Incidental Mutation 'IGL03230:Bms1'
ID413870
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Bms1
Ensembl Gene ENSMUSG00000030138
Gene NameBMS1, ribosome biogenesis factor
SynonymsBms1l
Accession Numbers
Is this an essential gene? Essential (E-score: 1.000) question?
Stock #IGL03230
Quality Score
Status
Chromosome6
Chromosomal Location118383381-118419474 bp(-) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) T to A at 118418561 bp
ZygosityHeterozygous
Amino Acid Change Lysine to Asparagine at position 8 (K8N)
Ref Sequence ENSEMBL: ENSMUSP00000032237 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000032237]
Predicted Effect possibly damaging
Transcript: ENSMUST00000032237
AA Change: K8N

PolyPhen 2 Score 0.876 (Sensitivity: 0.83; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000032237
Gene: ENSMUSG00000030138
AA Change: K8N

DomainStartEndE-ValueType
SCOP:d1f5na2 78 187 2e-5 SMART
low complexity region 190 205 N/A INTRINSIC
AARP2CN 231 317 2.15e-42 SMART
low complexity region 436 460 N/A INTRINSIC
low complexity region 462 481 N/A INTRINSIC
low complexity region 498 514 N/A INTRINSIC
low complexity region 518 537 N/A INTRINSIC
low complexity region 590 613 N/A INTRINSIC
low complexity region 642 661 N/A INTRINSIC
Blast:AAA 663 740 9e-20 BLAST
DUF663 816 1108 6.7e-173 SMART
coiled coil region 1223 1257 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000203444
Predicted Effect noncoding transcript
Transcript: ENSMUST00000205207
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene likely encodes a ribosome assembly protein. A similar protein in yeast functions in 35S-rRNA processing, which includes a series of cleavage steps critical for formation of 40S ribosomes. Related pseudogenes exist on chromosomes 2, 9, 10, 15, 16, and 22.[provided by RefSeq, Mar 2009]
Allele List at MGI
Other mutations in this stock
Total: 48 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca13 C A 11: 9,294,313 Q2059K probably benign Het
Abcc1 A T 16: 14,457,947 T902S probably benign Het
Acly A T 11: 100,494,059 C623S probably damaging Het
Ak8 A G 2: 28,709,923 probably benign Het
Birc6 A G 17: 74,611,070 D1811G probably damaging Het
Cdc25b T C 2: 131,188,140 F79L probably benign Het
Cdh13 T A 8: 119,242,317 V471D probably damaging Het
Cnot4 T C 6: 35,051,409 D424G probably damaging Het
Cyp2a12 A T 7: 27,029,592 I70F possibly damaging Het
Cyp2c66 A T 19: 39,183,858 R406W possibly damaging Het
Cyp2g1 C A 7: 26,819,403 P408Q probably damaging Het
Defa26 A G 8: 21,618,298 D39G probably damaging Het
Dnah1 A T 14: 31,270,066 S3020T probably damaging Het
Dst A T 1: 34,184,052 K1119* probably null Het
Gm10110 A C 14: 89,898,297 noncoding transcript Het
Grk2 C T 19: 4,287,829 E508K probably benign Het
Hpx A T 7: 105,599,312 I94N probably benign Het
Il23r C T 6: 67,423,964 A461T probably benign Het
Iqca A G 1: 90,145,002 I52T probably damaging Het
Kif21b T A 1: 136,162,812 M1146K probably benign Het
Kifap3 C A 1: 163,825,724 T293K probably benign Het
Luzp1 G A 4: 136,542,878 S804N probably benign Het
Mcmdc2 C T 1: 9,931,996 probably benign Het
Mctp1 G T 13: 76,824,857 A403S possibly damaging Het
Mtnr1a T C 8: 45,087,398 I132T probably damaging Het
Musk T A 4: 58,296,710 N103K probably damaging Het
Nipal2 T A 15: 34,575,556 D352V probably damaging Het
Oas1a T A 5: 120,898,356 K336I probably benign Het
Oasl1 T C 5: 114,937,056 S392P probably damaging Het
Olfr1031 A T 2: 85,992,239 T141S probably benign Het
Olfr1222 A G 2: 89,125,548 F61S probably damaging Het
Olfr1225 A T 2: 89,171,089 M41K possibly damaging Het
