Incidental Mutation 'IGL03059:Rtel1'
| ID |
409376 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Rtel1
|
| Ensembl Gene |
ENSMUSG00000038685 |
| Gene Name |
regulator of telomere elongation helicase 1 |
| Synonyms |
Nhl, Rtel, KIAA1088, C20ORF41 |
| Accession Numbers |
Ncbi RefSeq: NM_001001882.3, NM_001166665.1, NM_001166666.1, NM_001166667.1, NM_001166668.1; MGI: 2139369
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
IGL03059
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
2 |
| Chromosomal Location |
181319739-181356616 bp(+) (GRCm38) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 181350183 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Asparagine to Aspartic acid
at position 410
(N410D)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000116159
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000048608]
[ENSMUST00000054622]
[ENSMUST00000098971]
[ENSMUST00000108814]
[ENSMUST00000108815]
[ENSMUST00000148252]
|
| AlphaFold |
Q0VGM9 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000048608
AA Change: N594D
PolyPhen 2
Score 0.012 (Sensitivity: 0.96; Specificity: 0.78)
|
| SMART Domains |
Protein: ENSMUSP00000043563
Gene: ENSMUSG00000038685
AA Change: N594D
| Domain | Start | End | E-Value | Type |
|---|
|
DEXDc
|
13 |
292 |
9.88e-3 |
SMART |
|
HELICc
|
563 |
717 |
1.07e-62 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000054622
AA Change: N594D
PolyPhen 2
Score 0.012 (Sensitivity: 0.96; Specificity: 0.78)
|
| SMART Domains |
Protein: ENSMUSP00000053120
Gene: ENSMUSG00000038685
AA Change: N594D
| Domain | Start | End | E-Value | Type |
|---|
|
DEXDc
|
13 |
292 |
9.88e-3 |
SMART |
|
HELICc
|
563 |
717 |
1.07e-62 |
SMART |
|
low complexity region
|
1075 |
1092 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000098971
AA Change: N594D
PolyPhen 2
Score 0.012 (Sensitivity: 0.96; Specificity: 0.78)
|
| SMART Domains |
Protein: ENSMUSP00000096571
Gene: ENSMUSG00000038685
AA Change: N594D
| Domain | Start | End | E-Value | Type |
|---|
|
DEXDc
|
13 |
292 |
9.88e-3 |
SMART |
|
HELICc
|
563 |
717 |
1.07e-62 |
SMART |
|
low complexity region
|
1036 |
1053 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000108814
AA Change: N594D
PolyPhen 2
Score 0.012 (Sensitivity: 0.96; Specificity: 0.78)
|
| SMART Domains |
Protein: ENSMUSP00000104442
Gene: ENSMUSG00000038685
AA Change: N594D
| Domain | Start | End | E-Value | Type |
|---|
|
DEXDc
|
13 |
292 |
9.88e-3 |
SMART |
|
HELICc
|
563 |
717 |
1.07e-62 |
SMART |
|
low complexity region
|
1069 |
1086 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000108815
AA Change: N594D
PolyPhen 2
Score 0.012 (Sensitivity: 0.96; Specificity: 0.78)
|
| SMART Domains |
Protein: ENSMUSP00000104443
Gene: ENSMUSG00000038685
AA Change: N594D
| Domain | Start | End | E-Value | Type |
|---|
|
DEXDc
|
13 |
292 |
9.88e-3 |
SMART |
|
HELICc
|
563 |
717 |
1.07e-62 |
SMART |
|
low complexity region
|
1030 |
1047 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000125233
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000126842
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000130772
