Incidental Mutation 'IGL03000:Nfasc'
| ID |
407302 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Nfasc
|
| Ensembl Gene |
ENSMUSG00000026442 |
| Gene Name |
neurofascin |
| Synonyms |
D430023G06Rik |
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
IGL03000
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
1 |
| Chromosomal Location |
132492428-132669535 bp(-) (GRCm39) |
| Type of Mutation |
splice site |
| DNA Base Change (assembly) |
T to C
at 132549247 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000139520
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000043189]
[ENSMUST00000094569]
[ENSMUST00000163770]
[ENSMUST00000187861]
[ENSMUST00000188307]
|
| AlphaFold |
Q810U3 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000043189
|
| SMART Domains |
Protein: ENSMUSP00000035454
Gene: ENSMUSG00000026442
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
24 |
N/A |
INTRINSIC |
|
IG
|
42 |
131 |
4.5e0 |
SMART |
|
IG
|
141 |
228 |
2.44e-7 |
SMART |
|
IGc2
|
253 |
317 |
1.53e-17 |
SMART |
|
IGc2
|
343 |
409 |
1.76e-8 |
SMART |
|
IGc2
|
437 |
502 |
2.39e-10 |
SMART |
|
IGc2
|
528 |
593 |
2.54e-5 |
SMART |
|
FN3
|
607 |
690 |
2.17e-11 |
SMART |
|
FN3
|
707 |
789 |
2.85e-6 |
SMART |
|
FN3
|
805 |
896 |
2.21e-3 |
SMART |
|
FN3
|
911 |
995 |
9.92e-6 |
SMART |
|
low complexity region
|
996 |
1018 |
N/A |
INTRINSIC |
|
transmembrane domain
|
1026 |
1048 |
N/A |
INTRINSIC |
|
Pfam:Bravo_FIGEY
|
1049 |
1133 |
1.4e-29 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000094569
|
| SMART Domains |
Protein: ENSMUSP00000092148
Gene: ENSMUSG00000026442
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
24 |
N/A |
INTRINSIC |
|
IG
|
48 |
137 |
4.5e0 |
SMART |
|
IG
|
147 |
234 |
2.44e-7 |
SMART |
|
IGc2
|
259 |
323 |
1.53e-17 |
SMART |
|
IGc2
|
349 |
415 |
1.76e-8 |
SMART |
|
IGc2
|
443 |
508 |
2.39e-10 |
SMART |
|
IGc2
|
534 |
599 |
2.54e-5 |
SMART |
|
FN3
|
628 |
711 |
2.17e-11 |
SMART |
|
FN3
|
728 |
810 |
2.85e-6 |
SMART |
|
FN3
|
825 |
909 |
9.92e-6 |
SMART |
|
FN3
|
1010 |
1086 |
6.91e-5 |
SMART |
|
transmembrane domain
|
1109 |
1131 |
N/A |
INTRINSIC |
|
Pfam:Bravo_FIGEY
|
1132 |
1216 |
2.2e-29 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000163770
|
| SMART Domains |
Protein: ENSMUSP00000132979
Gene: ENSMUSG00000026442
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
24 |
N/A |
INTRINSIC |
|
IG
|
42 |
131 |
4.5e0 |
SMART |
|
IG
|
141 |
228 |
2.44e-7 |
SMART |
|
IGc2
|
270 |
334 |
1.53e-17 |
SMART |
|
IGc2
|
360 |
426 |
1.76e-8 |
SMART |
|
IGc2
|
454 |
519 |
2.39e-10 |
SMART |
|
IGc2
|
545 |
610 |
2.54e-5 |
SMART |
|
FN3
|
624 |
707 |
2.17e-11 |
SMART |
|
FN3
|
724 |
806 |
2.85e-6 |
SMART |
|
FN3
|
822 |
913 |
2.21e-3 |
SMART |
|
FN3
|
928 |
1012 |
9.92e-6 |
SMART |
|
low complexity region
|
1013 |
1035 |
N/A |
INTRINSIC |
|
transmembrane domain
|
1043 |
1065 |
N/A |
INTRINSIC |
|
Pfam:Bravo_FIGEY
|
1066 |
1150 |
5e-30 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000186389
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000187861
|
| SMART Domains |
