Incidental Mutation 'IGL03153:Irgm1'
ID |
411148 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Irgm1
|
Ensembl Gene |
ENSMUSG00000046879 |
Gene Name |
immunity-related GTPase family M member 1 |
Synonyms |
Iigp3, Irgm, Ifi1, LRG-47 |
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
IGL03153
|
Quality Score |
|
Status
|
|
Chromosome |
11 |
Chromosomal Location |
48756072-48762247 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to G
at 48757094 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Isoleucine to Threonine
at position 239
(I239T)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000094870
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000049519]
[ENSMUST00000097271]
|
AlphaFold |
Q60766 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000049519
AA Change: I255T
PolyPhen 2
Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
|
SMART Domains |
Protein: ENSMUSP00000050446 Gene: ENSMUSG00000046879 AA Change: I255T
Domain | Start | End | E-Value | Type |
Pfam:IIGP
|
42 |
399 |
5.5e-169 |
PFAM |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000097271
AA Change: I239T
PolyPhen 2
Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
|
SMART Domains |
Protein: ENSMUSP00000094870 Gene: ENSMUSG00000046879 AA Change: I239T
Domain | Start | End | E-Value | Type |
Pfam:IIGP
|
26 |
288 |
2.5e-131 |
PFAM |
Pfam:MMR_HSR1
|
62 |
175 |
2.8e-6 |
PFAM |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000147151
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
PHENOTYPE: In the absence of infection, mice show no overt phenotype. Resistance to protozoan parasitic infection and bacterial infection is impaired in homozygous mutant mice, whereas resistance to viral infection is normal. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 40 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
4933430I17Rik |
A |
G |
4: 62,465,563 (GRCm39) |
E419G |
possibly damaging |
Het |
Abcg3 |
A |
G |
5: 105,122,631 (GRCm39) |
|
probably benign |
Het |
Adam17 |
T |
C |
12: 21,395,698 (GRCm39) |
D256G |
probably damaging |
Het |
Adgrb3 |
G |
A |
1: 25,570,978 (GRCm39) |
R500* |
probably null |
Het |
Aldh3a2 |
A |
G |
11: 61,149,665 (GRCm39) |
Y234H |
probably damaging |
Het |
Alpk3 |
A |
G |
7: 80,743,143 (GRCm39) |
T987A |
probably benign |
Het |
Amtn |
A |
G |
5: 88,532,828 (GRCm39) |
K148E |
possibly damaging |
Het |
Asap1 |
G |
A |
15: 64,032,123 (GRCm39) |
T237M |
probably damaging |
Het |
Ccdc124 |
A |
T |
8: 71,321,573 (GRCm39) |
|
probably null |
Het |
Cdon |
T |
C |
9: 35,389,255 (GRCm39) |
Y787H |
probably damaging |
Het |
Cimip4 |
T |
C |
15: 78,269,516 (GRCm39) |
D188G |
probably damaging |
Het |
Coro7 |
A |
G |
16: 4,453,246 (GRCm39) |
|
probably null |
Het |
Dram2 |
T |
A |
3: 106,462,490 (GRCm39) |
|
probably benign |
Het |
Drd5 |
T |
C |
5: 38,477,124 (GRCm39) |
V39A |
probably benign |
Het |
Ern1 |
A |
G |
11: 106,300,924 (GRCm39) |
L490P |
possibly damaging |
Het |
Fat1 |
A |
G |
8: 45,483,160 (GRCm39) |
T3083A |
possibly damaging |
Het |
Klhl10 |
A |
T |
11: 100,347,758 (GRCm39) |
T605S |
probably benign |
Het |
Lcor |
T |
A |
19: 41,546,795 (GRCm39) |
S126R |
probably damaging |
Het |
Lgi4 |
G |
T |
7: 30,759,983 (GRCm39) |
V60F |
probably damaging |
Het |
Lin37 |
G |
A |
7: 30,256,585 (GRCm39) |
R84W |
probably damaging |
Het |
Lmf1 |
A |
G |
17: 25,804,624 (GRCm39) |
S97G |
