Incidental Mutation 'IGL03033:Copb2'
ID 408551
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Copb2
Ensembl Gene ENSMUSG00000032458
Gene Name COPI coat complex subunit beta 2
Synonyms
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # IGL03033
Quality Score
Status
Chromosome 9
Chromosomal Location 98445784-98470428 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 98452426 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Asparagine to Serine at position 70 (N70S)
Ref Sequence ENSEMBL: ENSMUSP00000035033 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000035033]
AlphaFold O55029
Predicted Effect probably benign
Transcript: ENSMUST00000035033
AA Change: N70S

PolyPhen 2 Score 0.102 (Sensitivity: 0.93; Specificity: 0.86)
SMART Domains Protein: ENSMUSP00000035033
Gene: ENSMUSG00000032458
AA Change: N70S

DomainStartEndE-ValueType
WD40 4 43 1.18e-1 SMART
WD40 46 85 3.9e-2 SMART
WD40 88 127 4.05e-9 SMART
WD40 131 171 1.51e-8 SMART
WD40 174 215 7.97e-8 SMART
WD40 218 257 5.9e-11 SMART
Pfam:Coatomer_WDAD 319 763 3.2e-176 PFAM
low complexity region 876 892 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000188913
Predicted Effect noncoding transcript
Transcript: ENSMUST00000214600
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The Golgi coatomer complex (see MIM 601924) constitutes the coat of nonclathrin-coated vesicles and is essential for Golgi budding and vesicular trafficking. It consists of 7 protein subunits, including COPB2.[supplied by OMIM, Jul 2002]
PHENOTYPE: Mice homozygous for a null mutation display early embryonic lethality. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 46 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aoc1l2 A T 6: 48,909,452 (GRCm39) T566S probably benign Het
Ap3b1 A G 13: 94,585,003 (GRCm39) T405A probably benign Het
Bicd2 G T 13: 49,533,396 (GRCm39) V587L probably benign Het
Bsn A T 9: 107,993,192 (GRCm39) D853E probably damaging Het
Cacna1i C A 15: 80,246,440 (GRCm39) N611K probably damaging Het
Capn11 A G 17: 45,953,473 (GRCm39) L227P probably damaging Het
Ddb1 T C 19: 10,603,290 (GRCm39) V866A possibly damaging Het
Dst A G 1: 34,208,826 (GRCm39) probably benign Het
Ero1b A G 13: 12,596,551 (GRCm39) Y117C probably damaging Het
Esyt1 T G 10: 128,352,252 (GRCm39) R758S probably benign Het
Gm20441 A G 10: 75,607,326 (GRCm39) F55S probably damaging Het
Gm20547 A T 17: 35,078,492 (GRCm39) M362K probably damaging Het
Gucy1b2 A G 14: 62,653,393 (GRCm39) V334A probably benign Het
Hnrnph3 A T 10: 62,853,958 (GRCm39) F53L probably benign Het
Kcnk18 C T 19: 59,223,616 (GRCm39) P254S probably benign Het
Lrfn5 T A 12: 61,886,833 (GRCm39) L207Q probably damaging Het
Lrp3 T C 7: 34,902,052 (GRCm39) M589V possibly damaging Het
Nlrp1b A G 11: 71,052,665 (GRCm39) V918A probably benign Het
Nsg2 A G 11: 31,951,836 (GRCm39) T29A probably damaging Het
Or51b4 T A 7: 103,530,724 (GRCm39) H242L probably damaging Het
Pank4 C T 4: 155,059,172 (GRCm39) T435I probably damaging Het
Prom1 C T 5: 44,163,502 (GRCm39) probably null Het
Prr14 G T 7: 127,071,135 (GRCm39) L3F probably damaging Het
Rfx7 A T 9: 72,440,271 (GRCm39) probably benign Het
Rhbdl3 A G 11: 80,237,653 (GRCm39) N295S probably damaging Het
Ripk3 A G 14: 56,024,622 (GRCm39) probably benign Het
Ror1 A T 4: 100,269,092 (GRCm39) N310I possibly damaging Het
Rpl23a T C 11: 78,072,408 (GRCm39) Y74C possibly damaging Het
Rtp3 A T 9: 110,815,162 (GRCm39) probably benign Het
