Incidental Mutation 'IGL03309:Scube3'
ID416505
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Scube3
Ensembl Gene ENSMUSG00000038677
Gene Namesignal peptide, CUB domain, EGF-like 3
Synonyms
Accession Numbers
Is this an essential gene? Possibly non essential (E-score: 0.478) question?
Stock #IGL03309
Quality Score
Status
Chromosome17
Chromosomal Location28142316-28174852 bp(+) (GRCm38)
Type of Mutationnonsense
DNA Base Change (assembly) C to T at 28164357 bp
ZygosityHeterozygous
Amino Acid Change Arginine to Stop codon at position 374 (R374*)
Gene Model predicted gene model for transcript(s): [ENSMUST00000043503]
Predicted Effect probably null
Transcript: ENSMUST00000043503
AA Change: R458*
SMART Domains Protein: ENSMUSP00000038366
Gene: ENSMUSG00000038677
AA Change: R458*

DomainStartEndE-ValueType
low complexity region 9 15 N/A INTRINSIC
EGF_CA 29 69 5.23e-9 SMART
EGF_CA 70 111 1.2e-8 SMART
EGF_CA 112 152 1.14e-9 SMART
EGF 160 198 6.65e-2 SMART
EGF 200 237 7.95e0 SMART
EGF 239 276 7.76e-3 SMART
EGF_CA 277 317 7.63e-11 SMART
EGF_CA 318 356 7.01e-10 SMART
EGF_CA 357 398 6.8e-8 SMART
Pfam:GCC2_GCC3 642 689 8.6e-15 PFAM
Pfam:GCC2_GCC3 696 743 4.2e-17 PFAM
Pfam:GCC2_GCC3 752 799 5.8e-17 PFAM
CUB 804 916 1.09e-16 SMART
Blast:CUB 942 988 8e-15 BLAST
Predicted Effect probably null
Transcript: ENSMUST00000132670
AA Change: R374*
SMART Domains Protein: ENSMUSP00000117490
Gene: ENSMUSG00000038677
AA Change: R374*

DomainStartEndE-ValueType
EGF_like 1 28 1.2e-1 SMART
EGF_CA 29 69 1.14e-9 SMART
EGF 77 115 6.65e-2 SMART
EGF 117 154 7.95e0 SMART
EGF 156 193 7.76e-3 SMART
EGF_CA 194 234 7.63e-11 SMART
EGF_CA 235 273 7.01e-10 SMART
EGF_CA 274 315 6.8e-8 SMART
Pfam:GCC2_GCC3 559 606 1.8e-17 PFAM
Pfam:GCC2_GCC3 615 662 4.2e-17 PFAM
CUB 667 779 1.09e-16 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000137147
Predicted Effect noncoding transcript
Transcript: ENSMUST00000142170
Predicted Effect noncoding transcript
Transcript: ENSMUST00000148342
Meta Mutation Damage Score 0.9755 question?
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the signal peptide, complement subcomponents C1r/C1s, Uegf, bone morphogenetic protein-1 and epidermal growth factor-like domain containing protein family. Overexpression of this gene in human embryonic kidney cells results in secretion of a glycosylated form of the protein that forms oligomers and tethers to the cell surface. This gene is upregulated in lung cancer tumor tissue compared to healthy tissue and is associated with loss of the epithelial marker E-cadherin and with increased expression of vimentin, a mesenchymal marker. In addition, the protein encoded by this gene is a transforming growth factor beta receptor ligand, and when secreted by cancer cells, it can be cleaved in vitro to release the N-terminal epidermal growth factor-like repeat domain and the C-terminal complement subcomponents C1r/C1s domain. Both the full length protein and C-terminal fragment can bind to the transforming growth factor beta type II receptor to promote the epithelial-mesenchymal transition and tumor angiogenesis. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2014]
PHENOTYPE: Mice homozygous for a targeted allele encoding a truncated protein exhibit normal morphology. Mice with a point mutation show skeletal abnormalities, bone metabolism alterations, changes in renal function, behavioral alternations and hearing loss. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 33 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aadac A G 3: 60,039,882 T334A possibly damaging Het
Armc9 A G 1: 86,274,433 E771G possibly damaging Het
Cd207 G T 6: 83,677,753 T16K possibly damaging Het