possibly damaging |
Het |
Oasl2 |
A |
G |
5: 115,039,393 (GRCm39) |
T194A |
probably benign |
Het |
Or5ac17 |
A |
G |
16: 59,036,566 (GRCm39) |
S137P |
probably benign |
Het |
Pnpo |
A |
T |
11: 96,834,661 (GRCm39) |
F12I |
probably damaging |
Het |
Prdm4 |
T |
C |
10: 85,743,860 (GRCm39) |
T132A |
probably benign |
Het |
Ptbp2 |
T |
C |
3: 119,545,593 (GRCm39) |
T118A |
probably benign |
Het |
Ptf1a |
T |
A |
2: 19,451,456 (GRCm39) |
|
probably benign |
Het |
Rev3l |
T |
A |
10: 39,682,874 (GRCm39) |
F331I |
probably damaging |
Het |
Rfx6 |
C |
A |
10: 51,599,217 (GRCm39) |
S524* |
probably null |
Het |
Scube3 |
A |
G |
17: 28,386,032 (GRCm39) |
S758G |
possibly damaging |
Het |
Slc44a2 |
T |
C |
9: 21,254,496 (GRCm39) |
I257T |
probably benign |
Het |
Spon1 |
A |
T |
7: 113,629,579 (GRCm39) |
I408F |
probably damaging |
Het |
Srpk1 |
C |
A |
17: 28,811,240 (GRCm39) |
D541Y |
possibly damaging |
Het |
Tenm4 |
A |
T |
7: 96,522,969 (GRCm39) |
I1467F |
probably damaging |
Het |
Uggt1 |
A |
C |
1: 36,241,899 (GRCm39) |
V345G |
possibly damaging |
Het |
Vmn1r23 |
A |
T |
6: 57,902,917 (GRCm39) |
I287K |
probably damaging |
Het |
Whamm |
A |
G |
7: 81,239,280 (GRCm39) |
|
probably benign |
Het |
Zeb1 |
A |
G |
18: 5,770,511 (GRCm39) |
D888G |
probably damaging |
Het |
Zfp263 |
A |
G |
16: 3,564,744 (GRCm39) |
N253S |
possibly damaging |
Het |
Zfp446 |
C |
A |
7: 12,711,834 (GRCm39) |
A19E |
probably benign |
Het |
|
Other mutations in Irgm1 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00418:Irgm1
|
APN |
11 |
48,756,832 (GRCm39) |
nonsense |
probably null |
|
IGL01821:Irgm1
|
APN |
11 |
48,757,353 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02043:Irgm1
|
APN |
11 |
48,757,642 (GRCm39) |
missense |
probably damaging |
0.98 |
IGL02252:Irgm1
|
APN |
11 |
48,756,981 (GRCm39) |
missense |
possibly damaging |
0.92 |
igraine
|
UTSW |
11 |
48,757,440 (GRCm39) |
missense |
probably benign |
0.33 |
R0487:Irgm1
|
UTSW |
11 |
48,757,154 (GRCm39) |
missense |
probably damaging |
0.98 |
R1808:Irgm1
|
UTSW |
11 |
48,757,259 (GRCm39) |
missense |
probably damaging |
0.99 |
R1809:Irgm1
|
UTSW |
11 |
48,757,440 (GRCm39) |
missense |
probably benign |
0.33 |
R1878:Irgm1
|
UTSW |
11 |
48,756,897 (GRCm39) |
missense |
probably benign |
0.07 |
R2971:Irgm1
|
UTSW |
11 |
48,757,417 (GRCm39) |
nonsense |
probably null |
|
R4492:Irgm1
|
UTSW |
11 |
48,756,955 (GRCm39) |
synonymous |
silent |
|
R4962:Irgm1
|
UTSW |
11 |
48,757,159 (GRCm39) |
missense |
possibly damaging |
0.93 |
R5186:Irgm1
|
UTSW |
11 |
48,757,044 (GRCm39) |
missense |
probably benign |
0.00 |
R5794:Irgm1
|
UTSW |
11 |
48,757,064 (GRCm39) |
missense |
probably damaging |
0.99 |
R6224:Irgm1
|
UTSW |
11 |
48,757,713 (GRCm39) |
missense |
probably benign |
0.02 |
R6487:Irgm1
|
UTSW |
11 |
48,756,777 (GRCm39) |
missense |
probably benign |
0.21 |
R6752:Irgm1
|
UTSW |
11 |
48,757,290 (GRCm39) |
missense |
probably damaging |
1.00 |
R6766:Irgm1
|
UTSW |
11 |
48,756,928 (GRCm39) |
missense |
possibly damaging |
0.80 |
R8005:Irgm1
|
UTSW |
11 |
48,757,217 (GRCm39) |
missense |
probably damaging |
1.00 |
R8418:Irgm1
|
UTSW |
11 |
48,757,166 (GRCm39) |
missense |
probably damaging |
0.97 |
R8924:Irgm1
|
UTSW |
11 |
48,756,698 (GRCm39) |
missense |
probably benign |
0.35 |
R8947:Irgm1
|
UTSW |
11 |
48,759,575 (GRCm39) |
intron |
probably benign |
|
|
Posted On |
2016-08-02 |