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000130935
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000139608
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000144648
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000146273
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000148252
AA Change: N410D
PolyPhen 2
Score 0.012 (Sensitivity: 0.96; Specificity: 0.78)
|
| SMART Domains |
Protein: ENSMUSP00000116159
Gene: ENSMUSG00000038685
AA Change: N410D
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:DEAD_2
|
1 |
88 |
1.3e-33 |
PFAM |
|
HELICc
|
379 |
533 |
1.07e-62 |
SMART |
|
low complexity region
|
858 |
875 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000147266
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000184751
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
Strain: 3772371; 3052235
Lethality: E11-E12
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a DNA helicase which functions in the stability, protection and elongation of telomeres and interacts with proteins in the shelterin complex known to protect telomeres during DNA replication. Mutations in this gene have been associated with dyskeratosis congenita and Hoyerall-Hreidarsson syndrome. Read-through transcription of this gene into the neighboring downstream gene, which encodes tumor necrosis factor receptor superfamily, member 6b, generates a non-coding transcript. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Sep 2013]
PHENOTYPE: Homozygous null mice display embryonic lethality with abnormal development of the neural tube, brain, heart, vasculature, placenta, and allantois and chromosomal abnormalities in differentiating cells. [provided by MGI curators]
|
| Allele List at MGI |
All alleles(33) : Targeted(5) Gene trapped(28)
|
| Other mutations in this stock |
Total: 37 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Ahsg |
T |
C |
16: 22,899,005 |
V244A |
possibly damaging |
Het |
| Ccdc187 |
C |
A |
2: 26,294,241 |
R48M |
probably null |
Het |
| Cnga2 |
G |
A |
X: 72,008,272 |
R251H |
probably damaging |
Het |
| Cop1 |
A |
C |
1: 159,306,709 |
K174Q |
probably damaging |
Het |
| Cul9 |
T |
C |
17: 46,538,987 |
D512G |
probably damaging |
Het |
| Flt4 |
G |
A |
11: 49,642,307 |
A1140T |
probably damaging |
Het |
| Galnt3 |
C |
T |
2: 66,093,610 |
R438H |
probably damaging |
Het |
| Gatm |
G |
A |
2: 122,609,700 |
A86V |
probably damaging |
Het |
| Klhl28 |
C |
T |
12: 64,951,566 |
A385T |
probably benign |
Het |
| Klhl40 |
T |
A |
9: 121,778,137 |
V121E |
probably damaging |
Het |
| L1cam |
T |
A |
X: 73,867,024 |
H30L |
probably benign |
Het |
| Lss |
A |
T |
10: 76,532,026 |
|
probably benign |
Het |
| Mrnip |
A |
T |
11: 50,199,769 |
Q253H |
probably damaging |
Het |
| Mroh9 |
A |
T |
1: 163,024,636 |
F828Y |
possibly damaging |
Het |
| Mst1 |
T |
C |
9: 108,084,813 |
C668R |
probably damaging |
Het |
| Nadk |
A |
G |
4: 155,586,796 |
E143G |
probably benign |
Het |
| Nap1l4 |
C |
T |
7: 143,527,165 |
|
probably null |
Het |
| Nme8 |
A |
G |
13: 19,652,244 |
I254T |
possibly damaging |
Het |
| Olfr1382 |
A |
G |
11: 49,535,194 |
