Incidental Mutation 'IGL03010:Lypd2'
ID 407742
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Lypd2
Ensembl Gene ENSMUSG00000022595
Gene Name Ly6/Plaur domain containing 2
Synonyms 0610005K03Rik
Accession Numbers
Essential gene? Probably non essential (E-score: 0.118) question?
Stock # IGL03010
Quality Score
Status
Chromosome 15
Chromosomal Location 74604096-74606178 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 74606102 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Isoleucine to Threonine at position 12 (I12T)
Ref Sequence ENSEMBL: ENSMUSP00000023260 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000023260]
AlphaFold Q9DD23
Predicted Effect probably benign
Transcript: ENSMUST00000023260
AA Change: I12T

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
SMART Domains Protein: ENSMUSP00000023260
Gene: ENSMUSG00000022595
AA Change: I12T

DomainStartEndE-ValueType
signal peptide 1 22 N/A INTRINSIC
LU 23 114 1.5e-9 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000188716
Coding Region Coverage
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 37 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Acvr1b A G 15: 101,100,959 (GRCm39) R374G probably damaging Het
Adamts4 T C 1: 171,078,985 (GRCm39) C202R probably damaging Het
Afap1l1 T C 18: 61,876,390 (GRCm39) D409G probably benign Het
Atp6v1b2 T C 8: 69,558,534 (GRCm39) I334T probably damaging Het
Btn2a2 A T 13: 23,670,375 (GRCm39) Y119* probably null Het
Cct2 T C 10: 116,894,019 (GRCm39) D245G probably damaging Het
Ercc2 A G 7: 19,125,491 (GRCm39) K486E possibly damaging Het
Fam186b T C 15: 99,178,508 (GRCm39) S273G possibly damaging Het
Fbxw24 T A 9: 109,452,678 (GRCm39) I106L probably benign Het
Ghrhr T C 6: 55,361,742 (GRCm39) I303T probably damaging Het
Habp2 T C 19: 56,299,655 (GRCm39) probably null Het
Haus3 T A 5: 34,323,631 (GRCm39) E326D probably benign Het
Hdac7 C T 15: 97,691,810 (GRCm39) probably null Het
Hectd2 T A 19: 36,593,002 (GRCm39) D722E probably benign Het
Il20ra G T 10: 19,624,960 (GRCm39) G80W probably damaging Het
Jag1 T C 2: 136,935,118 (GRCm39) probably benign Het
Lrp1b A G 2: 42,213,618 (GRCm39) S65P possibly damaging Het
Nat2 T A 8: 67,954,664 (GRCm39) L258Q probably damaging Het
Nwd1 T C 8: 73,414,688 (GRCm39) probably benign Het
Or2y1b T A 11: 49,208,973 (GRCm39) V200E probably damaging Het
Or5ac24 A G 16: 59,165,135 (GRCm39) probably benign Het
Or6c3 G T 10: 129,308,843 (GRCm39) C94F probably damaging Het
Pcdh15 T A 10: 74,221,777 (GRCm39) D692E probably damaging Het
Prkcz G T 4: 155,371,262 (GRCm39) H134N probably damaging Het
Prmt8 T C 6: 127,706,498 (GRCm39) T98A probably benign Het
Rps6kc1 C A 1: 190,643,803 (GRCm39) E19* probably null Het
Rrp8 A G 7: 105,383,598 (GRCm39) S223P probably benign Het
Septin10 G A 10: 59,006,777 (GRCm39) probably benign Het
Serpinb7 T C 1: 107,379,741 (GRCm39) probably benign Het
Spaca6 C A 17: 18,058,667 (GRCm39) Q72K probably benign Het
Spag1 A G 15: 36,233,419 (GRCm39) H712R probably benign Het
Spg11 C A 2: 121,918,801 (GRCm39) A943S probably damaging Het
Tmem104 T C 11: 115,134,360 (GRCm39) S298P probably benign Het
Ttn A G 2: 76,565,432 (GRCm39) I28265T probably damaging Het
Usp33 G T 3: 152,074,233 (GRCm39) V360F probably benign Het
Vmn2r113 A G 17: 23,175,038 (GRCm39) T550A possibly damaging Het
Zscan4d A T 7: 10,897,070 (GRCm39) V128D probably damaging Het
Other mutations in Lypd2
AlleleSourceChrCoordTypePredicted EffectPPH Score
R2340:Lypd2 UTSW 15 74,606,103 (GRCm39) missense probably benign
R5124:Lypd2 UTSW 15 74,604,347 (GRCm39) missense probably benign 0.21
R5368:Lypd2 UTSW 15 74,604,908 (GRCm39) missense probably benign 0.01
R5493:Lypd2 UTSW 15 74,606,127 (GRCm39) missense probably benign 0.01
R7209:Lypd2 UTSW 15 74,604,266 (GRCm39) missense probably benign 0.22
R7363:Lypd2 UTSW 15 74,604,848 (GRCm39) missense probably damaging 1.00
R8119:Lypd2 UTSW 15 74,604,881 (GRCm39) missense probably benign 0.05
Posted On 2016-08-02