Mutagenetix > Incidental Mutation

Incidental Mutation 'R0463:Magel2'

41482

Institutional Source

Beutler Lab

Gene Symbol

Magel2

Ensembl Gene

ENSMUSG00000056972

Gene Name

melanoma antigen, family L, 2

Synonyms

nM15, ns7, NDNL1, Mage-l2

MMRRC Submission

038663-MU

Accession Numbers

Is this an essential gene?

Essential (E-score: 1.000) question?

Stock #

R0463 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

62377010-62381640 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 62378030 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Glutamine at position 227 (H227Q)

Ref Sequence

ENSEMBL: ENSMUSP00000079265 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000080403]

AlphaFold

Q9QZ04

Predicted Effect

possibly damaging
Transcript: ENSMUST00000080403
AA Change: H227Q

PolyPhen 2 Score 0.533 (Sensitivity: 0.88; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000079265
Gene: ENSMUSG00000056972
AA Change: H227Q

Domain	Start	End	E-Value	Type
low complexity region	30	49	N/A	INTRINSIC
low complexity region	51	84	N/A	INTRINSIC
internal_repeat_1	85	131	2.45e-10	PROSPERO
low complexity region	134	205	N/A	INTRINSIC
internal_repeat_1	222	298	2.45e-10	PROSPERO
internal_repeat_2	289	332	6.32e-5	PROSPERO
low complexity region	347	363	N/A	INTRINSIC
low complexity region	467	492	N/A	INTRINSIC
internal_repeat_2	494	535	6.32e-5	PROSPERO
low complexity region	560	648	N/A	INTRINSIC
low complexity region	675	686	N/A	INTRINSIC
low complexity region	761	785	N/A	INTRINSIC
low complexity region	903	920	N/A	INTRINSIC
MAGE	1059	1229	6.82e-65	SMART
low complexity region	1262	1284	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000207232

