Incidental Mutation 'IGL03284:Srek1'
ID |
415667 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Srek1
|
Ensembl Gene |
ENSMUSG00000032621 |
Gene Name |
splicing regulatory glutamine/lysine-rich protein 1 |
Synonyms |
SRrp86, Sfrs12, AL118220, SRrp508 |
Accession Numbers |
|
Essential gene? |
Probably essential
(E-score: 0.950)
|
Stock # |
IGL03284
|
Quality Score |
|
Status
|
|
Chromosome |
13 |
Chromosomal Location |
103875856-103911116 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
C to A
at 103897045 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Valine to Phenylalanine
at position 99
(V99F)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000147737
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000074616]
[ENSMUST00000210489]
[ENSMUST00000210836]
[ENSMUST00000211322]
|
AlphaFold |
Q8BZX4 |
Predicted Effect |
possibly damaging
Transcript: ENSMUST00000074616
AA Change: V215F
PolyPhen 2
Score 0.583 (Sensitivity: 0.88; Specificity: 0.91)
|
SMART Domains |
Protein: ENSMUSP00000074196 Gene: ENSMUSG00000032621 AA Change: V215F
Domain | Start | End | E-Value | Type |
low complexity region
|
22 |
33 |
N/A |
INTRINSIC |
RRM
|
70 |
141 |
1.22e-18 |
SMART |
coiled coil region
|
259 |
298 |
N/A |
INTRINSIC |
low complexity region
|
356 |
395 |
N/A |
INTRINSIC |
low complexity region
|
397 |
408 |
N/A |
INTRINSIC |
low complexity region
|
414 |
427 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000209961
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000210489
AA Change: V99F
PolyPhen 2
Score 0.960 (Sensitivity: 0.78; Specificity: 0.95)
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000210643
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000210836
AA Change: V99F
PolyPhen 2
Score 0.300 (Sensitivity: 0.90; Specificity: 0.89)
|
Predicted Effect |
possibly damaging
Transcript: ENSMUST00000211322
AA Change: V99F
PolyPhen 2
Score 0.844 (Sensitivity: 0.83; Specificity: 0.93)
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000211491
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of a family of serine/arginine-rich (SR) splicing proteins containing RNA recognition motif (RRM) domains. The encoded protein interacts with other SR proteins to modulate splice site selection. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Jul 2012]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 19 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Adam5 |
A |
T |
8: 25,276,354 (GRCm39) |
|
probably benign |
Het |
Atxn7l3b |
T |
C |
10: 112,764,431 (GRCm39) |
D66G |
probably benign |
Het |
Dmac2 |
T |
C |
7: 25,321,851 (GRCm39) |
|
probably null |
Het |
Ephb2 |
A |
G |
4: 136,388,827 (GRCm39) |
M590T |
probably damaging |
Het |
Fbxo41 |
C |
T |
6: 85,456,747 (GRCm39) |
R474H |
probably damaging |
Het |
Fcgbp |
G |
T |
7: 27,784,857 (GRCm39) |
A306S |
possibly damaging |
Het |
Hapstr1 |
A |
G |
16: 8,673,786 (GRCm39) |
I238V |
possibly damaging |
Het |
Hmg20a |
A |
G |
9: 56,388,901 (GRCm39) |
D156G |
probably benign |
Het |
Mast4 |
A |
G |
13: 102,887,905 (GRCm39) |
V1168A |
probably damaging |
Het |
Oog2 |
A |
G |
