Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL03274:Krt20'

415368

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Krt20

Ensembl Gene

ENSMUSG00000035775

Gene Name

keratin 20

Synonyms

CK20, 9030623C06Rik, cytokeratin 20

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.064) question?

Stock #

IGL03274

Quality Score

Status

Chromosome

Chromosomal Location

99319229-99328976 bp(-) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

A to T at 99320855 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000017743 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000017743]

AlphaFold

Q9D312

Predicted Effect

probably benign
Transcript: ENSMUST00000017743

SMART Domains

Protein: ENSMUSP00000017743
Gene: ENSMUSG00000035775

Domain	Start	End	E-Value	Type
low complexity region	3	26	N/A	INTRINSIC
Filament	76	387	7.19e-146	SMART
low complexity region	410	431	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000128904

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: This gene encodes a member of the keratin protein family and is found within a cluster of cytokeratin genes on chromosome 11. Keratins are cytoskeletal proteins that are preferentially expressed in epithelial cells. The encoded protein may help maintain intermediate filament organization in intestinal epithelium. Phosphorylation of this protein may also influence mucin secretion in the small intestine. [provided by RefSeq, Dec 2015]

Allele List at MGI

Other mutations in this stock

Total: 32 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adissp	A	T	2: 130,995,512 (GRCm39)		probably null	Het
Anln	C	A	9: 22,293,565 (GRCm39)	R26M	probably damaging	Het
Capn15	A	T	17: 26,180,812 (GRCm39)	S753T	probably damaging	Het
Ccdc62	A	G	5: 124,092,743 (GRCm39)	N576S	probably benign	Het
Csmd3	T	C	15: 47,508,900 (GRCm39)	D2895G	probably damaging	Het
Dspp	T	A	5: 104,322,814 (GRCm39)	V37E	probably damaging	Het
Efcab3	A	T	11: 104,611,919 (GRCm39)	D587V	probably benign	Het
Efcab6	T	C	15: 83,752,450 (GRCm39)	D1473G	probably damaging	Het
Ehhadh	T	C	16: 21,582,090 (GRCm39)		probably benign	Het
Fbln1	T	C	15: 85,116,879 (GRCm39)		probably null	Het
Gbp9	A	G	5: 105,230,652 (GRCm39)	V424A	possibly damaging	Het
Gda	T	C	19: 21,394,371 (GRCm39)	Y236C	possibly damaging	Het
Gm4884	A	G	7: 40,693,969 (GRCm39)	E646G	probably damaging	Het
Gm4952	C	A	19: 12,600,960 (GRCm39)		probably benign	Het
Gm5422	G	T	10: 31,126,348 (GRCm39)		noncoding transcript	Het
Grin2b	C	T	6: 135,757,253 (GRCm39)	D403N	possibly damaging	Het
Hsf2bp	G	A	17: 32,226,744 (GRCm39)	R204C	probably damaging	Het
Il16	T	C	7: 83,310,442 (GRCm39)	E488G	probably damaging	Het
Kat6b	G	T	14: 21,659,831 (GRCm39)	D212Y	possibly damaging	Het
Kctd2	A	C	11: 115,320,208 (GRCm39)	I247L	possibly damaging	Het
Kel	T	A	6: 41,664,929 (GRCm39)		probably null	Het
Litaf	T	C	16: 10,784,433 (GRCm39)	T26A	probably damaging	Het
N4bp2l2	G	T	5: 150,584,931 (GRCm39)	Q350K	probably damaging	Het
Nav2	T	G	7: 49,011,847 (GRCm39)	I26S	probably damaging	Het
Nfya	A	G	17: 48,698,375 (GRCm39)	Y162H	probably damaging	Het
Or2g25	C	T	17: 37,970,646 (GRCm39)	A193T	probably benign	Het
Pbx4	A	T	8: 70,319,200 (GRCm39)	S244C	probably damaging	Het
Pcdhb16	T	C	18: 37,612,285 (GRCm39)	V415A	probably benign	Het
Rbbp8	A	G	18: 11,874,133 (GRCm39)		probably benign	Het
Sp100	T	C	1: 85,635,025 (GRCm39)		probably benign	Het
Spag16	A	G	1: 69,883,540 (GRCm39)		probably benign	Het
Star	A	G	8: 26,301,082 (GRCm39)	D138G	possibly damaging	Het

Other mutations in Krt20

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01455:Krt20	APN	11	99,322,769 (GRCm39)	missense	probably benign	0.01
IGL01926:Krt20	APN	11	99,328,652 (GRCm39)	missense	probably damaging	1.00
IGL02105:Krt20	APN	11	99,328,827 (GRCm39)	missense	probably benign	0.01
IGL03225:Krt20	APN	11	99,322,756 (GRCm39)	missense	probably damaging	0.97
IGL03331:Krt20	APN	11	99,326,256 (GRCm39)	splice site	probably null
R0091:Krt20	UTSW	11	99,328,640 (GRCm39)	missense	probably damaging	1.00
R0446:Krt20	UTSW	11	99,328,602 (GRCm39)	nonsense	probably null
R3955:Krt20	UTSW	11	99,323,037 (GRCm39)	nonsense	probably null
R4805:Krt20	UTSW	11	99,319,811 (GRCm39)	missense	unknown
R5156:Krt20	UTSW	11	99,320,879 (GRCm39)	missense	possibly damaging	0.92
R5620:Krt20	UTSW	11	99,326,283 (GRCm39)	missense	probably damaging	1.00
R6716:Krt20	UTSW	11	99,322,754 (GRCm39)	missense	possibly damaging	0.77
R7006:Krt20	UTSW	11	99,328,587 (GRCm39)	missense	probably benign	0.34
R8041:Krt20	UTSW	11	99,328,663 (GRCm39)	missense	probably damaging	1.00
R8296:Krt20	UTSW	11	99,323,063 (GRCm39)	missense	probably damaging	1.00
R9189:Krt20	UTSW	11	99,323,087 (GRCm39)	missense	possibly damaging	0.78

Posted On

2016-08-02