Protein: ENSMUSP00000139955
Gene: ENSMUSG00000026442
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
24 |
N/A |
INTRINSIC |
|
IG
|
48 |
137 |
1.8e-2 |
SMART |
|
IG
|
147 |
234 |
1e-9 |
SMART |
|
IGc2
|
259 |
323 |
6.4e-20 |
SMART |
|
IGc2
|
349 |
415 |
7e-11 |
SMART |
|
IGc2
|
443 |
508 |
9.7e-13 |
SMART |
|
IGc2
|
534 |
599 |
1.1e-7 |
SMART |
|
FN3
|
628 |
711 |
1e-13 |
SMART |
|
FN3
|
728 |
810 |
1.4e-8 |
SMART |
|
FN3
|
826 |
917 |
1.1e-5 |
SMART |
|
FN3
|
932 |
1016 |
4.8e-8 |
SMART |
|
FN3
|
1117 |
1193 |
3.4e-7 |
SMART |
|
transmembrane domain
|
1216 |
1238 |
N/A |
INTRINSIC |
|
Pfam:Bravo_FIGEY
|
1239 |
1325 |
2.6e-26 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000188307
|
| SMART Domains |
Protein: ENSMUSP00000139520
Gene: ENSMUSG00000026442
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
24 |
N/A |
INTRINSIC |
|
IG
|
42 |
131 |
1.8e-2 |
SMART |
|
IG
|
141 |
228 |
1e-9 |
SMART |
|
IGc2
|
253 |
317 |
6.4e-20 |
SMART |
|
IGc2
|
343 |
409 |
7e-11 |
SMART |
|
IGc2
|
437 |
502 |
9.7e-13 |
SMART |
|
IGc2
|
528 |
593 |
1.1e-7 |
SMART |
|
FN3
|
622 |
705 |
1e-13 |
SMART |
|
FN3
|
722 |
804 |
1.4e-8 |
SMART |
|
FN3
|
820 |
890 |
3.8e-1 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000191294
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: This gene encodes an L1 family immunoglobulin cell adhesion molecule with multiple IGcam and fibronectin domains. The protein functions in neurite outgrowth, neurite fasciculation, and organization of the axon initial segment (AIS) and nodes of Ranvier on axons during early development. Both the AIS and nodes of Ranvier contain high densities of voltage-gated Na+ (Nav) channels which are clustered by interactions with cytoskeletal and scaffolding proteins including this protein, gliomedin, ankyrin 3 (ankyrin-G), and betaIV spectrin. This protein links the AIS extracellular matrix to the intracellular cytoskeleton. This gene undergoes extensive alternative splicing, and the full-length nature of some variants has not been determined. [provided by RefSeq, May 2009]
PHENOTYPE: Mice homozygous for a null allele die within 6 to 7 days of birth, exhibit reduced nerve conduction velocity and abnormal paranodal junction formation. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 48 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abca12 |
T |
C |
1: 71,360,959 (GRCm39) |
S445G |
probably benign |
Het |
| Abca5 |
C |
T |
11: 110,208,640 (GRCm39) |
V226I |
probably benign |
Het |
| Ankrd34c |
A |
T |
9: 89,611,239 (GRCm39) |
D367E |
probably benign |
Het |
| Bmp6 |
G |
T |
13: 38,682,887 (GRCm39) |
|
probably benign |
Het |
| Cacna2d2 |
T |
C |
9: 107,401,397 (GRCm39) |
|
probably null |
Het |
| Cblb |
T |
G |
16: 52,024,905 (GRCm39) |
D933E |
probably damaging |
Het |
| Ccny |
A |
G |
18: 9,353,489 (GRCm39) |
S95P |
probably benign |
Het |
| Cep192 |
A |
G |
18: 67,985,115 (GRCm39) |
I1658V |
probably damaging |
Het |
| Cntn6 |
A |
T |
6: 104,781,347 (GRCm39) |
T478S |
probably damaging |
Het |
| Cpne7 |
T |
C |
