Mutagenetix > Incidental Mutations

Incidental Mutation 'R0467:Abca17'

41714

Institutional Source

Beutler Lab

Gene Symbol

Abca17

Ensembl Gene

ENSMUSG00000035435

Gene Name

ATP-binding cassette, sub-family A (ABC1), member 17

Synonyms

MMRRC Submission

038667-MU

Accession Numbers

Is this an essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0467 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

24264259-24351029 bp(-) (GRCm38)

Type of Mutation

splice site

DNA Base Change (assembly)

A to G at 24313177 bp

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000112538 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000039324] [ENSMUST00000121226]

Predicted Effect

probably benign
Transcript: ENSMUST00000039324

SMART Domains

Protein: ENSMUSP00000046218
Gene: ENSMUSG00000035435

Domain	Start	End	E-Value	Type
low complexity region	4	18	N/A	INTRINSIC
transmembrane domain	22	44	N/A	INTRINSIC
Pfam:ABC2_membrane_3	252	464	9.5e-17	PFAM
AAA	547	729	5.71e-12	SMART
low complexity region	846	857	N/A	INTRINSIC
Pfam:ABC2_membrane_3	905	1307	6.7e-35	PFAM
low complexity region	1337	1351	N/A	INTRINSIC
AAA	1393	1577	1.15e-1	SMART
low complexity region	1697	1730	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000121226

SMART Domains

Protein: ENSMUSP00000112538
Gene: ENSMUSG00000035435

Domain	Start	End	E-Value	Type
low complexity region	4	18	N/A	INTRINSIC
Pfam:ABC2_membrane_3	21	464	1.2e-15	PFAM
AAA	547	729	5.71e-12	SMART
low complexity region	846	857	N/A	INTRINSIC
Pfam:ABC2_membrane_3	905	1307	1.1e-32	PFAM
low complexity region	1337	1351	N/A	INTRINSIC
AAA	1393	1577	1.15e-1	SMART
low complexity region	1697	1730	N/A	INTRINSIC

Coding Region Coverage

1x: 99.6%
3x: 98.8%
10x: 96.7%
20x: 93.3%

Validation Efficiency

98% (52/53)

Allele List at MGI

Other mutations in this stock

Total: 49 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700022I11Rik	T	C	4: 42,972,715	S683P	probably benign	Het
2310007B03Rik	A	T	1: 93,153,044	I380N	probably damaging	Het
4931423N10Rik	A	G	2: 23,212,820	E190G	possibly damaging	Het
4933416C03Rik	G	A	10: 116,113,153	A156V	probably benign	Het
Anapc1	A	G	2: 128,669,043	I511T	probably damaging	Het
Atf6	A	T	1: 170,794,020	H477Q	probably damaging	Het
C4b	A	G	17: 34,736,127	V795A	probably benign	Het
Cdh26	C	T	2: 178,481,632	R675C	possibly damaging	Het
Cdk12	T	C	11: 98,203,579	V71A	probably damaging	Het
Cul3	A	T	1: 80,280,863	D419E	probably benign	Het
Ddi2	A	G	4: 141,685,184	I139T	probably benign	Het
Dnaaf1	T	A	8: 119,590,732	D333E	probably benign	Het
Dnase1	A	G	16: 4,039,149	D7G	probably damaging	Het
Fam71f1	G	A	6: 29,326,607	S241N	probably damaging	Het
G3bp1	T	C	11: 55,498,626	F383L	probably damaging	Het
Galc	A	C	12: 98,242,645	I250R	probably damaging	Het
Gcfc2	T	C	6: 81,923,882	V59A	possibly damaging	Het
Gm6133	A	C	18: 78,350,090	S100R	probably benign	Het
Iba57	T	C	11: 59,163,439	T85A	probably benign	Het
Ipo4	A	T	14: 55,635,526	M1K	probably null	Het
Ippk	A	G	13: 49,430,865		probably null	Het
Kcnk10	A	T	12: 98,489,945	I209N	probably benign	Het
Klk14	T	C	7: 43,694,110	L122P	probably benign	Het
Ltbp1	T	A	17: 75,282,429		probably null	Het
Mcm3	T	C	1: 20,804,847	D737G	probably benign	Het
Naip2	A	C	13: 100,161,782	I582S	probably benign	Het
Nalcn	T	A	14: 123,291,047	T1456S	probably benign	Het
Nckap1l	C	T	15: 103,497,427	P1097S	probably benign	Het
Ncoa1	A	G	12: 4,267,687	M1215T	possibly damaging	Het
Nomo1	T	A	7: 46,072,487		probably null	Het
Obox5	T	A	7: 15,758,007	C116S	possibly damaging	Het
Olfr644	C	T	7: 104,068,125	R302H	probably benign	Het
Olfr701	T	A	7: 106,818,361	S93T	possibly damaging	Het
Olfr76	C	A	19: 12,120,536	A59S	probably benign	Het
Pcdhb14	G	T	18: 37,449,224	R461L	probably damaging	Het
Pdgfra	A	G	5: 75,195,036	D1069G	probably damaging	Het
Pgr	C	T	9: 8,900,778	A104V	possibly damaging	Het
Pkd1l3	C	G	8: 109,623,649	D375E	possibly damaging	Het
Rassf3	A	G	10: 121,417,204		probably benign	Het
Rgs22	G	T	15: 36,099,795	S258*	probably null	Het
Rsph6a	C	A	7: 19,057,669	D254E	possibly damaging	Het
Sgk1	A	G	10: 21,996,358		probably benign	Het
Shcbp1l	G	A	1: 153,433,182	C174Y	probably damaging	Het
Sulf1	T	A	1: 12,796,920	N109K	probably damaging	Het
Tas2r115	T	A	6: 132,737,719	I90L	probably benign	Het
Tmem200a	T	C	10: 25,994,104	H89R	probably benign	Het
Ubxn4	G	A	1: 128,262,904	E256K	probably benign	Het
Xrn1	T	C	9: 96,024,191	S1212P	probably damaging	Het
Zfp408	T	C	2: 91,645,537	Y424C	possibly damaging	Het

