Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL03008:Bst1'

407684

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Bst1

Ensembl Gene

ENSMUSG00000029082

Gene Name

bone marrow stromal cell antigen 1

Synonyms

Bsta1, CD157, Bp3, 114/A10, Ly65

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.057) question?

Stock #

IGL03008

Quality Score

Status

Chromosome

Chromosomal Location

43976235-44000810 bp(+) (GRCm39)

Type of Mutation

critical splice acceptor site

DNA Base Change (assembly)

A to G at 43983604 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000098796 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000101237] [ENSMUST00000114047] [ENSMUST00000126976]

AlphaFold

no structure available at present

Predicted Effect

probably null
Transcript: ENSMUST00000101237

SMART Domains

Protein: ENSMUSP00000098796
Gene: ENSMUSG00000029082

Domain	Start	End	E-Value	Type
signal peptide	1	27	N/A	INTRINSIC
Pfam:Rib_hydrolayse	35	273	5.9e-103	PFAM
low complexity region	277	288	N/A	INTRINSIC
low complexity region	295	311	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000114047

SMART Domains

Protein: ENSMUSP00000109681
Gene: ENSMUSG00000039753

Domain	Start	End	E-Value	Type
Pfam:Hemerythrin	19	132	4.4e-11	PFAM
FBOX	202	242	2.31e-9	SMART
low complexity region	283	304	N/A	INTRINSIC
LRR	349	373	2.43e2	SMART
LRR	376	401	4.87e-4	SMART
low complexity region	475	486	N/A	INTRINSIC
LRR	590	615	2.45e0	SMART
LRR	618	643	4.65e-1	SMART
Blast:LRR	644	675	2e-13	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000118126

SMART Domains

Protein: ENSMUSP00000113593
Gene: ENSMUSG00000029082

Domain	Start	End	E-Value	Type
Pfam:Rib_hydrolayse	1	164	3.8e-69	PFAM
low complexity region	168	179	N/A	INTRINSIC
low complexity region	186	202	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000126976

SMART Domains

Protein: ENSMUSP00000143382
Gene: ENSMUSG00000029082

Domain	Start	End	E-Value	Type
signal peptide	1	27	N/A	INTRINSIC
PDB:1ISM\|B	28	54	2e-7	PDB
SCOP:d1isia_	29	56	6e-12	SMART