8: 123,853,435 (GRCm39) |
F247L |
probably benign |
Het |
| Csf1r |
A |
G |
18: 61,242,724 (GRCm39) |
E29G |
probably damaging |
Het |
| Dctn3 |
T |
A |
4: 41,719,912 (GRCm39) |
I65F |
possibly damaging |
Het |
| Dock1 |
A |
G |
7: 134,390,969 (GRCm39) |
E743G |
probably benign |
Het |
| Dus2 |
C |
A |
8: 106,775,316 (GRCm39) |
T281N |
probably damaging |
Het |
| Gbx1 |
G |
T |
5: 24,709,924 (GRCm39) |
T307K |
probably benign |
Het |
| Gtf2ird2 |
A |
T |
5: 134,223,745 (GRCm39) |
N93I |
probably benign |
Het |
| Heatr1 |
A |
G |
13: 12,449,292 (GRCm39) |
D1930G |
probably damaging |
Het |
| Hif3a |
T |
C |
7: 16,782,564 (GRCm39) |
I334V |
probably benign |
Het |
| Ints1 |
G |
T |
5: 139,752,261 (GRCm39) |
N756K |
probably benign |
Het |
| Kcnn2 |
T |
C |
18: 45,693,635 (GRCm39) |
F404L |
probably damaging |
Het |
| Kmt2c |
G |
A |
5: 25,489,170 (GRCm39) |
R4590W |
probably damaging |
Het |
| Limk1 |
A |
T |
5: 134,699,355 (GRCm39) |
V134E |
probably damaging |
Het |
| Mep1a |
A |
G |
17: 43,785,881 (GRCm39) |
V736A |
probably benign |
Het |
| Mex3a |
T |
A |
3: 88,443,602 (GRCm39) |
I226N |
probably damaging |
Het |
| Mgl2 |
A |
T |
11: 70,025,026 (GRCm39) |
K16* |
probably null |
Het |
| Mms22l |
G |
T |
4: 24,581,161 (GRCm39) |
V864L |
probably damaging |
Het |
| Mroh4 |
T |
A |
15: 74,487,963 (GRCm39) |
M320L |
probably benign |
Het |
| Mylk3 |
G |
A |
8: 86,085,806 (GRCm39) |
P243S |
probably damaging |
Het |
| Nbea |
A |
C |
3: 55,912,048 (GRCm39) |
D1246E |
possibly damaging |
Het |
| Ndnf |
A |
G |
6: 65,680,299 (GRCm39) |
T193A |
possibly damaging |
Het |
| Or6k8-ps1 |
A |
G |
1: 173,979,126 (GRCm39) |
T15A |
probably benign |
Het |
| Ptprq |
A |
T |
10: 107,378,518 (GRCm39) |
F2008I |
probably damaging |
Het |
| Rhag |
A |
G |
17: 41,139,413 (GRCm39) |
K116R |
probably benign |
Het |
| Rictor |
T |
A |
15: 6,798,721 (GRCm39) |
|
probably benign |
Het |
| Slc35f5 |
C |
A |
1: 125,502,479 (GRCm39) |
T277N |
probably damaging |
Het |
| Sorcs2 |
A |
G |
5: 36,222,675 (GRCm39) |
|
probably benign |
Het |
| Ssh2 |
T |
A |
11: 77,312,032 (GRCm39) |
|
probably benign |
Het |
| Togaram2 |
T |
C |
17: 72,024,365 (GRCm39) |
S830P |
probably benign |
Het |
| Trim30d |
T |
C |
7: 104,122,476 (GRCm39) |
T112A |
probably benign |
Het |
| Ttc34 |
T |
C |
4: 154,949,888 (GRCm39) |
V947A |
probably damaging |
Het |
| Ttn |
A |
G |
2: 76,642,953 (GRCm39) |
|
probably benign |
Het |
| Ubr5 |
A |
T |
15: 38,025,096 (GRCm39) |
V560D |
probably damaging |
Het |
| Ush2a |
A |
T |
1: 188,282,053 (GRCm39) |
E1856V |
possibly damaging |
Het |
| Zfp142 |
T |
C |
1: 74,612,777 (GRCm39) |
M457V |
probably benign |
Het |
| Zfp711 |
C |
T |
X: 111,534,555 (GRCm39) |
Q137* |
probably null |
Het |
| Zkscan17 |
T |
C |
11: 59,377,986 (GRCm39) |
Y399C |
probably damaging |
Het |
| Zswim6 |
T |
G |
13: 107,863,649 (GRCm39) |
|
noncoding transcript |
Het |
| Zswim6 |
T |
A |
13: 107,863,650 (GRCm39) |
|
noncoding transcript |
Het |
|
| Other mutations in Nfasc |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00895:Nfasc
|