Other mutations in Abca17

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00402:Abca17	APN	17	24295191	missense	probably benign	0.14
IGL00585:Abca17	APN	17	24300320	missense	probably damaging	0.99
IGL00941:Abca17	APN	17	24317130	missense	probably damaging	1.00
IGL01987:Abca17	APN	17	24346228	missense	probably benign	0.00
IGL01988:Abca17	APN	17	24334255	missense	probably damaging	0.99
IGL02223:Abca17	APN	17	24287935	nonsense	probably null
IGL02368:Abca17	APN	17	24287793	missense	probably benign	0.01
IGL02405:Abca17	APN	17	24279062	missense	possibly damaging	0.80
IGL02431:Abca17	APN	17	24298984	missense	probably benign	0.05
IGL02607:Abca17	APN	17	24327705	nonsense	probably null
IGL02706:Abca17	APN	17	24298992	missense	probably benign	0.00
IGL02729:Abca17	APN	17	24280481	missense	probably benign	0.06
IGL02818:Abca17	APN	17	24300352	missense	probably benign	0.02
IGL02891:Abca17	APN	17	24281366	missense	probably damaging	0.99
IGL03236:Abca17	APN	17	24326476	splice site	probably benign
IGL03299:Abca17	APN	17	24265591	missense	probably damaging	1.00
R0018:Abca17	UTSW	17	24313188	splice site	probably null
R0671:Abca17	UTSW	17	24281249	missense	probably benign	0.00
R1175:Abca17	UTSW	17	24289351	missense	possibly damaging	0.91
R1397:Abca17	UTSW	17	24285759	missense	probably benign	0.18
R1398:Abca17	UTSW	17	24328537	missense	probably damaging	0.96
R1678:Abca17	UTSW	17	24335620	missense	probably benign	0.05
R1696:Abca17	UTSW	17	24267658	missense	possibly damaging	0.90
R1781:Abca17	UTSW	17	24267557	missense	possibly damaging	0.95
R1845:Abca17	UTSW	17	24267716	missense	probably damaging	1.00
R1970:Abca17	UTSW	17	24307575	missense	probably benign	0.00
R1997:Abca17	UTSW	17	24285726	missense	probably benign	0.02
R2141:Abca17	UTSW	17	24334266	missense	probably benign	0.00
R2199:Abca17	UTSW	17	24335624	missense	probably benign	0.19
R2394:Abca17	UTSW	17	24281216	splice site	probably null
R2442:Abca17	UTSW	17	24328632	missense	probably benign	0.02
R2509:Abca17	UTSW	17	24289613	splice site	probably benign
R2848:Abca17	UTSW	17	24289507	missense	probably damaging	0.96
R2849:Abca17	UTSW	17	24289507	missense	probably damaging	0.96
R2859:Abca17	UTSW	17	24281314	missense	possibly damaging	0.46
R2879:Abca17	UTSW	17	24289507	missense	probably damaging	0.96
R2935:Abca17	UTSW	17	24289507	missense	probably damaging	0.96
R3153:Abca17	UTSW	17	24328746	missense	probably damaging	1.00
R3154:Abca17	UTSW	17	24328746	missense	probably damaging	1.00
R3434:Abca17	UTSW	17	24289537	missense	probably damaging	1.00
R3695:Abca17	UTSW	17	24289507	missense	probably damaging	0.96
R3905:Abca17	UTSW	17	24296283	missense	probably benign	0.13
R4282:Abca17	UTSW	17	24299060	missense	possibly damaging	0.49
R4334:Abca17	UTSW	17	24318268	missense	probably damaging	1.00
R4350:Abca17	UTSW	17	24279046	critical splice donor site	probably null