Coding Region Coverage

1x: 99.2%
3x: 98.4%
10x: 96.5%
20x: 93.5%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Prader-Willi syndrome (PWS) is caused by the loss of expression of imprinted genes in chromosome 15q11-q13 region. Affected individuals exhibit neonatal hypotonia, developmental delay, and childhood-onset obesity. Necdin (NDN), a gene involved in the terminal differentiation of neurons, localizes to this region of the genome and has been implicated as one of the genes responsible for the etiology of PWS. This gene is structurally similar to NDN, is also localized to the PWS chromosomal region, and is paternally imprinted, suggesting a possible role for it in PWS. [provided by RefSeq, Oct 2010]
PHENOTYPE: Mice heterozygous for a null allele that is inherited paternally exhibit some postnatal lethality, reduced male fertility, abnormal circadian rhythm, and hypoactivity. Mice heterozygous for another paternal knock-out allele exhibit 50% neonatal lethalityassociated with weak suckling activity. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 92 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930522L14Rik	A	G	5: 109,737,060		probably benign	Het
Abcd2	C	T	15: 91,159,124	M620I	probably benign	Het
Ada	T	A	2: 163,730,351	I243F	probably benign	Het
Adam12	T	C	7: 133,974,416		probably null	Het
Adarb2	A	T	13: 8,203,188		probably benign	Het
Adk	A	C	14: 21,423,536	Q287P	probably benign	Het
Ahnak	A	G	19: 9,009,407		probably benign	Het
Aoc3	C	T	11: 101,331,606	R223W	probably damaging	Het
Aqp11	T	C	7: 97,729,021	D229G	probably benign	Het
Arhgap28	A	G	17: 67,896,225	S78P	probably damaging	Het
Bfsp2	T	A	9: 103,426,655	E383D	possibly damaging	Het
Bmpr1b	A	T	3: 141,857,430	V251D	possibly damaging	Het
Calhm1	C	T	19: 47,143,841	V112I	probably benign	Het
Catsperd	A	G	17: 56,659,554	D508G	probably damaging	Het
Cfap54	A	G	10: 92,874,943		probably null	Het
Cfap70	A	T	14: 20,448,563	Y19N	probably damaging	Het
Chga	A	T	12: 102,562,951	R396*	probably null	Het
Cntnap3	T	C	13: 64,778,876	E560G	probably damaging	Het
Csmd1	T	C	8: 15,921,759	T3024A	probably damaging	Het
Csrnp1	CCCTCCTCCTCCTCCTCCTC	CCCTCCTCCTCCTCCTC	9: 119,972,775		probably benign	Het
Cysltr1	A	G	X: 106,578,655	V75A	possibly damaging	Het
Dnah2	A	T	11: 69,423,126	M4140K	probably damaging	Het
Dph5	A	G	3: 115,928,703	S277G	probably benign	Het
Eftud2	A	T	11: 102,864,771	D203E	probably damaging	Het
Egf	A	G	3: 129,737,549	S126P	probably damaging	Het
Egf	A	G	3: 129,706,233	Y252H	probably benign	Het
Faf1	C	T	4: 109,890,941	A481V	probably benign	Het
Fat2	A	T	11: 55,262,829	V3519D	probably damaging	Het
Fbln7	C	A	2: 128,877,511	A76E	probably benign	Het
Galnt1	A	T	18: 24,254,525	K49N	probably benign	Het
Glb1	ACCC	ACC	9: 114,421,744		probably null	Het
Grk1	T	C	8: 13,409,279	Y277H	probably damaging	Het
Hap1	A	G	11: 100,349,305	L555P	probably damaging	Het
Ier3	T	C	17: 35,822,108	I94T	possibly damaging	Het
Il11	T	C	7: 4,776,024	T36A	probably damaging	Het
