Incidental Mutation 'IGL03142:Lyset'
ID 410727
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Lyset
Ensembl Gene ENSMUSG00000046675
Gene Name lysosomal enzyme trafficking factor
Synonyms D230037D09Rik, Tmem251
Accession Numbers
Essential gene? Probably non essential (E-score: 0.209) question?
Stock # IGL03142
Quality Score
Status
Chromosome 12
Chromosomal Location 102710021-102713820 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to A at 102710933 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Serine to Asparagine at position 52 (S52N)
Ref Sequence ENSEMBL: ENSMUSP00000054611 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000057416] [ENSMUST00000173760] [ENSMUST00000174651] [ENSMUST00000178384] [ENSMUST00000179306]
AlphaFold Q8BH26
Predicted Effect probably damaging
Transcript: ENSMUST00000057416
AA Change: S52N

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)
SMART Domains Protein: ENSMUSP00000054611
Gene: ENSMUSG00000046675
AA Change: S52N

DomainStartEndE-ValueType
Pfam:DUF4583 34 161 1.5e-72 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000173760
SMART Domains Protein: ENSMUSP00000133459
Gene: ENSMUSG00000096458

DomainStartEndE-ValueType
Pfam:PNMA 1 329 2e-137 PFAM
low complexity region 335 348 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000174651
SMART Domains Protein: ENSMUSP00000133604
Gene: ENSMUSG00000041716

DomainStartEndE-ValueType
Pfam:DUF4611 3 73 8.6e-29 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000178384
SMART Domains Protein: ENSMUSP00000137010
Gene: ENSMUSG00000096458

DomainStartEndE-ValueType
Pfam:PNMA 1 328 7.1e-127 PFAM
low complexity region 335 348 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000179306
SMART Domains Protein: ENSMUSP00000136193
Gene: ENSMUSG00000098530

DomainStartEndE-ValueType
Pfam:DUF4611 3 77 1.5e-28 PFAM
Coding Region Coverage
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 36 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Ccdc88c T C 12: 100,913,457 (GRCm39) S523G probably damaging Het
Ccnb1 A T 13: 100,920,039 (GRCm39) D157E probably damaging Het
Cep43 T A 17: 8,411,041 (GRCm39) S331R probably damaging Het
Cfap70 T C 14: 20,447,283 (GRCm39) T1055A probably damaging Het
Fn1 C A 1: 71,676,455 (GRCm39) R592L probably damaging Het
Frmpd4 T A X: 166,262,479 (GRCm39) D550V possibly damaging Het
Gcm2 A G 13: 41,256,711 (GRCm39) V346A probably benign Het
Gm10112 C T X: 110,209,673 (GRCm39) T4I probably damaging Het
Gm3115 T C 14: 4,084,302 (GRCm38) probably benign Het
Has2 A T 15: 56,545,491 (GRCm39) I37N possibly damaging Het
Hmgn3 A G 9: 83,028,482 (GRCm39) probably benign Het
Klhl29 T A 12: 5,187,603 (GRCm39) N254Y probably damaging Het
Kti12 A G 4: 108,705,362 (GRCm39) Y92C probably damaging Het
Mgat5 A C 1: 127,339,960 (GRCm39) Q447P probably damaging Het
Mlh3 C A 12: 85,297,075 (GRCm39) probably null Het
Mrpl45 T C 11: 97,206,751 (GRCm39) W18R probably benign Het
Mtor A G 4: 148,538,356 (GRCm39) D138G probably benign Het
Mycbp2 C T 14: 103,536,212 (GRCm39) C246Y probably damaging Het
Mylk4 A T 13: 32,904,582 (GRCm39) V415E probably damaging Het
Olfm3 A T 3: 114,890,679 (GRCm39) Q124L probably damaging Het
Or4d11 A T 19: 12,013,752 (GRCm39) M118K probably damaging Het
Pam C T 1: 97,822,111 (GRCm39) G298R probably damaging Het
Pappa2 A C 1: 158,682,501 (GRCm39) I849R probably damaging Het
Pde3a T A 6: 141,438,025 (GRCm39) D1031E probably benign Het
Pik3cb A T 9: 98,947,615 (GRCm39) S521T probably benign Het
Pkn1 A G 8: 84,397,652 (GRCm39) F824L possibly damaging Het
Pspn C T 17: 57,306,566 (GRCm39) R121Q probably benign Het
Ric1 A G 19: 29,578,380 (GRCm39) D1195G possibly damaging Het
Sin3b A G 8: 73,471,196 (GRCm39) D381G probably damaging Het
Slc37a3 T C 6: 39,336,919 (GRCm39) probably null Het
Smtn T A 11: 3,482,601 (GRCm39) K124* probably null Het
Tbce A G 13: 14,194,449 (GRCm39) V70A possibly damaging Het
Tti1 A G 2: 157,842,597 (GRCm39) Y811H probably damaging Het
Uggt2 T C 14: 119,235,603 (GRCm39) Y1424C probably damaging Het
Upf1 A G 8: 70,785,977 (GRCm39) V994A probably benign Het
Vmn2r121 T C X: 123,042,635 (GRCm39) D174G possibly damaging Het
Other mutations in Lyset
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01153:Lyset APN 12 102,711,135 (GRCm39) nonsense probably null
IGL02716:Lyset APN 12 102,711,088 (GRCm39) missense probably benign 0.00
R0415:Lyset UTSW 12 102,711,135 (GRCm39) nonsense probably null
R4860:Lyset UTSW 12 102,710,314 (GRCm39) intron probably benign
R4860:Lyset UTSW 12 102,710,314 (GRCm39) intron probably benign
R8520:Lyset UTSW 12 102,710,431 (GRCm39) splice site probably null
Posted On 2016-08-02