4: 143,923,177 (GRCm39) |
|
probably benign |
Het |
Pate12 |
T |
A |
9: 36,344,759 (GRCm39) |
C96S |
probably damaging |
Het |
Pkhd1l1 |
T |
A |
15: 44,410,914 (GRCm39) |
|
probably benign |
Het |
Psmd6 |
A |
T |
14: 14,112,546 (GRCm38) |
N351K |
probably benign |
Het |
Ralgps1 |
T |
C |
2: 33,036,577 (GRCm39) |
|
probably benign |
Het |
Rbl1 |
C |
T |
2: 157,035,989 (GRCm39) |
|
probably benign |
Het |
Smarcc1 |
G |
A |
9: 110,004,142 (GRCm39) |
V399I |
probably benign |
Het |
Styxl1 |
A |
G |
5: 135,785,949 (GRCm39) |
V32A |
possibly damaging |
Het |
Tnn |
C |
T |
1: 159,953,022 (GRCm39) |
V673I |
probably benign |
Het |
Vmn2r107 |
T |
A |
17: 20,577,173 (GRCm39) |
D390E |
probably benign |
Het |
|
Other mutations in Srek1 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01756:Srek1
|
APN |
13 |
103,897,090 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01834:Srek1
|
APN |
13 |
103,885,293 (GRCm39) |
unclassified |
probably benign |
|
IGL03029:Srek1
|
APN |
13 |
103,900,468 (GRCm39) |
utr 5 prime |
probably benign |
|
IGL03198:Srek1
|
APN |
13 |
103,881,443 (GRCm39) |
splice site |
probably null |
|
inscruitable
|
UTSW |
13 |
103,910,894 (GRCm39) |
missense |
probably damaging |
1.00 |
PIT4453001:Srek1
|
UTSW |
13 |
103,881,291 (GRCm39) |
critical splice donor site |
probably null |
|
R0080:Srek1
|
UTSW |
13 |
103,880,194 (GRCm39) |
missense |
unknown |
|
R0082:Srek1
|
UTSW |
13 |
103,880,194 (GRCm39) |
missense |
unknown |
|
R0106:Srek1
|
UTSW |
13 |
103,880,131 (GRCm39) |
missense |
unknown |
|
R0106:Srek1
|
UTSW |
13 |
103,880,131 (GRCm39) |
missense |
unknown |
|
R0506:Srek1
|
UTSW |
13 |
103,897,098 (GRCm39) |
missense |
probably damaging |
0.99 |
R0569:Srek1
|
UTSW |
13 |
103,885,370 (GRCm39) |
unclassified |
probably benign |
|
R0969:Srek1
|
UTSW |
13 |
103,889,011 (GRCm39) |
unclassified |
probably benign |
|
R1617:Srek1
|
UTSW |
13 |
103,880,112 (GRCm39) |
missense |
unknown |
|
R2098:Srek1
|
UTSW |
13 |
103,881,363 (GRCm39) |
missense |
unknown |
|
R2423:Srek1
|
UTSW |
13 |
103,889,536 (GRCm39) |
nonsense |
probably null |
|
R3950:Srek1
|
UTSW |
13 |
103,881,403 (GRCm39) |
missense |
unknown |
|
R4347:Srek1
|
UTSW |
13 |
103,885,267 (GRCm39) |
missense |
probably null |
|
R4676:Srek1
|
UTSW |
13 |
103,894,695 (GRCm39) |
splice site |
probably benign |
|
R4915:Srek1
|
UTSW |
13 |
103,889,194 (GRCm39) |
utr 3 prime |
probably benign |
|
R4915:Srek1
|
UTSW |
13 |
103,889,071 (GRCm39) |
unclassified |
probably benign |
|
R5119:Srek1
|
UTSW |
13 |
103,889,064 (GRCm39) |
unclassified |
probably benign |
|
R5677:Srek1
|
UTSW |
13 |
103,895,752 (GRCm39) |
missense |
probably damaging |
0.98 |
R6135:Srek1
|
UTSW |
13 |
103,910,894 (GRCm39) |
missense |
probably damaging |
1.00 |
R6458:Srek1
|
UTSW |
13 |
103,880,076 (GRCm39) |
missense |
probably benign |
0.01 |
R7406:Srek1
|
UTSW |
13 |
103,905,890 (GRCm39) |
missense |
probably damaging |
1.00 |
R8537:Srek1
|
UTSW |
13 |
103,888,957 (GRCm39) |
unclassified |
probably benign |
|
R9269:Srek1
|
UTSW |
13 |
103,889,654 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
Posted On |
2016-08-02 |