Il5ra	A	T	6: 106,731,890	D296E	probably damaging	Het
Itk	A	T	11: 46,331,989	V551E	probably damaging	Het
Kcna2	T	A	3: 107,105,160	D352E	probably benign	Het
Kif5a	A	T	10: 127,235,652	S776T	probably benign	Het
Klrb1c	T	C	6: 128,780,403	E233G	probably benign	Het
Kpna7	T	C	5: 145,007,994	K12R	possibly damaging	Het
Lhpp	C	T	7: 132,610,677		probably benign	Het
Lhx8	A	T	3: 154,328,171		probably null	Het
Lrrc6	T	A	15: 66,380,474	M448L	probably benign	Het
Man1a	A	G	10: 54,074,498	V176A	probably damaging	Het
Mapkbp1	T	A	2: 120,023,151	M1152K	probably benign	Het
Mcoln3	T	A	3: 146,140,576	L547*	probably null	Het
Myof	T	C	19: 37,916,504	D1624G	probably damaging	Het
Myom2	T	C	8: 15,104,123	V687A	probably benign	Het
Nav1	C	A	1: 135,452,207	V1586F	possibly damaging	Het
Ndufb8	T	C	19: 44,550,345	E179G	possibly damaging	Het
Nfam1	T	C	15: 83,001,483	T223A	probably damaging	Het
Nrcam	T	A	12: 44,551,341	V371E	probably damaging	Het
Nup210l	A	G	3: 90,180,211	Q1097R	probably null	Het
Obox5	T	A	7: 15,757,646	M37K	probably damaging	Het
Obscn	A	T	11: 59,061,530	N4270K	probably benign	Het
Olfr1008	T	C	2: 85,689,839	S137P	possibly damaging	Het
Olfr463	G	A	11: 87,893,196	H243Y	probably damaging	Het
Olfr802	A	G	10: 129,681,839	M300T	probably benign	Het
Olfr893	G	A	9: 38,209,064	A2T	probably benign	Het
Olfr995	T	A	2: 85,438,286	S291C	probably damaging	Het
Patj	G	A	4: 98,674,308	E1505K	probably damaging	Het
Pnliprp1	T	A	19: 58,738,196	Y328*	probably null	Het
Ppp1r36	G	A	12: 76,418,967	E43K	probably damaging	Het
Ptch1	C	T	13: 63,520,307	V939I	probably damaging	Het
Rgs22	C	A	15: 36,092,938	K396N	probably damaging	Het
Rsrc1	A	T	3: 67,180,861	H176L	probably damaging	Het
Ryr3	A	T	2: 112,661,701	F3743L	probably damaging	Het
Scn7a	C	T	2: 66,675,740	G1602R	probably benign	Het
Sftpc	A	T	14: 70,522,670	V49E	probably damaging	Het
Slc16a10	A	G	10: 40,040,616	V430A	probably benign	Het
Slco4c1	A	C	1: 96,867,920	S138A	possibly damaging	Het
Snd1	T	C	6: 28,724,956	I501T	probably benign	Het
Stxbp2	T	A	8: 3,632,559	D49E	probably damaging	Het
Sytl4	A	T	X: 133,962,187	D16E	probably benign	Het
Tbc1d9b	G	A	11: 50,145,067	G130E	probably benign	Het
Tdrd6	T	A	17: 43,625,561	D1532V	probably damaging	Het
Tekt1	T	C	11: 72,351,952	D243G	probably damaging	Het
Tet2	A	G	3: 133,486,666	L669S	possibly damaging	Het
Tnnt3	A	G	7: 142,512,335	N201S	probably benign	Het
Trdn	A	G	10: 33,466,421		probably null	Het
Trim36	T	C	18: 46,178,456	E259G	possibly damaging	Het
Trpm1	C	T	7: 64,220,254	P436S	probably benign	Het
Vmn1r183	T	A	7: 24,055,501	L243Q	probably damaging	Het
Vps13b	T	C	15: 35,597,409	S1032P	probably damaging	Het
Vps37d	T	C	5: 135,076,541	E76G	probably damaging	Het
Vps72	A	G	3: 95,121,304	H202R	probably benign	Het
Wdr75	T	C	1: 45,819,602	S644P	probably damaging	Het
Wrn	T	A	8: 33,280,815	E697V	possibly damaging	Het
Xirp2	A	G	2: 67,514,918	D2501G	probably benign	Het
Zfp472	T	C	17: 32,975,962	W24R	probably damaging	Het
Zmym6	T	C	4: 127,122,772	V782A	probably damaging	Het