APN |
1 |
132,501,536 (GRCm39) |
nonsense |
probably null |
|
|
IGL01088:Nfasc
|
APN |
1 |
132,570,514 (GRCm39) |
utr 5 prime |
probably benign |
|
|
IGL01958:Nfasc
|
APN |
1 |
132,536,176 (GRCm39) |
nonsense |
probably null |
|
|
IGL01999:Nfasc
|
APN |
1 |
132,532,985 (GRCm39) |
splice site |
probably benign |
|
|
IGL02170:Nfasc
|
APN |
1 |
132,538,104 (GRCm39) |
nonsense |
probably null |
|
|
IGL02187:Nfasc
|
APN |
1 |
132,498,219 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02192:Nfasc
|
APN |
1 |
132,498,219 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02452:Nfasc
|
APN |
1 |
132,548,662 (GRCm39) |
critical splice donor site |
probably null |
|
|
IGL02698:Nfasc
|
APN |
1 |
132,562,475 (GRCm39) |
missense |
probably benign |
0.06 |
|
IGL02797:Nfasc
|
APN |
1 |
132,538,186 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03027:Nfasc
|
APN |
1 |
132,538,207 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Fascist
|
UTSW |
1 |
132,539,343 (GRCm39) |
missense |
probably damaging |
1.00 |
|
jiggle
|
UTSW |
1 |
132,529,759 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Partisan
|
UTSW |
1 |
132,533,287 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Tremble
|
UTSW |
1 |
132,539,333 (GRCm39) |
missense |
probably damaging |
1.00 |
|
PIT4377001:Nfasc
|
UTSW |
1 |
132,510,804 (GRCm39) |
missense |
unknown |
|
|
R0240:Nfasc
|
UTSW |
1 |
132,529,721 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0240:Nfasc
|
UTSW |
1 |
132,529,721 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0241:Nfasc
|
UTSW |
1 |
132,564,731 (GRCm39) |
missense |
probably benign |
0.02 |
|
R0241:Nfasc
|
UTSW |
1 |
132,564,731 (GRCm39) |
missense |
probably benign |
0.02 |
|
R0418:Nfasc
|
UTSW |
1 |
132,539,333 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0513:Nfasc
|
UTSW |
1 |
132,531,584 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R0639:Nfasc
|
UTSW |
1 |
132,531,554 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0646:Nfasc
|
UTSW |
1 |
132,536,176 (GRCm39) |
nonsense |
probably null |
|
|
R1103:Nfasc
|
UTSW |
1 |
132,534,795 (GRCm39) |
splice site |
probably benign |
|
|
R1269:Nfasc
|
UTSW |
1 |
132,538,526 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1550:Nfasc
|
UTSW |
1 |
132,536,241 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R1749:Nfasc
|
UTSW |
1 |
132,539,370 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1773:Nfasc
|
UTSW |
1 |
132,538,577 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1921:Nfasc
|
UTSW |
1 |
132,538,543 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1987:Nfasc
|
UTSW |
1 |
132,538,624 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2141:Nfasc
|
UTSW |
1 |
132,524,383 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2239:Nfasc
|
UTSW |
1 |
132,510,760 (GRCm39) |
intron |
probably benign |
|
|
R2413:Nfasc
|
UTSW |
1 |
132,523,243 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2428:Nfasc
|
UTSW |
1 |
132,523,392 (GRCm39) |
missense |
possibly damaging |
0.55 |
|
R2472:Nfasc
|
UTSW |
1 |
