Synonyms |
|
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
IGL02994
|
Quality Score |
|
Status
|
|
Chromosome |
11 |
Chromosomal Location |
101442975-101472777 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to T
at 101447053 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Asparagine to Isoleucine
at position 13
(N13I)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000102836
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000017290]
[ENSMUST00000071537]
[ENSMUST00000103098]
[ENSMUST00000103099]
[ENSMUST00000107208]
[ENSMUST00000107212]
[ENSMUST00000127421]
[ENSMUST00000107213]
[ENSMUST00000107218]
[ENSMUST00000147239]
[ENSMUST00000123558]
[ENSMUST00000136185]
[ENSMUST00000190862]
[ENSMUST00000142086]
|
AlphaFold |
P97432 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000017290
|
SMART Domains |
Protein: ENSMUSP00000017290 Gene: ENSMUSG00000017146
Domain | Start | End | E-Value | Type |
RING
|
24 |
64 |
1.82e-7 |
SMART |
Pfam:BRCT_assoc
|
342 |
503 |
2.6e-69 |
PFAM |
low complexity region
|
1173 |
1185 |
N/A |
INTRINSIC |
Blast:BRCT
|
1343 |
1406 |
2e-16 |
BLAST |
low complexity region
|
1555 |
1575 |
N/A |
INTRINSIC |
BRCT
|
1587 |
1669 |
3.87e-11 |
SMART |
BRCT
|
1700 |
1787 |
3.42e-12 |
SMART |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000071537
AA Change: N13I
PolyPhen 2
Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
|
SMART Domains |
Protein: ENSMUSP00000071467 Gene: ENSMUSG00000017119 AA Change: N13I
Domain | Start | End | E-Value | Type |
PB1
|
4 |
86 |
2.05e-8 |
SMART |
ZnF_ZZ
|
212 |
257 |
1.21e-13 |
SMART |
coiled coil region
|
291 |
330 |
N/A |
INTRINSIC |
Pfam:N_BRCA1_IG
|
378 |
479 |
7.1e-34 |
PFAM |
low complexity region
|
507 |
518 |
N/A |
INTRINSIC |
coiled coil region
|
714 |
744 |
N/A |
INTRINSIC |
PDB:2MJ5|B
|
935 |
981 |
2e-24 |
PDB |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000103098
AA Change: N13I
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000099387 Gene: ENSMUSG00000017119 AA Change: N13I
Domain | Start | End | E-Value | Type |
PB1
|
4 |
86 |
7.02e-16 |
SMART |
ZnF_ZZ
|
212 |
257 |
1.21e-13 |
SMART |
coiled coil region
|
291 |
330 |
N/A |
INTRINSIC |
PDB:4OLE|D
|
368 |
486 |
5e-77 |
PDB |
low complexity region
|
507 |
518 |
N/A |
INTRINSIC |
coiled coil region
|
714 |
744 |
N/A |
INTRINSIC |
PDB:2MJ5|B
|
935 |
981 |
2e-24 |
PDB |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000103099
AA Change: N13I
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000099388 Gene: ENSMUSG00000017119 AA Change: N13I
Domain | Start | End | E-Value | Type |
PB1
|
4 |
86 |
7.02e-16 |
SMART |
ZnF_ZZ
|
212 |
257 |
1.21e-13 |
SMART |
coiled coil region
|
291 |
330 |
N/A |
INTRINSIC |
PDB:4OLE|D
|
368 |
486 |
5e-77 |
PDB |
low complexity region
|
507 |
518 |
N/A |
INTRINSIC |
coiled coil region
|
714 |
744 |
N/A |
INTRINSIC |
PDB:2MJ5|B
|
935 |
981 |
2e-24 |
PDB |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000107208
AA Change: N13I
PolyPhen 2
Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
|
SMART Domains |
Protein: ENSMUSP00000102826 Gene: ENSMUSG00000017119 AA Change: N13I
Domain | Start | End | E-Value | Type |
PB1
|
4 |
86 |
7.02e-16 |
SMART |
ZnF_ZZ
|
212 |
257 |
1.21e-13 |
SMART |
coiled coil region
|
291 |
330 |
N/A |
INTRINSIC |
PDB:4OLE|D
|
368 |
486 |
1e-77 |
PDB |
low complexity region
|
507 |
518 |
N/A |