Y3C |
probably benign |
Het |
| Olfr295 |
A |
G |
7: 86,585,571 |
I99V |
probably benign |
Het |
| Olfr374 |
T |
A |
8: 72,109,998 |
L144Q |
probably damaging |
Het |
| Pkd1l2 |
G |
A |
8: 117,065,745 |
T436I |
probably benign |
Het |
| Pkd1l3 |
C |
T |
8: 109,648,367 |
L1491F |
probably damaging |
Het |
| Plec |
G |
T |
15: 76,175,768 |
T3488N |
probably damaging |
Het |
| Plk2 |
T |
G |
13: 110,399,134 |
S497A |
probably benign |
Het |
| Polr1a |
G |
A |
6: 71,936,512 |
V617I |
probably benign |
Het |
| Prelid3a |
C |
A |
18: 67,476,839 |
Y112* |
probably null |
Het |
| Rnf113a2 |
C |
A |
12: 84,417,476 |
S47R |
possibly damaging |
Het |
| Ryr3 |
C |
T |
2: 112,800,047 |
A2140T |
probably damaging |
Het |
| Slc22a29 |
A |
G |
19: 8,169,990 |
L336P |
probably benign |
Het |
| Sphkap |
T |
A |
1: 83,257,242 |
Q1621L |
probably damaging |
Het |
| Svs1 |
A |
T |
6: 48,987,415 |
Y119F |
probably benign |
Het |
| Tcrg-C1 |
A |
T |
13: 19,215,902 |
K123* |
probably null |
Het |
| Ttn |
T |
A |
2: 76,909,519 |
S3559C |
probably benign |
Het |
| Ubr4 |
C |
T |
4: 139,480,676 |
R4923W |
probably damaging |
Het |
| Vac14 |
T |
C |
8: 110,710,452 |
L599P |
probably damaging |
Het |
| Wdr5 |
T |
C |
2: 27,519,734 |
|
probably benign |
Het |
|
| Other mutations in Rtel1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01420:Rtel1
|
APN |
2 |
181354401 |
missense |
probably benign |
0.16 |
|
IGL01957:Rtel1
|
APN |
2 |
181349313 |
unclassified |
probably benign |
|
|
IGL02247:Rtel1
|
APN |
2 |
181351341 |
nonsense |
probably null |
|
|
IGL02414:Rtel1
|
APN |
2 |
181335972 |
missense |
probably benign |
0.01 |
|
IGL02448:Rtel1
|
APN |
2 |
181336037 |
missense |
probably benign |
0.00 |
|
IGL03053:Rtel1
|
APN |
2 |
181351944 |
missense |
probably benign |
0.02 |
|
IGL03326:Rtel1
|
APN |
2 |
181355561 |
unclassified |
probably benign |
|
|
PIT4283001:Rtel1
|
UTSW |
2 |
181346890 |
missense |
probably benign |
0.00 |
|
R0047:Rtel1
|
UTSW |
2 |
181323405 |
missense |
probably damaging |
1.00 |
|
R0047:Rtel1
|
UTSW |
2 |
181323405 |
missense |
probably damaging |
1.00 |
|
R0051:Rtel1
|
UTSW |
2 |
181350656 |
nonsense |
probably null |
|
|
R0051:Rtel1
|
UTSW |
2 |
181350656 |
nonsense |
probably null |
|
|
R0147:Rtel1
|
UTSW |
2 |
181321046 |
missense |
probably damaging |
1.00 |
|
R0148:Rtel1
|
UTSW |
2 |
181321046 |
missense |
probably damaging |
1.00 |
|
R0316:Rtel1
|
UTSW |
2 |
181356002 |
missense |
possibly damaging |
0.87 |
|
R0628:Rtel1
|
UTSW |
2 |
181351881 |
missense |
probably benign |
0.03 |
|
R0940:Rtel1
|
UTSW |
2 |
181322803 |
missense |
probably benign |
0.36 |
|
R1165:Rtel1
|
UTSW |
2 |
181334939 |
missense |
probably benign |
0.26 |
|
R1213:Rtel1
|
UTSW |
2 |
181351335 |
missense |
probably benign |
0.01 |
|
R1291:Rtel1
|
UTSW |
2 |
181351043 |
missense |
probably damaging |
1.00 |
|
R1353:Rtel1
|
UTSW |
2 |
181349231 |
missense |
probably benign |
|
|
R1398:Rtel1
|
UTSW |
2 |
181335865 |
splice site |
probably null |
|
|
R1796:Rtel1
|
UTSW |
2 |
181352103 |
missense |
probably benign |
0.01 |
|
R1973:Rtel1
|
UTSW |
2 |
181351626 |
missense |
probably benign |
