Incidental Mutation 'IGL03038:D130043K22Rik'
| ID |
408807 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
D130043K22Rik
|
| Ensembl Gene |
ENSMUSG00000006711 |
| Gene Name |
RIKEN cDNA D130043K22 gene |
| Synonyms |
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
IGL03038
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
13 |
| Chromosomal Location |
24845135-24901270 bp(+) (GRCm38) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 24879619 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Glutamic Acid to Glycine
at position 681
(E681G)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000116004
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000006893]
[ENSMUST00000141572]
|
| AlphaFold |
Q5SZV5 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000006893
AA Change: E681G
PolyPhen 2
Score 0.880 (Sensitivity: 0.82; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000006893
Gene: ENSMUSG00000006711
AA Change: E681G
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
22 |
N/A |
INTRINSIC |
|
Blast:MANEC
|
23 |
102 |
3e-44 |
BLAST |
|
low complexity region
|
236 |
270 |
N/A |
INTRINSIC |
|
FN3
|
332 |
427 |
3.43e1 |
SMART |
|
PKD
|
345 |
436 |
3.96e0 |
SMART |
|
FN3
|
435 |
521 |
3.08e1 |
SMART |
|
PKD
|
444 |
533 |
7.12e-10 |
SMART |
|
PKD
|
539 |
629 |
1.46e-6 |
SMART |
|
PKD
|
630 |
723 |
6.75e-11 |
SMART |
|
FN3
|
634 |
711 |
5.1e1 |
SMART |
|
FN3
|
728 |
808 |
9.15e1 |
SMART |
|
PKD
|
729 |
820 |
4.38e-10 |
SMART |
|
transmembrane domain
|
965 |
987 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000141572
AA Change: E681G
PolyPhen 2
Score 0.995 (Sensitivity: 0.68; Specificity: 0.97)
|
| SMART Domains |
Protein: ENSMUSP00000116004
Gene: ENSMUSG00000006711
AA Change: E681G
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
22 |
N/A |
INTRINSIC |
|
Blast:MANEC
|
23 |
102 |
2e-44 |
BLAST |
|
low complexity region
|
236 |
270 |
N/A |
INTRINSIC |
|
FN3
|
332 |
427 |
3.43e1 |
SMART |
|
PKD
|
345 |
436 |
3.96e0 |
SMART |
|
FN3
|
435 |
521 |
3.08e1 |
SMART |
|
PKD
|
444 |
533 |
7.12e-10 |
SMART |
|
PKD
|
539 |
629 |
1.46e-6 |
SMART |
|
PKD
|
630 |
723 |
6.75e-11 |
SMART |
|
FN3
|
634 |
711 |
5.1e1 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000169411
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: This gene encodes a transmembrane protein that contains a large extracellular domain with multiple polycystic kidney disease (PKD) domains. The encoded protein may play a role in the development of the cerebral cortex by regulating neuronal migration and cell adhesion. Single nucleotide polymorphisms in a similar gene in human are associated with dyslexia. Alternatively spliced transcript variants have been identifed. [provided by RefSeq, May 2015]
PHENOTYPE: Homozygous knockout results in a mild behavioral phenotype: increased prepulse inhibition in males under certain conditions and decreased anxiety-related response. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 41 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Acadsb |
T |
C |
7: 131,428,456 (GRCm38) |
Y111H |
probably damaging |
Het |
| Arhgef6 |
C |
T |
X: 57,245,606 (GRCm38) |
V262I |
probably benign |
Het |
| Arsk |
C |
A |
13: 76,065,513 (GRCm38) |
|
probably benign |
Het |
| Ces1b |
T |