R4548:Abca17	UTSW	17	24334271	missense	possibly damaging	0.82
R4626:Abca17	UTSW	17	24321084	missense	probably damaging	1.00
R4722:Abca17	UTSW	17	24265429	missense	probably damaging	1.00
R4745:Abca17	UTSW	17	24307453	missense	probably damaging	1.00
R4818:Abca17	UTSW	17	24317161	missense	probably damaging	0.98
R5279:Abca17	UTSW	17	24289414	missense	probably damaging	1.00
R5310:Abca17	UTSW	17	24281230	missense	probably benign	0.00
R5320:Abca17	UTSW	17	24307567	missense	probably damaging	1.00
R5435:Abca17	UTSW	17	24267614	missense	possibly damaging	0.90
R5622:Abca17	UTSW	17	24327668	missense	probably benign	0.14
R5776:Abca17	UTSW	17	24295158	missense	probably benign	0.09
R5928:Abca17	UTSW	17	24318185	missense	probably benign	0.01
R6013:Abca17	UTSW	17	24287846	missense	possibly damaging	0.79
R6035:Abca17	UTSW	17	24281245	missense	possibly damaging	0.79
R6035:Abca17	UTSW	17	24281245	missense	possibly damaging	0.79
R6052:Abca17	UTSW	17	24318191	missense	probably benign	0.00
R6063:Abca17	UTSW	17	24264344	missense	unknown
R6404:Abca17	UTSW	17	24265918	missense	probably benign	0.13
R6746:Abca17	UTSW	17	24346221	nonsense	probably null
R6819:Abca17	UTSW	17	24287793	missense	probably benign	0.01
R6828:Abca17	UTSW	17	24326415	missense	possibly damaging	0.91
R7043:Abca17	UTSW	17	24265500	missense	probably damaging	1.00
R7065:Abca17	UTSW	17	24327751	missense	probably damaging	1.00
R7123:Abca17	UTSW	17	24265975	missense	probably damaging	1.00
R7157:Abca17	UTSW	17	24335590	missense	possibly damaging	0.46
R7188:Abca17	UTSW	17	24335626	missense	possibly damaging	0.89
R7294:Abca17	UTSW	17	24321009	missense	not run
R7352:Abca17	UTSW	17	24289054	nonsense	probably null
R7355:Abca17	UTSW	17	24267647	missense	probably benign	0.00
R7358:Abca17	UTSW	17	24291555	missense	probably benign	0.00
R7411:Abca17	UTSW	17	24328569	missense	possibly damaging	0.52
R8039:Abca17	UTSW	17	24328725	missense	probably damaging	1.00
R8095:Abca17	UTSW	17	24317222	missense	possibly damaging	0.77
R8308:Abca17	UTSW	17	24267683	missense	probably damaging	1.00
RF024:Abca17	UTSW	17	24287732	frame shift	probably null
RF029:Abca17	UTSW	17	24287727	critical splice donor site	probably benign
RF032:Abca17	UTSW	17	24287727	frame shift	probably null
RF036:Abca17	UTSW	17	24287727	critical splice donor site	probably benign
X0017:Abca17	UTSW	17	24317163	missense	probably benign	0.26
X0065:Abca17	UTSW	17	24334284	missense	probably damaging	1.00
Z1088:Abca17	UTSW	17	24279079	missense	probably damaging	0.96
Z1088:Abca17	UTSW	17	24279107	missense	probably benign	0.03
Z1088:Abca17	UTSW	17	24346219	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- TGCCACAGTGAACGAAATGTAGCTC -3'
(R):5'- ACTTGCCATATTCTTCAGGACTGCC -3'

Sequencing Primer
(F):5'- aaaaaccaaaccaaaccaaacc -3'
(R):5'- CAGGACTGCCTCTCTGTGTG -3'

Posted On

2013-05-23