0.04 |
|
R2033:Rtel1
|
UTSW |
2 |
181351863 |
nonsense |
probably null |
|
|
R2144:Rtel1
|
UTSW |
2 |
181323706 |
missense |
probably damaging |
0.97 |
|
R2265:Rtel1
|
UTSW |
2 |
181354368 |
missense |
probably damaging |
1.00 |
|
R2269:Rtel1
|
UTSW |
2 |
181336003 |
missense |
probably benign |
0.00 |
|
R2416:Rtel1
|
UTSW |
2 |
181340531 |
missense |
possibly damaging |
0.66 |
|
R2865:Rtel1
|
UTSW |
2 |
181349972 |
missense |
probably benign |
0.36 |
|
R3508:Rtel1
|
UTSW |
2 |
181322409 |
missense |
probably benign |
0.32 |
|
R4242:Rtel1
|
UTSW |
2 |
181349934 |
missense |
probably damaging |
1.00 |
|
R4377:Rtel1
|
UTSW |
2 |
181355796 |
missense |
probably damaging |
1.00 |
|
R4702:Rtel1
|
UTSW |
2 |
181352169 |
missense |
probably benign |
0.30 |
|
R4706:Rtel1
|
UTSW |
2 |
181323746 |
critical splice donor site |
probably null |
|
|
R4817:Rtel1
|
UTSW |
2 |
181355935 |
missense |
possibly damaging |
0.82 |
|
R5020:Rtel1
|
UTSW |
2 |
181322514 |
splice site |
probably null |
|
|
R5069:Rtel1
|
UTSW |
2 |
181355492 |
missense |
probably benign |
0.03 |
|
R5222:Rtel1
|
UTSW |
2 |
181346983 |
intron |
probably benign |
|
|
R5268:Rtel1
|
UTSW |
2 |
181340561 |
missense |
probably benign |
0.03 |
|
R5291:Rtel1
|
UTSW |
2 |
181352095 |
missense |
possibly damaging |
0.47 |
|
R5588:Rtel1
|
UTSW |
2 |
181352100 |
missense |
probably benign |
|
|
R5682:Rtel1
|
UTSW |
2 |
181349972 |
missense |
probably benign |
0.19 |
|
R5796:Rtel1
|
UTSW |
2 |
181340506 |
missense |
probably benign |
0.26 |
|
R5931:Rtel1
|
UTSW |
2 |
181330815 |
nonsense |
probably null |
|
|
R6249:Rtel1
|
UTSW |
2 |
181351682 |
missense |
probably damaging |
1.00 |
|
R6465:Rtel1
|
UTSW |
2 |
181335940 |
missense |
possibly damaging |
0.68 |
|
R6616:Rtel1
|
UTSW |
2 |
181352786 |
missense |
possibly damaging |
0.68 |
|
R6800:Rtel1
|
UTSW |
2 |
181322463 |
missense |
probably benign |
0.31 |
|
R6835:Rtel1
|
UTSW |
2 |
181355953 |
missense |
probably benign |
0.04 |
|
R6917:Rtel1
|
UTSW |
2 |
181338277 |
makesense |
probably null |
|
|
R7264:Rtel1
|
UTSW |
2 |
181351861 |
missense |
not run |
|
|
R7381:Rtel1
|
UTSW |
2 |
181330815 |
nonsense |
probably null |
|
|
R7523:Rtel1
|
UTSW |
2 |
181322315 |
missense |
probably damaging |
1.00 |
|
R7587:Rtel1
|
UTSW |
2 |
181322315 |
missense |
probably damaging |
1.00 |
|
R7681:Rtel1
|
UTSW |
2 |
181322394 |
missense |
probably damaging |
0.99 |
|
R7871:Rtel1
|
UTSW |
2 |
181321029 |
missense |
probably damaging |
1.00 |
|
R7912:Rtel1
|
UTSW |
2 |
181356076 |
missense |
possibly damaging |
0.56 |
|
R8007:Rtel1
|
UTSW |
2 |
181334974 |
missense |
probably damaging |
1.00 |
|
R8062:Rtel1
|
UTSW |
2 |
181340567 |
missense |
probably benign |
0.17 |
|
R8088:Rtel1
|
UTSW |
2 |
181322345 |
missense |
probably damaging |
1.00 |
|
R8435:Rtel1
|
UTSW |
2 |
181354104 |
missense |
possibly damaging |
0.93 |
|
R8873:Rtel1
|
UTSW |
2 |
181356023 |
frame shift |
probably null |
|
|
R9441:Rtel1
|
UTSW |
2 |
181347067 |
missense |
possibly damaging |
0.89 |
|
R9704:Rtel1
|
UTSW |
2 |
181352112 |
nonsense |
probably null |
|
|
| Posted On |
2016-08-02 |
Incidental Mutation