C |
8: 93,067,052 (GRCm38) |
E303G |
probably benign |
Het |
| Chst9 |
T |
C |
18: 15,495,303 (GRCm38) |
Q55R |
probably benign |
Het |
| Cntnap3 |
A |
T |
13: 64,741,025 (GRCm38) |
D1153E |
possibly damaging |
Het |
| Fhad1 |
T |
C |
4: 142,002,494 (GRCm38) |
E66G |
probably benign |
Het |
| Flii |
T |
C |
11: 60,724,832 (GRCm38) |
T69A |
probably benign |
Het |
| Foxl1 |
A |
C |
8: 121,128,419 (GRCm38) |
E153A |
probably damaging |
Het |
| Gstm3 |
T |
C |
3: 107,966,169 (GRCm38) |
D162G |
possibly damaging |
Het |
| Gtpbp3 |
G |
A |
8: 71,489,303 (GRCm38) |
V96I |
possibly damaging |
Het |
| Insig2 |
G |
A |
1: 121,319,674 (GRCm38) |
T56I |
probably damaging |
Het |
| Kif13a |
A |
G |
13: 46,772,838 (GRCm38) |
L264P |
probably damaging |
Het |
| Lama3 |
T |
G |
18: 12,419,250 (GRCm38) |
C420G |
probably damaging |
Het |
| Lrp2 |
C |
T |
2: 69,475,464 (GRCm38) |
G2918S |
probably damaging |
Het |
| Lrrc8b |
T |
C |
5: 105,481,492 (GRCm38) |
L568P |
probably damaging |
Het |
| Lyl1 |
C |
T |
8: 84,702,671 (GRCm38) |
P3L |
possibly damaging |
Het |
| Malrd1 |
G |
A |
2: 16,127,967 (GRCm38) |
D1900N |
unknown |
Het |
| Mastl |
C |
A |
2: 23,140,615 (GRCm38) |
|
probably benign |
Het |
| Med24 |
T |
G |
11: 98,716,184 (GRCm38) |
T276P |
possibly damaging |
Het |
| Naip1 |
A |
C |
13: 100,437,333 (GRCm38) |
Y239* |
probably null |
Het |
| Nhsl2 |
A |
G |
X: 102,078,885 (GRCm38) |
K765E |
probably damaging |
Het |
| Npy |
A |
G |
6: 49,823,608 (GRCm38) |
N4S |
probably benign |
Het |
| Nsun2 |
A |
G |
13: 69,619,584 (GRCm38) |
D188G |
probably damaging |
Het |
| Olfr794 |
A |
G |
10: 129,570,921 (GRCm38) |
T89A |
probably benign |
Het |
| Pde1a |
C |
A |
2: 79,887,946 (GRCm38) |
|
probably benign |
Het |
| Pik3cb |
G |
A |
9: 99,065,597 (GRCm38) |
A509V |
probably damaging |
Het |
| Pou2f2 |
C |
T |
7: 25,097,152 (GRCm38) |
S315N |
probably damaging |
Het |
| Prdm2 |
A |
C |
4: 143,134,001 (GRCm38) |
S906R |
probably damaging |
Het |
| Prkaca |
C |
A |
8: 83,994,951 (GRCm38) |
Q300K |
probably benign |
Het |
| Prox2 |
T |
C |
12: 85,095,264 (GRCm38) |
D55G |
possibly damaging |
Het |
| Ryr3 |
T |
A |
2: 112,668,120 (GRCm38) |
T3612S |
possibly damaging |
Het |
| S1pr1 |
T |
A |
3: 115,712,694 (GRCm38) |
I84L |
possibly damaging |
Het |
| Slc47a1 |
C |
T |
11: 61,353,092 (GRCm38) |
V384M |
probably benign |
Het |
| Slc6a20b |
T |
C |
9: 123,597,329 (GRCm38) |
N497S |
possibly damaging |
Het |
| Spen |
C |
A |
4: 141,538,239 (GRCm38) |
R3L |
unknown |
Het |
| Stxbp2 |
A |
T |
8: 3,641,971 (GRCm38) |
I538F |
probably benign |
Het |
| Ttll6 |
T |
C |
11: 96,151,960 (GRCm38) |
F444S |
probably damaging |
Het |
| Vwce |
T |
A |
19: 10,646,671 (GRCm38) |
Y309N |
possibly damaging |
Het |
| Vwf |
T |
C |
6: 125,604,157 (GRCm38) |
L586P |
possibly damaging |
Het |
| Wdr35 |
T |
C |
12: 8,974,185 (GRCm38) |
|
probably benign |
Het |
|
| Other mutations in D130043K22Rik |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00850:D130043K22Rik
|
APN |
13 |
24,867,174 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL01114:D130043K22Rik
|
APN |
13 |
24,857,156 (GRCm38) |
missense |
probably damaging |
0.99 |
|
IGL01412:D130043K22Rik
|
APN |
13 |
24,887,860 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL01542:D130043K22Rik