INTRINSIC |
coiled coil region
|
714 |
744 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000107212
AA Change: N13I
PolyPhen 2
Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
|
SMART Domains |
Protein: ENSMUSP00000102830 Gene: ENSMUSG00000017119 AA Change: N13I
Domain | Start | End | E-Value | Type |
PB1
|
4 |
86 |
7.02e-16 |
SMART |
ZnF_ZZ
|
212 |
257 |
1.21e-13 |
SMART |
coiled coil region
|
291 |
330 |
N/A |
INTRINSIC |
PDB:4OLE|D
|
368 |
486 |
3e-77 |
PDB |
low complexity region
|
507 |
518 |
N/A |
INTRINSIC |
coiled coil region
|
689 |
719 |
N/A |
INTRINSIC |
PDB:2MJ5|B
|
910 |
956 |
2e-24 |
PDB |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000127421
AA Change: N13I
PolyPhen 2
Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000107213
AA Change: N13I
PolyPhen 2
Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)
|
SMART Domains |
Protein: ENSMUSP00000102831 Gene: ENSMUSG00000017119 AA Change: N13I
Domain | Start | End | E-Value | Type |
PB1
|
4 |
86 |
7.02e-16 |
SMART |
ZnF_ZZ
|
212 |
257 |
1.21e-13 |
SMART |
coiled coil region
|
291 |
330 |
N/A |
INTRINSIC |
PDB:4OLE|D
|
368 |
486 |
2e-77 |
PDB |
low complexity region
|
507 |
518 |
N/A |
INTRINSIC |
coiled coil region
|
677 |
707 |
N/A |
INTRINSIC |
PDB:2MJ5|B
|
898 |
944 |
2e-24 |
PDB |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000107218
AA Change: N13I
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000102836 Gene: ENSMUSG00000017119 AA Change: N13I
Domain | Start | End | E-Value | Type |
PB1
|
4 |
86 |
7.02e-16 |
SMART |
ZnF_ZZ
|
212 |
257 |
1.21e-13 |
SMART |
coiled coil region
|
291 |
330 |
N/A |
INTRINSIC |
PDB:4OLE|D
|
368 |
486 |
5e-77 |
PDB |
low complexity region
|
507 |
518 |
N/A |
INTRINSIC |
coiled coil region
|
714 |
744 |
N/A |
INTRINSIC |
PDB:2MJ5|B
|
935 |
981 |
2e-24 |
PDB |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000147239
AA Change: N13I
PolyPhen 2
Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000123558
AA Change: N13I
PolyPhen 2
Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
|
SMART Domains |
Protein: ENSMUSP00000133619 Gene: ENSMUSG00000017119 AA Change: N13I
Domain | Start | End | E-Value | Type |
PB1
|
4 |
86 |
7.02e-16 |
SMART |
ZnF_ZZ
|
212 |
257 |
1.21e-13 |
SMART |
coiled coil region
|
291 |
330 |
N/A |
INTRINSIC |
PDB:4OLE|D
|
368 |
486 |
2e-77 |
PDB |
low complexity region
|
507 |
518 |
N/A |
INTRINSIC |
coiled coil region
|
714 |
744 |
N/A |
INTRINSIC |
|
Predicted Effect |
possibly damaging
Transcript: ENSMUST00000136185
AA Change: N13I
PolyPhen 2
Score 0.940 (Sensitivity: 0.80; Specificity: 0.94)
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000149170
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000184092
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000190862
|
SMART Domains |
Protein: ENSMUSP00000139599 Gene: ENSMUSG00000017146
Domain | Start | End | E-Value | Type |
SCOP:d1jm7a_
|
1 |
56 |
1e-6 |
SMART |
PDB:1JM7|A
|
1 |
63 |
1e-30 |
PDB |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000142086
|
SMART Domains |
Protein: ENSMUSP00000139813 Gene: ENSMUSG00000017146
Domain | Start | End | E-Value | Type |
RING
|
24 |
64 |
8.6e-10 |
SMART |