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Bone marrow stromal cell antigen-1 is a stromal cell line-derived glycosylphosphatidylinositol-anchored molecule that facilitates pre-B-cell growth. The deduced amino acid sequence exhibits 33% similarity with CD38. BST1 expression is enhanced in bone marrow stromal cell lines derived from patients with rheumatoid arthritis. The polyclonal B-cell abnormalities in rheumatoid arthritis may be, at least in part, attributed to BST1 overexpression in the stromal cell population. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null mice show delayed peritoneal B-1 cell development and a rise in CD38^low/- B-lineage cells in bone marrow and spleen. The systemic thymus-independent-2 antigen-induced IgG3 and mucosal thymus-dependent antigen-elicited IgA responses are selectively impaired. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aga	T	C	8: 53,964,861 (GRCm39)	S8P	probably benign	Het
Ankrd34c	C	T	9: 89,612,337 (GRCm39)	M1I	probably null	Het
Ankrd44	T	C	1: 54,805,968 (GRCm39)	H146R	probably damaging	Het
Btbd8	T	G	5: 107,639,464 (GRCm39)		probably null	Het
Cdh12	A	T	15: 21,480,416 (GRCm39)	I211F	probably damaging	Het
Cenpj	G	T	14: 56,764,406 (GRCm39)	D1335E	probably benign	Het
Clpx	G	A	9: 65,230,057 (GRCm39)	V502I	possibly damaging	Het
Cntnap4	T	C	8: 113,500,222 (GRCm39)	S505P	probably benign	Het
Cog2	T	C	8: 125,262,131 (GRCm39)		probably benign	Het
Cped1	A	G	6: 22,233,601 (GRCm39)	Q819R	probably benign	Het
Cspg4	A	G	9: 56,805,759 (GRCm39)	E2190G	possibly damaging	Het
Ctsa	G	A	2: 164,679,368 (GRCm39)	R359Q	probably damaging	Het
Cul9	A	G	17: 46,813,623 (GRCm39)		probably benign	Het
Dab1	G	T	4: 104,584,777 (GRCm39)	V306F	probably damaging	Het
Dysf	A	G	6: 84,050,876 (GRCm39)	I438V	probably benign	Het
Eif4g3	G	T	4: 137,847,699 (GRCm39)	G380W	probably damaging	Het
Exd1	T	A	2: 119,350,862 (GRCm39)	K466N	probably benign	Het
Eya3	A	C	4: 132,434,294 (GRCm39)	D325A	probably damaging	Het
Fmn1	A	G	2: 113,195,445 (GRCm39)	T382A	unknown	Het
Fry	T	A	5: 150,269,021 (GRCm39)	D106E	possibly damaging	Het
Gm21957	T	A	7: 124,818,733 (GRCm39)		noncoding transcript	Het
Gm44511	A	G	6: 128,761,059 (GRCm39)		probably benign	Het
Itga4	A	G	2: 79,155,982 (GRCm39)	I983V	probably benign	Het
Lrpprc	A	T	17: 85,058,675 (GRCm39)	D5E	probably benign	Het
Lrrc37	T	C	11: 103,511,293 (GRCm39)	E225G	unknown	Het
Ltbp4	G	T	7: 27,023,789 (GRCm39)	N747K	probably damaging	Het
Minar1	A	G	9: 89,478,731 (GRCm39)	Y772H	probably damaging	Het
Mlh3	T	C	12: 85,287,625 (GRCm39)	Q1308R	probably benign	Het
Mtfr2	T	A	10: 20,229,185 (GRCm39)	C63S	possibly damaging	Het
Myh11	T	A	16: 14,022,617 (GRCm39)	M1661L	probably benign	Het
Myo1c	T	C	11: 75,549,240 (GRCm39)	M137T	probably benign	Het
Myocd	A	C	11: 65,078,392 (GRCm39)	L340V	probably damaging	Het
Napsa	A	T	7: 44,235,220 (GRCm39)	Q335L	possibly damaging	Het
Nlrp4b	C	A	7: 10,448,516 (GRCm39)	Q240K	probably benign	Het
Npepps	A	C	11: 97,128,984 (GRCm39)	F400C	probably damaging	Het
Nxpe4	A	T	9: 48,304,738 (GRCm39)	E275V	probably benign	Het
Ofd1	T	C	X: 165,192,530 (GRCm39)	D501G	probably benign	Het
Or13a19	T	C	7: 139,903,445 (GRCm39)	Y278H	probably damaging	Het
Or4f6	A	G	2: 111,838,868 (GRCm39)	I221T	possibly damaging	Het
Or5p79	T	G	7: 108,221,490 (GRCm39)	L157R	probably damaging	Het
Or8k41	A	T	2: 86,313,678 (GRCm39)	M136K	probably damaging	Het
P2ry1	A	T	3: 60,910,947 (GRCm39)	T29S	probably benign	Het
Papss1	T	C	3: 131,290,860 (GRCm39)	V201A	possibly damaging	Het
Paxip1	A	G	5: 27,957,764 (GRCm39)	V864A	probably benign	Het
Pcdhgc5	T	A	18: 37,954,887 (GRCm39)	H720Q	probably benign	Het
Pdxdc1	T	C	16: 13,694,023 (GRCm39)	N133S	possibly damaging	Het
Prkar1a	T	C	11: 109,544,690 (GRCm39)	I27T	probably damaging	Het
Rnf10	G	T	5: 115,389,355 (GRCm39)	H271N	possibly damaging	Het
Scn9a	A	G	2: 66,392,855 (GRCm39)	S246P	probably damaging	Het
Sertad2	G	T	11: 20,597,798 (GRCm39)		probably benign	Het
Slc22a27	A	G	19: 7,887,067 (GRCm39)	I274T	possibly damaging	Het
Slc22a5	A	T	11: 53,782,058 (GRCm39)	V103E	probably damaging	Het
Slc5a9	A	T	4: 111,748,138 (GRCm39)	F225I	probably benign	Het
Slc6a3	G	A	13: 73,706,404 (GRCm39)		probably null	Het
Smcr8	A	G	11: 60,669,287 (GRCm39)	E145G	probably damaging	Het
Spen	A	T	4: 141,203,448 (GRCm39)	D1726E	possibly damaging	Het
Sphkap	A	T	1: 83,254,552 (GRCm39)	S779T	probably damaging	Het
Stag1	A	T	9: 100,658,844 (GRCm39)	N144Y	probably damaging	Het
Strada	T	C	11: 106,061,783 (GRCm39)	H156R	probably damaging	Het
Stxbp2	A	T	8: 3,691,971 (GRCm39)	I538F	probably benign	Het
Tas2r138	A	C	6: 40,590,116 (GRCm39)	D43E	probably damaging	Het
Tdpoz3	A	T	3: 93,733,642 (GRCm39)	K106*	probably null	Het
Trbv13-1	A	G	6: 41,093,229 (GRCm39)	D54G	probably damaging	Het
Ttc39b	A	G	4: 83,165,932 (GRCm39)	V218A	probably benign	Het
Ttn	G	A	2: 76,611,203 (GRCm39)	T15697I	probably damaging	Het
Ugt2b38	G	A	5: 87,560,282 (GRCm39)	T344I	probably benign	Het
Vmn2r94	T	C	17: 18,477,908 (GRCm39)	M168V	probably benign	Het
Wdr11	T	C	7: 129,208,715 (GRCm39)		probably benign	Het
Wipf2	T	C	11: 98,783,554 (GRCm39)		probably benign	Het
Zranb2	T	A	3: 157,252,302 (GRCm39)		probably null	Het