132,515,959 (GRCm39) |
intron |
probably benign |
|
|
R2517:Nfasc
|
UTSW |
1 |
132,525,501 (GRCm39) |
splice site |
probably null |
|
|
R3850:Nfasc
|
UTSW |
1 |
132,559,471 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4050:Nfasc
|
UTSW |
1 |
132,538,043 (GRCm39) |
splice site |
probably benign |
|
|
R4061:Nfasc
|
UTSW |
1 |
132,525,583 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4088:Nfasc
|
UTSW |
1 |
132,523,329 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4342:Nfasc
|
UTSW |
1 |
132,559,443 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4343:Nfasc
|
UTSW |
1 |
132,559,443 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4345:Nfasc
|
UTSW |
1 |
132,559,443 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4452:Nfasc
|
UTSW |
1 |
132,562,409 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4818:Nfasc
|
UTSW |
1 |
132,531,568 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R4851:Nfasc
|
UTSW |
1 |
132,529,759 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5014:Nfasc
|
UTSW |
1 |
132,512,185 (GRCm39) |
intron |
probably benign |
|
|
R5768:Nfasc
|
UTSW |
1 |
132,532,883 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6145:Nfasc
|
UTSW |
1 |
132,562,455 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6335:Nfasc
|
UTSW |
1 |
132,504,132 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R6379:Nfasc
|
UTSW |
1 |
132,498,280 (GRCm39) |
nonsense |
probably null |
|
|
R6486:Nfasc
|
UTSW |
1 |
132,532,952 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7022:Nfasc
|
UTSW |
1 |
132,548,787 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7062:Nfasc
|
UTSW |
1 |
132,529,707 (GRCm39) |
critical splice donor site |
probably null |
|
|
R7084:Nfasc
|
UTSW |
1 |
132,498,247 (GRCm39) |
missense |
unknown |
|
|
R7275:Nfasc
|
UTSW |
1 |
132,562,001 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7286:Nfasc
|
UTSW |
1 |
132,529,790 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7682:Nfasc
|
UTSW |
1 |
132,501,511 (GRCm39) |
missense |
unknown |
|
|
R7838:Nfasc
|
UTSW |
1 |
132,533,287 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7871:Nfasc
|
UTSW |
1 |
132,527,751 (GRCm39) |
missense |
not run |
|
|
R7938:Nfasc
|
UTSW |
1 |
132,533,269 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8083:Nfasc
|
UTSW |
1 |
132,524,320 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8482:Nfasc
|
UTSW |
1 |
132,532,827 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9027:Nfasc
|
UTSW |
1 |
132,539,343 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9164:Nfasc
|
UTSW |
1 |
132,562,544 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9488:Nfasc
|
UTSW |
1 |
132,527,866 (GRCm39) |
missense |
possibly damaging |
0.68 |
|
R9651:Nfasc
|
UTSW |
1 |
132,527,791 (GRCm39) |
missense |
probably benign |
0.04 |
|
Z1176:Nfasc
|
UTSW |
1 |
132,562,376 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1177:Nfasc
|
UTSW |
1 |
132,559,576 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Posted On |
2016-08-02 |
Incidental Mutation