Cd44 C T 2: 102,814,177 E421K probably damaging Het
Cfap221 A G 1: 119,934,601 Y584H probably damaging Het
Clock A G 5: 76,231,394 probably null Het
Clpx T G 9: 65,322,692 L474R probably damaging Het
Cntd1 T C 11: 101,284,764 V143A probably damaging Het
Cttnbp2 A G 6: 18,381,036 V877A probably damaging Het
Dlx6 G T 6: 6,867,289 M158I possibly damaging Het
Fank1 A G 7: 133,862,173 T33A probably damaging Het
Fbf1 A G 11: 116,147,811 L828P probably damaging Het
Fh1 A T 1: 175,604,043 S426T probably benign Het
Gabrg3 G T 7: 56,982,685 Q172K probably damaging Het
Glipr1l1 A G 10: 112,072,236 probably benign Het
Hypk T A 2: 121,458,192 L113* probably null Het
Hypk G T 2: 121,458,193 L113F probably damaging Het
Ipo5 G A 14: 120,920,004 V85I probably benign Het
Kif1a A T 1: 93,058,857 Y575* probably null Het
Morf4l1 T A 9: 90,103,745 E60V probably benign Het
Olfr655 A G 7: 104,597,041 F47L probably benign Het
Olfr782 A T 10: 129,351,309 T249S probably benign Het
Parp4 A T 14: 56,587,808 T130S probably benign Het
Prkd1 A G 12: 50,388,424 Y507H probably damaging Het
Psme2b A C 11: 48,945,799 probably null Het
Rbm44 T C 1: 91,168,840 probably null Het
Rngtt C A 4: 33,339,091 R299S probably damaging Het
Ros1 A G 10: 52,118,261 S1308P possibly damaging Het
Rpl3l A G 17: 24,736,024 K398E possibly damaging Het
Srcap A G 7: 127,530,793 T616A probably damaging Het
Stk3 G A 15: 35,099,551 probably benign Het
Tas2r124 A T 6: 132,754,935 D69V probably benign Het
Zbtb41 T A 1: 139,432,078 probably null Het
Other mutations in Scube3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02019:Scube3 APN 17 28167684 missense probably damaging 1.00
IGL02189:Scube3 APN 17 28162996 missense probably benign
IGL02416:Scube3 APN 17 28164136 missense probably damaging 1.00
IGL02904:Scube3 APN 17 28167600 missense probably benign 0.01
IGL03153:Scube3 APN 17 28167058 missense possibly damaging 0.54
dinklage UTSW 17 28162388 missense probably damaging 1.00
R0027:Scube3 UTSW 17 28164357 nonsense probably null
R0084:Scube3 UTSW 17 28162961 missense probably benign 0.12
R0122:Scube3 UTSW 17 28166528 splice site probably benign
R0544:Scube3 UTSW 17 28164153 missense probably damaging 1.00
R1779:Scube3 UTSW 17 28168379 splice site probably benign
R1842:Scube3 UTSW 17 28165089 missense probably damaging 1.00
R1878:Scube3 UTSW 17 28152413 missense probably benign 0.10
R1950:Scube3 UTSW 17 28164300 missense possibly damaging 0.66
R2011:Scube3 UTSW 17 28168158 missense probably damaging 0.99
R2164:Scube3 UTSW 17 28166134 missense possibly damaging 0.64
R4356:Scube3 UTSW 17 28164309 missense probably benign 0.01
R4392:Scube3 UTSW 17 28164788 missense probably null
R4528:Scube3 UTSW 17 28162999 missense possibly damaging 0.82
R4709:Scube3 UTSW 17 28167192 splice site probably null
R4809:Scube3 UTSW 17 28165173 missense probably damaging 1.00
R4832:Scube3 UTSW 17 28166015 missense probably damaging 0.98
R4841:Scube3 UTSW 17 28164123 missense probably damaging 1.00
R4842:Scube3 UTSW 17 28164123 missense probably damaging 1.00
R5372:Scube3 UTSW 17 28152482 missense probably damaging 0.99
R5889:Scube3 UTSW 17 28160913 missense possibly damaging 0.84
R5936:Scube3 UTSW 17 28165487 missense probably damaging 1.00
R6523:Scube3 UTSW 17 28162388 missense probably damaging 1.00
R7051:Scube3 UTSW 17 28167599 missense probably benign
R7337:Scube3 UTSW 17 28168182 missense probably damaging 1.00
R7699:Scube3 UTSW 17 28167049 missense probably damaging 1.00
R7700:Scube3 UTSW 17 28167049 missense probably damaging 1.00
R7848:Scube3 UTSW 17 28165595 missense probably benign
R7950:Scube3 UTSW 17 28171226 missense probably benign 0.11
RF009:Scube3 UTSW 17 28168397 missense probably damaging 1.00
Posted On2016-08-02