Olfr402 A G 11: 74,155,273 T40A probably benign Het
Olfr48 T C 2: 89,844,113 T287A probably benign Het
Olfr699 A G 7: 106,790,704 L99P probably damaging Het
Pate3 T G 9: 35,646,106 T85P probably benign Het
Piezo2 T C 18: 63,041,720 N1988D probably damaging Het
Plcxd3 T A 15: 4,516,790 I92N probably damaging Het
Ptprd T A 4: 76,050,417 R213* probably null Het
Slit1 T C 19: 41,729,085 D80G probably damaging Het
Sorcs1 A G 19: 50,242,093 V472A probably damaging Het
Trp63 T A 16: 25,889,010 D485E probably damaging Het
Tsr1 T C 11: 74,900,471 V292A probably benign Het
Ttc37 T A 13: 76,155,647 probably benign Het
Ush2a G T 1: 188,466,193 A1485S probably benign Het
Vmn1r49 T A 6: 90,072,668 R117S probably damaging Het
Vmn2r97 C A 17: 18,929,406 P352H probably benign Het
Zxdc C T 6: 90,373,803 T412I probably damaging Het
Other mutations in Bms1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00090:Bms1 APN 6 118404583 missense probably benign 0.01
IGL00763:Bms1 APN 6 118418402 splice site probably benign
IGL00839:Bms1 APN 6 118405291 missense probably benign 0.30
IGL02005:Bms1 APN 6 118404585 missense probably damaging 1.00
IGL02271:Bms1 APN 6 118389329 missense probably benign 0.10
IGL02403:Bms1 APN 6 118405224 missense possibly damaging 0.89
IGL02474:Bms1 APN 6 118416519 missense probably benign 0.00
IGL03277:Bms1 APN 6 118405122 missense probably benign
PIT4508001:Bms1 UTSW 6 118383806 missense probably benign 0.03
R0028:Bms1 UTSW 6 118416519 missense probably benign 0.00
R0056:Bms1 UTSW 6 118405229 missense probably benign 0.00
R0056:Bms1 UTSW 6 118405229 missense probably benign 0.00
R0276:Bms1 UTSW 6 118408134 missense possibly damaging 0.87
R0295:Bms1 UTSW 6 118389337 missense probably benign 0.04
R0360:Bms1 UTSW 6 118405290 missense probably benign 0.13
R0556:Bms1 UTSW 6 118413179 missense probably damaging 1.00
R1078:Bms1 UTSW 6 118405221 missense probably benign 0.00
R1583:Bms1 UTSW 6 118389389 splice site probably benign
R1815:Bms1 UTSW 6 118383781 missense probably damaging 1.00
R1957:Bms1 UTSW 6 118392978 missense probably damaging 0.98
R2045:Bms1 UTSW 6 118392627 missense probably damaging 1.00
R2511:Bms1 UTSW 6 118391153 splice site probably null
R4293:Bms1 UTSW 6 118405347 splice site probably null
R4296:Bms1 UTSW 6 118404999 missense probably damaging 0.96
R4467:Bms1 UTSW 6 118383847 missense probably damaging 0.99
R4688:Bms1 UTSW 6 118392706 missense probably damaging 1.00
R4718:Bms1 UTSW 6 118403235 missense possibly damaging 0.91
R5015:Bms1 UTSW 6 118404263 nonsense probably null
R5327:Bms1 UTSW 6 118405218 missense possibly damaging 0.53
R5489:Bms1 UTSW 6 118413745 missense possibly damaging 0.64
R5511:Bms1 UTSW 6 118388887 missense possibly damaging 0.85
R5636:Bms1 UTSW 6 118388825 missense probably benign 0.00
R5815:Bms1 UTSW 6 118404279 missense probably damaging 1.00
R6245:Bms1 UTSW 6 118396836 missense probably damaging 0.96
R6299:Bms1 UTSW 6 118418515 missense probably damaging 0.98
R6389:Bms1 UTSW 6 118403235 missense possibly damaging 0.91
R6838:Bms1 UTSW 6 118416494 missense probably benign 0.00
R7129:Bms1 UTSW 6 118403161 nonsense probably null
R7414:Bms1 UTSW 6 118383745 missense possibly damaging 0.93
R7811:Bms1 UTSW 6 118403138 missense probably damaging 0.99
R7883:Bms1 UTSW 6 118388774 missense probably benign 0.04
R8046:Bms1 UTSW 6 118408144 missense probably benign
R8068:Bms1 UTSW 6 118413750 missense probably damaging 1.00
R8098:Bms1 UTSW 6 118384258 missense probably damaging 0.98
R8176:Bms1 UTSW 6 118418450 missense probably damaging 1.00
X0067:Bms1 UTSW 6 118404834 missense probably benign 0.26
Posted On2016-08-02