|
APN |
13 |
24,876,037 (GRCm38) |
splice site |
probably null |
|
|
IGL01615:D130043K22Rik
|
APN |
13 |
24,899,796 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL01705:D130043K22Rik
|
APN |
13 |
24,857,941 (GRCm38) |
missense |
probably benign |
0.00 |
|
IGL02220:D130043K22Rik
|
APN |
13 |
24,883,755 (GRCm38) |
missense |
possibly damaging |
0.95 |
|
IGL02229:D130043K22Rik
|
APN |
13 |
24,875,924 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02576:D130043K22Rik
|
APN |
13 |
24,856,870 (GRCm38) |
missense |
possibly damaging |
0.74 |
|
IGL03117:D130043K22Rik
|
APN |
13 |
24,889,842 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL03014:D130043K22Rik
|
UTSW |
13 |
24,858,092 (GRCm38) |
missense |
possibly damaging |
0.88 |
|
R0019:D130043K22Rik
|
UTSW |
13 |
24,880,812 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0019:D130043K22Rik
|
UTSW |
13 |
24,880,812 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0020:D130043K22Rik
|
UTSW |
13 |
24,854,492 (GRCm38) |
utr 5 prime |
probably benign |
|
|
R0172:D130043K22Rik
|
UTSW |
13 |
24,872,406 (GRCm38) |
missense |
probably benign |
0.16 |
|
R0276:D130043K22Rik
|
UTSW |
13 |
24,858,045 (GRCm38) |
missense |
possibly damaging |
0.92 |
|
R0304:D130043K22Rik
|
UTSW |
13 |
24,864,815 (GRCm38) |
missense |
probably benign |
0.07 |
|
R0335:D130043K22Rik
|
UTSW |
13 |
24,887,877 (GRCm38) |
missense |
probably damaging |
0.98 |
|
R0744:D130043K22Rik
|
UTSW |
13 |
24,863,580 (GRCm38) |
splice site |
probably benign |
|
|
R0833:D130043K22Rik
|
UTSW |
13 |
24,863,580 (GRCm38) |
splice site |
probably benign |
|
|
R0836:D130043K22Rik
|
UTSW |
13 |
24,863,580 (GRCm38) |
splice site |
probably benign |
|
|
R1270:D130043K22Rik
|
UTSW |
13 |
24,857,338 (GRCm38) |
missense |
probably benign |
0.00 |
|
R1433:D130043K22Rik
|
UTSW |
13 |
24,871,341 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1682:D130043K22Rik
|
UTSW |
13 |
24,882,556 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1772:D130043K22Rik
|
UTSW |
13 |
24,875,999 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1773:D130043K22Rik
|
UTSW |
13 |
24,882,602 (GRCm38) |
missense |
possibly damaging |
0.80 |
|
R1800:D130043K22Rik
|
UTSW |
13 |
24,883,894 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1956:D130043K22Rik
|
UTSW |
13 |
24,885,595 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R2255:D130043K22Rik
|
UTSW |
13 |
24,856,911 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R2445:D130043K22Rik
|
UTSW |
13 |
24,857,036 (GRCm38) |
missense |
probably benign |
0.04 |
|
R2568:D130043K22Rik
|
UTSW |
13 |
24,883,891 (GRCm38) |
missense |
probably damaging |
0.97 |
|
R4160:D130043K22Rik
|
UTSW |
13 |
24,862,696 (GRCm38) |
missense |
probably benign |
0.02 |
|
R4494:D130043K22Rik
|
UTSW |
13 |
24,871,356 (GRCm38) |
missense |
probably benign |
0.16 |
|
R4732:D130043K22Rik
|
UTSW |
13 |
24,899,665 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4733:D130043K22Rik
|
UTSW |
13 |
24,899,665 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4782:D130043K22Rik
|
UTSW |
13 |
24,878,040 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4799:D130043K22Rik
|
UTSW |
13 |
24,878,040 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4864:D130043K22Rik
|