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene was originally identified as an ovarian tumor antigen monitored in ovarian cancer. The encoded protein contains a B-box/coiled-coil motif, which is present in many genes with transformation potential. It functions as a specific autophagy receptor for the selective autophagic degradation of peroxisomes by forming intracellular inclusions with ubiquitylated autophagic substrates. This gene is located on a region of chromosome 17q21.1 that is in close proximity to the BRCA1 tumor suppressor gene. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Apr 2014] PHENOTYPE: Homozygous mice of the genetic truncation allele had an age-dependent increase in bone mass and bone mineral density. Mice homozygous for a floxed allele activated in T cells exhibit decreased ovalbumin-induced inflammation and defective Th2 polarization. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 31 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Acp3 |
T |
A |
9: 104,186,602 (GRCm39) |
|
probably benign |
Het |
Ahnak2 |
A |
G |
12: 112,749,827 (GRCm39) |
V137A |
probably damaging |
Het |
Alk |
G |
T |
17: 72,256,815 (GRCm39) |
F681L |
probably benign |
Het |
Ankrd35 |
T |
C |
3: 96,590,307 (GRCm39) |
|
probably benign |
Het |
Aqp3 |
A |
T |
4: 41,093,614 (GRCm39) |
C267S |
probably benign |
Het |
Arl13b |
T |
A |
16: 62,632,366 (GRCm39) |
I76F |
probably damaging |
Het |
Ccn2 |
T |
A |
10: 24,472,763 (GRCm39) |
N224K |
probably damaging |
Het |
Cdc42bpa |
G |
T |
1: 179,827,002 (GRCm39) |
R85L |
probably damaging |
Het |
Dock4 |
T |
G |
12: 40,829,159 (GRCm39) |
I1015R |
probably damaging |
Het |
Dst |
A |
G |
1: 34,268,333 (GRCm39) |
|
probably benign |
Het |
Egfr |
T |
C |
11: 16,861,811 (GRCm39) |
Y1197H |
probably damaging |
Het |
Endod1 |
A |
G |
9: 14,268,183 (GRCm39) |
V434A |
possibly damaging |
Het |
Exosc9 |
A |
G |
3: 36,607,287 (GRCm39) |
|
probably benign |
Het |
Fgg |
G |
T |
3: 82,915,781 (GRCm39) |
R74L |
probably benign |
Het |
Fmo2 |
A |
T |
1: 162,708,189 (GRCm39) |
D315E |
probably damaging |
Het |
H2-M3 |
G |
A |
17: 37,581,629 (GRCm39) |
S97N |
probably benign |
Het |
Ighv14-2 |
T |
A |
12: 113,958,211 (GRCm39) |
T77S |
probably benign |
Het |
Klhl9 |
A |
T |
4: 88,639,434 (GRCm39) |
L269* |
probably null |
Het |
Lin37 |
G |
A |
7: 30,256,585 (GRCm39) |
R84W |
probably damaging |
Het |
Macroh2a1 |
T |
C |
13: 56,252,112 (GRCm39) |
|
probably benign |
Het |
Mkln1 |
T |
C |
6: 31,467,378 (GRCm39) |
S31P |
probably damaging |
Het |
Nacad |
A |
G |
11: 6,549,528 (GRCm39) |
L1221P |
possibly damaging |
Het |
Ndfip1 |
T |
C |
18: 38,585,469 (GRCm39) |
I161T |
probably damaging |
Het |
Nsg1 |
A |
G |
5: 38,312,946 (GRCm39) |
|
probably benign |
Het |
Rsbn1l |
G |
T |
5: 21,113,232 (GRCm39) |
T430K |
probably damaging |
Het |
Serpina6 |
A |
G |
12: 103,620,210 (GRCm39) |
S180P |
probably benign |
Het |
Slc4a5 |
T |
C |
6: 83,249,106 (GRCm39) |
L570P |
probably damaging |
Het |
Tank |
A |
G |
2: 61,480,636 (GRCm39) |
|
probably benign |
Het |
Tpd52 |
A |
G |
3: 9,012,590 (GRCm39) |
F76L |
probably benign |
Het |
Ubox5 |
A |
C |
2: 130,442,237 (GRCm39) |
L150R |
probably benign |
Het |
Zfp710 |
T |
C |
7: 79,731,581 (GRCm39) |
S253P |
probably benign |
Het |
|
Other mutations in Nbr1 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL02187:Nbr1
|
APN |
11 |
101,460,185 (GRCm39) |
missense |
possibly damaging |
0.91 |
IGL02192:Nbr1
|
APN |
11 |
101,460,417 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02259:Nbr1
|
APN |
11 |
101,468,816 (GRCm39) |