Other mutations in Magel2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00948:Magel2	APN	7	62379322	missense	unknown
IGL01391:Magel2	APN	7	62380884	missense	unknown
IGL01876:Magel2	APN	7	62378827	missense	possibly damaging	0.68
IGL02613:Magel2	APN	7	62380198	missense	unknown
IGL02617:Magel2	APN	7	62380198	missense	unknown
IGL03256:Magel2	APN	7	62380414	missense	unknown
IGL03382:Magel2	APN	7	62378713	missense	probably benign	0.00
astroclast2	UTSW	7	62380159	missense	unknown
IGL02837:Magel2	UTSW	7	62378260	missense	possibly damaging	0.93
R0398:Magel2	UTSW	7	62380551	nonsense	probably null
R1033:Magel2	UTSW	7	62380050	missense	unknown
R1271:Magel2	UTSW	7	62381014	missense	unknown
R1518:Magel2	UTSW	7	62380440	missense	unknown
R1539:Magel2	UTSW	7	62378809	missense	possibly damaging	0.91
R1682:Magel2	UTSW	7	62380235	missense	unknown
R1686:Magel2	UTSW	7	62378240	missense	possibly damaging	0.53
R1782:Magel2	UTSW	7	62380857	nonsense	probably null
R1785:Magel2	UTSW	7	62377738	missense	unknown
R1786:Magel2	UTSW	7	62377738	missense	unknown
R1950:Magel2	UTSW	7	62378415	missense	possibly damaging	0.48
R2001:Magel2	UTSW	7	62379096	missense	unknown
R2002:Magel2	UTSW	7	62379096	missense	unknown
R2018:Magel2	UTSW	7	62379096	missense	unknown
R2019:Magel2	UTSW	7	62379096	missense	unknown
R2029:Magel2	UTSW	7	62380594	missense	unknown
R2070:Magel2	UTSW	7	62379096	missense	unknown
R2131:Magel2	UTSW	7	62377738	missense	unknown
R2132:Magel2	UTSW	7	62377738	missense	unknown
R2133:Magel2	UTSW	7	62377738	missense	unknown
R2134:Magel2	UTSW	7	62379096	missense	unknown
R2155:Magel2	UTSW	7	62380792	missense	unknown
R4294:Magel2	UTSW	7	62378767	missense	possibly damaging	0.86
R4591:Magel2	UTSW	7	62381089	missense	unknown
R4621:Magel2	UTSW	7	62377738	missense	unknown
R4816:Magel2	UTSW	7	62381092	missense	unknown
R4931:Magel2	UTSW	7	62380624	missense	unknown
R5031:Magel2	UTSW	7	62380104	missense	unknown
R5034:Magel2	UTSW	7	62379868	missense	unknown
R5042:Magel2	UTSW	7	62379606	missense	unknown
R5600:Magel2	UTSW	7	62379766	missense	unknown
R5769:Magel2	UTSW	7	62378113	missense	probably benign	0.02
R5980:Magel2	UTSW	7	62380596	missense	unknown
R5987:Magel2	UTSW	7	62378767	missense	probably benign	0.33
R6187:Magel2	UTSW	7	62377641	missense	unknown
R6267:Magel2	UTSW	7	62378679	missense	probably damaging	0.98
R6270:Magel2	UTSW	7	62380658	nonsense	probably null
R6316:Magel2	UTSW	7	62378719	missense	possibly damaging	0.68
R6444:Magel2	UTSW	7	62379999	missense	unknown
R6452:Magel2	UTSW	7	62380384	missense	unknown
R6797:Magel2	UTSW	7	62380159	missense	unknown
R6917:Magel2	UTSW	7	62377844	small deletion	probably benign
R7011:Magel2	UTSW	7	62378533	missense	possibly damaging	0.92
R7025:Magel2	UTSW	7	62379787	missense	unknown
R7335:Magel2	UTSW	7	62380776	missense	unknown
R7353:Magel2	UTSW	7	62379331	missense	unknown
R7413:Magel2	UTSW	7	62377844	small deletion	probably benign
R7570:Magel2	UTSW	7	62378910	missense	possibly damaging	0.53
R7714:Magel2	UTSW	7	62378382	missense	probably benign	0.08
R7836:Magel2	UTSW	7	62378368	missense	possibly damaging	0.73
R8289:Magel2	UTSW	7	62379127	missense	unknown
R8717:Magel2	UTSW	7	62377672	missense	unknown
R8903:Magel2	UTSW	7	62379693	missense	unknown
R8911:Magel2	UTSW	7	62379789	missense	unknown
R8971:Magel2	UTSW	7	62380251	missense	unknown
R9096:Magel2	UTSW	7	62380549	missense	unknown
R9264:Magel2	UTSW	7	62378596	missense	possibly damaging	0.95
RF022:Magel2	UTSW	7	62380093	missense	unknown
Z1088:Magel2	UTSW	7	62378977	missense	possibly damaging	0.53
Z1177:Magel2	UTSW	7	62379607	missense	unknown

Predicted Primers

PCR Primer
(F):5'- TCTTCAACTCCGGGAGTCCTGATG -3'
(R):5'- GTCTGAATGATTGGACCTCTGGCAC -3'

Sequencing Primer
(F):5'- cctcctcctcctcctccc -3'
(R):5'- CACCTGGAGGATGGATCATCAC -3'

Posted On

2013-05-23