Other mutations in Bst1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01906:Bst1	APN	5	43,994,861 (GRCm39)	missense	probably damaging	0.98
IGL02146:Bst1	APN	5	43,983,678 (GRCm39)	missense	probably damaging	1.00
ossobuco	UTSW	5	43,977,932 (GRCm39)	missense	probably benign	0.04
R0145:Bst1	UTSW	5	43,976,414 (GRCm39)	missense	probably damaging	1.00
R1158:Bst1	UTSW	5	43,997,834 (GRCm39)	critical splice donor site	probably null
R1172:Bst1	UTSW	5	43,982,750 (GRCm39)	splice site	probably null
R3926:Bst1	UTSW	5	43,997,796 (GRCm39)	missense	possibly damaging	0.81
R4438:Bst1	UTSW	5	43,982,682 (GRCm39)	splice site	probably null
R4622:Bst1	UTSW	5	43,976,261 (GRCm39)	utr 5 prime	probably benign
R4852:Bst1	UTSW	5	43,977,867 (GRCm39)	missense	probably benign	0.16
R4936:Bst1	UTSW	5	43,997,799 (GRCm39)	missense	probably damaging	0.97
R6048:Bst1	UTSW	5	43,976,306 (GRCm39)	intron	probably benign
R6505:Bst1	UTSW	5	43,977,932 (GRCm39)	missense	probably benign	0.04
R7442:Bst1	UTSW	5	43,979,084 (GRCm39)	missense	probably benign	0.00
R7643:Bst1	UTSW	5	43,997,791 (GRCm39)	missense	probably benign	0.02
R8849:Bst1	UTSW	5	43,977,927 (GRCm39)	missense	possibly damaging	0.87
R8900:Bst1	UTSW	5	43,977,942 (GRCm39)	missense	possibly damaging	0.87
R8956:Bst1	UTSW	5	43,982,716 (GRCm39)	nonsense	probably null
R9010:Bst1	UTSW	5	43,982,695 (GRCm39)	missense	possibly damaging	0.81
Z1177:Bst1	UTSW	5	43,976,374 (GRCm39)	missense	probably damaging	0.99

Posted On

2016-08-02