missense |
probably damaging |
0.99 |
IGL02951:Nbr1
|
APN |
11 |
101,462,805 (GRCm39) |
critical splice donor site |
probably null |
|
R0087:Nbr1
|
UTSW |
11 |
101,455,519 (GRCm39) |
missense |
probably benign |
0.16 |
R0630:Nbr1
|
UTSW |
11 |
101,457,913 (GRCm39) |
unclassified |
probably benign |
|
R0723:Nbr1
|
UTSW |
11 |
101,467,145 (GRCm39) |
nonsense |
probably null |
|
R0733:Nbr1
|
UTSW |
11 |
101,467,197 (GRCm39) |
missense |
probably benign |
0.00 |
R1482:Nbr1
|
UTSW |
11 |
101,463,667 (GRCm39) |
missense |
probably benign |
0.34 |
R1567:Nbr1
|
UTSW |
11 |
101,466,037 (GRCm39) |
missense |
probably damaging |
0.98 |
R1570:Nbr1
|
UTSW |
11 |
101,455,656 (GRCm39) |
unclassified |
probably benign |
|
R1668:Nbr1
|
UTSW |
11 |
101,460,592 (GRCm39) |
missense |
probably benign |
0.00 |
R1759:Nbr1
|
UTSW |
11 |
101,450,369 (GRCm39) |
missense |
probably damaging |
1.00 |
R1903:Nbr1
|
UTSW |
11 |
101,465,978 (GRCm39) |
missense |
probably damaging |
0.98 |
R1927:Nbr1
|
UTSW |
11 |
101,458,040 (GRCm39) |
missense |
possibly damaging |
0.78 |
R2131:Nbr1
|
UTSW |
11 |
101,457,017 (GRCm39) |
splice site |
probably null |
|
R2211:Nbr1
|
UTSW |
11 |
101,458,090 (GRCm39) |
critical splice donor site |
probably null |
|
R2255:Nbr1
|
UTSW |
11 |
101,463,643 (GRCm39) |
missense |
possibly damaging |
0.80 |
R4270:Nbr1
|
UTSW |
11 |
101,458,048 (GRCm39) |
missense |
possibly damaging |
0.87 |
R4271:Nbr1
|
UTSW |
11 |
101,458,048 (GRCm39) |
missense |
possibly damaging |
0.87 |
R4710:Nbr1
|
UTSW |
11 |
101,466,101 (GRCm39) |
missense |
probably damaging |
1.00 |
R4947:Nbr1
|
UTSW |
11 |
101,465,903 (GRCm39) |
missense |
probably benign |
0.06 |
R5468:Nbr1
|
UTSW |
11 |
101,463,290 (GRCm39) |
missense |
probably benign |
0.10 |
R5554:Nbr1
|
UTSW |
11 |
101,455,633 (GRCm39) |
missense |
probably benign |
0.34 |
R5771:Nbr1
|
UTSW |
11 |
101,450,364 (GRCm39) |
missense |
probably damaging |
1.00 |
R6119:Nbr1
|
UTSW |
11 |
101,457,938 (GRCm39) |
splice site |
probably null |
|
R6400:Nbr1
|
UTSW |
11 |
101,456,600 (GRCm39) |
missense |
probably damaging |
1.00 |
R6603:Nbr1
|
UTSW |
11 |
101,446,931 (GRCm39) |
unclassified |
probably benign |
|
R6943:Nbr1
|
UTSW |
11 |
101,468,777 (GRCm39) |
missense |
probably damaging |
1.00 |
R7347:Nbr1
|
UTSW |
11 |
101,460,147 (GRCm39) |
nonsense |
probably null |
|
R7472:Nbr1
|
UTSW |
11 |
101,462,765 (GRCm39) |
missense |
probably damaging |
1.00 |
R7501:Nbr1
|
UTSW |
11 |
101,457,026 (GRCm39) |
missense |
probably damaging |
1.00 |
R7709:Nbr1
|
UTSW |
11 |
101,447,067 (GRCm39) |
missense |
probably damaging |
1.00 |
R7744:Nbr1
|
UTSW |
11 |
101,460,210 (GRCm39) |
missense |
probably damaging |
1.00 |
R7795:Nbr1
|
UTSW |
11 |
101,460,154 (GRCm39) |
missense |
probably damaging |
1.00 |
R8865:Nbr1
|
UTSW |
11 |
101,455,520 (GRCm39) |
missense |
probably benign |
0.00 |
R9377:Nbr1
|
UTSW |
11 |
101,456,590 (GRCm39) |
missense |
possibly damaging |
0.95 |
R9615:Nbr1
|
UTSW |
11 |
101,465,978 (GRCm39) |
missense |
probably benign |
0.02 |
R9667:Nbr1
|
UTSW |
11 |
101,451,261 (GRCm39) |
missense |
possibly damaging |
0.68 |
R9801:Nbr1
|
UTSW |
11 |
101,447,025 (GRCm39) |
missense |
probably damaging |
0.99 |
X0019:Nbr1
|
UTSW |
11 |
101,457,950 (GRCm39) |
missense |
possibly damaging |
0.50 |
Z1176:Nbr1
|
UTSW |
11 |
101,463,380 (GRCm39) |
missense |
probably benign |
0.04 |
|
Posted On |
2016-08-02 |