UTSW |
13 |
24,863,612 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5155:D130043K22Rik
|
UTSW |
13 |
24,872,290 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5240:D130043K22Rik
|
UTSW |
13 |
24,877,977 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5383:D130043K22Rik
|
UTSW |
13 |
24,857,414 (GRCm38) |
missense |
probably benign |
0.02 |
|
R5493:D130043K22Rik
|
UTSW |
13 |
24,863,603 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6184:D130043K22Rik
|
UTSW |
13 |
24,885,591 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6305:D130043K22Rik
|
UTSW |
13 |
24,885,685 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6436:D130043K22Rik
|
UTSW |
13 |
24,877,935 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6980:D130043K22Rik
|
UTSW |
13 |
24,864,781 (GRCm38) |
missense |
probably damaging |
0.98 |
|
R7038:D130043K22Rik
|
UTSW |
13 |
24,893,408 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7085:D130043K22Rik
|
UTSW |
13 |
24,872,302 (GRCm38) |
missense |
possibly damaging |
0.95 |
|
R7147:D130043K22Rik
|
UTSW |
13 |
24,882,563 (GRCm38) |
missense |
probably benign |
0.31 |
|
R7384:D130043K22Rik
|
UTSW |
13 |
24,882,605 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7398:D130043K22Rik
|
UTSW |
13 |
24,893,377 (GRCm38) |
missense |
probably damaging |
0.97 |
|
R7584:D130043K22Rik
|
UTSW |
13 |
24,872,370 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7585:D130043K22Rik
|
UTSW |
13 |
24,885,585 (GRCm38) |
missense |
probably benign |
0.01 |
|
R7588:D130043K22Rik
|
UTSW |
13 |
24,887,893 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R7610:D130043K22Rik
|
UTSW |
13 |
24,876,002 (GRCm38) |
missense |
probably benign |
0.30 |
|
R7903:D130043K22Rik
|
UTSW |
13 |
24,876,012 (GRCm38) |
missense |
probably damaging |
0.98 |
|
R7966:D130043K22Rik
|
UTSW |
13 |
24,893,423 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8014:D130043K22Rik
|
UTSW |
13 |
24,856,702 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8374:D130043K22Rik
|
UTSW |
13 |
24,857,979 (GRCm38) |
missense |
probably benign |
0.07 |
|
R8543:D130043K22Rik
|
UTSW |
13 |
24,889,869 (GRCm38) |
missense |
probably benign |
0.08 |
|
R8775:D130043K22Rik
|
UTSW |
13 |
24,856,999 (GRCm38) |
nonsense |
probably null |
|
|
R8775-TAIL:D130043K22Rik
|
UTSW |
13 |
24,856,999 (GRCm38) |
nonsense |
probably null |
|
|
R8806:D130043K22Rik
|
UTSW |
13 |
24,899,635 (GRCm38) |
missense |
probably benign |
0.11 |
|
R8916:D130043K22Rik
|
UTSW |
13 |
24,872,271 (GRCm38) |
missense |
probably benign |
|
|
R9209:D130043K22Rik
|
UTSW |
13 |
24,857,107 (GRCm38) |
missense |
possibly damaging |
0.96 |
|
R9524:D130043K22Rik
|
UTSW |
13 |
24,887,893 (GRCm38) |
missense |
possibly damaging |
0.89 |
|
R9743:D130043K22Rik
|
UTSW |
13 |
24,872,316 (GRCm38) |
missense |
probably damaging |
0.97 |
|
Z1177:D130043K22Rik
|
UTSW |
13 |
24,872,248 (GRCm38) |
missense |
possibly damaging |
0.79 |
|
Z1177:D130043K22Rik
|
UTSW |
13 |
24,856,834 (GRCm38) |
missense |
probably benign |
0.39 |
|
Z1177:D130043K22Rik
|
UTSW |
13 |
24,856,709 (GRCm38) |
missense |
probably damaging |
1.00 |
|
Z1177:D130043K22Rik
|
UTSW |
13 |
24,880,847 (GRCm38) |
missense |
probably damaging |
1.00 |
|
| Posted On |
2016-08-02 |
Incidental Mutation