Sbno1 A T 5: 124,514,213 (GRCm39) N1326K probably damaging Het
Sepsecs T C 5: 52,818,018 (GRCm39) N253S probably damaging Het
Setd2 A C 9: 110,380,343 (GRCm39) E1386A possibly damaging Het
Sf3b3 T C 8: 111,537,596 (GRCm39) I1211V possibly damaging Het
Sh3tc2 G A 18: 62,107,549 (GRCm39) V187M possibly damaging Het
Slc30a6 G T 17: 74,716,373 (GRCm39) E136* probably null Het
Sptan1 T A 2: 29,881,045 (GRCm39) V438E probably damaging Het
Stab2 A G 10: 86,832,667 (GRCm39) probably null Het
Sult2a1 T A 7: 13,566,635 (GRCm39) probably benign Het
Tmem198 A G 1: 75,459,612 (GRCm39) D189G possibly damaging Het
Tnfrsf8 C A 4: 145,019,219 (GRCm39) L205F possibly damaging Het
Vmn1r68 T A 7: 10,262,074 (GRCm39) E8V probably damaging Het
Wnk3 G A X: 150,059,924 (GRCm39) D742N probably damaging Het
Xpc A T 6: 91,468,297 (GRCm39) probably null Het
Zfp113 A T 5: 138,149,458 (GRCm39) probably benign Het
Zfp120 A T 2: 149,961,794 (GRCm39) D51E probably benign Het
Zfp473 C T 7: 44,382,522 (GRCm39) V603M probably benign Het
Other mutations in Copb2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00093:Copb2 APN 9 98,450,130 (GRCm39) missense probably benign 0.00
IGL00496:Copb2 APN 9 98,452,371 (GRCm39) missense probably benign 0.00
IGL00518:Copb2 APN 9 98,464,947 (GRCm39) missense possibly damaging 0.95
IGL00642:Copb2 APN 9 98,461,086 (GRCm39) missense probably damaging 1.00
IGL00793:Copb2 APN 9 98,467,057 (GRCm39) missense probably benign
IGL00806:Copb2 APN 9 98,452,717 (GRCm39) missense probably damaging 0.97
IGL01599:Copb2 APN 9 98,463,203 (GRCm39) missense probably damaging 0.98
IGL01906:Copb2 APN 9 98,462,383 (GRCm39) missense probably benign 0.10
IGL02129:Copb2 APN 9 98,467,976 (GRCm39) unclassified probably benign
IGL02138:Copb2 APN 9 98,469,605 (GRCm39) missense probably benign
R0646:Copb2 UTSW 9 98,445,528 (GRCm39) unclassified probably benign
R0709:Copb2 UTSW 9 98,445,220 (GRCm39) unclassified probably benign
R1631:Copb2 UTSW 9 98,462,213 (GRCm39) missense probably benign 0.00
R2510:Copb2 UTSW 9 98,453,701 (GRCm39) splice site probably benign
R4862:Copb2 UTSW 9 98,463,320 (GRCm39) missense probably damaging 1.00
R5322:Copb2 UTSW 9 98,468,029 (GRCm39) missense probably benign 0.03
R5593:Copb2 UTSW 9 98,469,091 (GRCm39) critical splice acceptor site probably null
R5745:Copb2 UTSW 9 98,456,164 (GRCm39) missense probably damaging 0.99
R5859:Copb2 UTSW 9 98,450,161 (GRCm39) missense probably benign 0.17
R5990:Copb2 UTSW 9 98,452,378 (GRCm39) missense probably damaging 1.00
R7109:Copb2 UTSW 9 98,463,333 (GRCm39) critical splice donor site probably null
R7124:Copb2 UTSW 9 98,459,106 (GRCm39) missense probably damaging 0.98
R7211:Copb2 UTSW 9 98,456,198 (GRCm39) missense probably damaging 1.00
R7829:Copb2 UTSW 9 98,470,147 (GRCm39) missense probably damaging 0.99
R7960:Copb2 UTSW 9 98,462,407 (GRCm39) missense possibly damaging 0.65
R8311:Copb2 UTSW 9 98,450,072 (GRCm39) missense possibly damaging 0.78
R8537:Copb2 UTSW 9 98,469,672 (GRCm39) missense probably null 0.00
R8982:Copb2 UTSW 9 98,456,164 (GRCm39) missense probably damaging 0.99
R9539:Copb2 UTSW 9 98,467,983 (GRCm39) critical splice acceptor site probably null
R9762:Copb2 UTSW 9 98,464,901 (GRCm39) missense probably benign 0.38
R9800:Copb2 UTSW 9 98,461,081 (GRCm39) missense probably damaging 0.99
Z1176:Copb2 UTSW 9 98,468,199 (GRCm39) missense probably benign 0.16
Posted On 2016-08-02