Incidental Mutation 'IGL03191:Lrrc32'
ID412652
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Lrrc32
Ensembl Gene ENSMUSG00000090958
Gene Nameleucine rich repeat containing 32
SynonymsD7H11S833E, EG434215, Garp, D11S833Eh
Accession Numbers
Is this an essential gene? Possibly non essential (E-score: 0.310) question?
Stock #IGL03191
Quality Score
Status
Chromosome7
Chromosomal Location98489283-98502181 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) A to G at 98498247 bp
ZygosityHeterozygous
Amino Acid Change Histidine to Arginine at position 78 (H78R)
Ref Sequence ENSEMBL: ENSMUSP00000146299 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000165205] [ENSMUST00000205937] [ENSMUST00000205956]
Predicted Effect probably benign
Transcript: ENSMUST00000165205
AA Change: H78R

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)
SMART Domains Protein: ENSMUSP00000133205
Gene: ENSMUSG00000090958
AA Change: H78R

DomainStartEndE-ValueType
signal peptide 1 17 N/A INTRINSIC
Blast:LRRNT 22 54 3e-12 BLAST
LRR_TYP 73 96 9.44e-2 SMART
LRR 97 123 1.86e2 SMART
LRR 124 148 3.01e2 SMART
LRR 149 172 5.41e0 SMART
LRR 173 196 1.51e0 SMART
LRR_TYP 197 220 7.67e-2 SMART
LRR 265 287 1.49e2 SMART
LRR 315 338 4.97e0 SMART
LRR 339 362 8.01e0 SMART
LRR 363 384 5.57e1 SMART
LRR_TYP 386 409 3.44e-4 SMART
low complexity region 425 437 N/A INTRINSIC
LRR 443 466 2.33e2 SMART
LRR 514 536 2.03e1 SMART
LRR 537 559 2.61e1 SMART
Blast:LRR 561 588 6e-11 BLAST
transmembrane domain 630 652 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000205937
AA Change: H78R

PolyPhen 2 Score 0.663 (Sensitivity: 0.86; Specificity: 0.91)
Predicted Effect probably benign
Transcript: ENSMUST00000205956
AA Change: H78R

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a type I membrane protein which contains 20 leucine-rich repeats. Alterations in the chromosomal region 11q13-11q14 are involved in several pathologies. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a conditional allele activated in T cells exhibit reduced regulatory T cell ability to drive Th17 differentiation. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 28 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aox2 A G 1: 58,359,069 D1323G probably null Het
Asxl2 A G 12: 3,500,094 D612G probably damaging Het
Cacna1c A T 6: 118,741,903 F395L probably damaging Het
Cct8 A G 16: 87,486,310 S380P probably damaging Het
Cltb T C 13: 54,599,070 E31G probably damaging Het
Cobl T C 11: 12,253,364 M1031V probably benign Het
Colgalt1 C A 8: 71,623,087 probably null Het
Dcstamp A G 15: 39,754,224 I10V probably benign Het
Diaph3 T C 14: 87,073,302 I138V possibly damaging Het
Dnah8 T C 17: 30,726,830 V1827A probably damaging Het
Dpf1 T A 7: 29,316,561 probably benign Het
Dscam A T 16: 96,820,769 L494Q probably benign Het
Eif2ak4 C T 2: 118,422,212 H422Y probably damaging Het
Galnt10 T C 11: 57,771,500 V324A probably damaging Het
Gm17689 T C 9: 36,581,402 D69G probably benign Het
Hcfc1 T C X: 73,955,614 I309V probably benign Het
Il24 T C 1: 130,884,847 T96A probably benign Het
Itga2 T C 13: 114,836,484 probably benign Het
Lrrk1 T C 7: 66,259,959 E2001G probably damaging Het
Lztr1 T A 16: 17,518,528 M199K probably damaging Het
Mcm8 A G 2: 132,821,442 Y160C possibly damaging Het
Msh4 G A 3: 153,869,608 T710M probably damaging Het
Pilrb1 A T 5: 137,854,965 L192Q probably damaging Het
Pim1 T A 17: 29,493,719 probably benign Het
Slc12a1 A T 2: 125,206,089 Q817L possibly damaging Het
Trip11 T C 12: 101,898,925 D163G probably damaging Het
Tsc2 A T 17: 24,628,054 V179E probably damaging Het
Zfp641 C T 15: 98,288,687 V352M probably damaging Het
Other mutations in Lrrc32
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01447:Lrrc32 APN 7 98498376 missense probably damaging 1.00
IGL01484:Lrrc32 APN 7 98494235 missense probably damaging 0.99
IGL01608:Lrrc32 APN 7 98499357 missense probably benign 0.01
IGL02025:Lrrc32 APN 7 98499560 missense probably benign 0.00
IGL02026:Lrrc32 APN 7 98499560 missense probably benign 0.00
IGL03061:Lrrc32 APN 7 98499422 missense probably benign 0.04
R0706:Lrrc32 UTSW 7 98499710 missense probably damaging 1.00
R0947:Lrrc32 UTSW 7 98498883 missense probably benign
R1470:Lrrc32 UTSW 7 98499357 missense probably benign
R1470:Lrrc32 UTSW 7 98499357 missense probably benign
R2879:Lrrc32 UTSW 7 98499777 missense probably benign 0.02
R3608:Lrrc32 UTSW 7 98499186 missense probably benign 0.09
R4417:Lrrc32 UTSW 7 98498937 missense probably benign 0.01
R4798:Lrrc32 UTSW 7 98499017 missense probably damaging 1.00
R4872:Lrrc32 UTSW 7 98498520 missense probably damaging 0.99
R5813:Lrrc32 UTSW 7 98498411 missense probably damaging 1.00
R6062:Lrrc32 UTSW 7 98498541 missense probably benign 0.00
R6742:Lrrc32 UTSW 7 98498832 missense probably benign 0.00
R6930:Lrrc32 UTSW 7 98499264 missense possibly damaging 0.89
R7265:Lrrc32 UTSW 7 98499437 missense probably damaging 1.00
R7367:Lrrc32 UTSW 7 98498879 nonsense probably null
R7372:Lrrc32 UTSW 7 98499807 missense probably benign 0.28
R7414:Lrrc32 UTSW 7 98499994 missense probably benign 0.01
R7485:Lrrc32 UTSW 7 98498207 missense possibly damaging 0.94
R7679:Lrrc32 UTSW 7 98499687 missense possibly damaging 0.91
R7713:Lrrc32 UTSW 7 98499338 missense probably damaging 0.99
Z1088:Lrrc32 UTSW 7 98499060 missense probably benign 0.03
Posted On2016-08-02