Mutagenetix > Incidental Mutation

Incidental Mutation 'R0468:Slamf1'

41722

Institutional Source

Beutler Lab

Gene Symbol

Slamf1

Ensembl Gene

ENSMUSG00000015316

Gene Name

signaling lymphocytic activation molecule family member 1

Synonyms

ESTM51, Slam, CDw150, IPO-3, CD150

MMRRC Submission

038668-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0468 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

171594700-171628752 bp(+) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

A to G at 171619939 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000015460 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000015460]

AlphaFold

Q9QUM4

Predicted Effect

probably benign
Transcript: ENSMUST00000015460

SMART Domains

Protein: ENSMUSP00000015460
Gene: ENSMUSG00000015316

Domain	Start	End	E-Value	Type
Pfam:SLAM	1	126	3.1e-62	PFAM
SCOP:d1cs6a3	144	231	6e-5	SMART
Blast:IG_like	154	224	5e-6	BLAST
transmembrane domain	243	265	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000163992

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.8%
20x: 94.2%

Validation Efficiency

100% (61/61)

MGI Phenotype

PHENOTYPE: Homozygous null mice are fertile and display impaired T cell and macrophage cytokine production. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 56 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2700049A03Rik	A	G	12: 71,240,084 (GRCm39)	H1298R	possibly damaging	Het
5530400C23Rik	T	C	6: 133,271,421 (GRCm39)	L155P	probably benign	Het
6820408C15Rik	A	T	2: 152,283,186 (GRCm39)	R283S	probably benign	Het
Aldh1l2	T	A	10: 83,354,542 (GRCm39)	E104D	probably benign	Het
Anxa3	T	C	5: 96,958,958 (GRCm39)	V22A	probably benign	Het
Bcl7b	T	C	5: 135,209,737 (GRCm39)	F188L	probably benign	Het
Brinp1	T	A	4: 68,681,013 (GRCm39)	I506F	probably damaging	Het
Bsdc1	T	C	4: 129,355,511 (GRCm39)		probably benign	Het
Ccdc180	T	C	4: 45,923,271 (GRCm39)	I1075T	possibly damaging	Het
Cep162	A	G	9: 87,075,750 (GRCm39)	L1294P	probably damaging	Het
Cltc	G	A	11: 86,595,452 (GRCm39)		probably benign	Het
Col11a1	T	C	3: 114,010,707 (GRCm39)		probably benign	Het
Col14a1	A	T	15: 55,252,042 (GRCm39)	Y566F	unknown	Het
Dhx29	A	G	13: 113,099,811 (GRCm39)	Q1148R	probably benign	Het
Ehbp1	A	G	11: 22,119,184 (GRCm39)		probably benign	Het
Ehd3	A	G	17: 74,112,374 (GRCm39)	H46R	probably damaging	Het
Fam171a1	T	C	2: 3,226,433 (GRCm39)	V522A	probably benign	Het
Gm4553	C	A	7: 141,719,362 (GRCm39)	C22F	unknown	Het
Hibadh	C	T	6: 52,534,755 (GRCm39)		probably benign	Het
Hspg2	G	A	4: 137,260,840 (GRCm39)	C1613Y	probably damaging	Het
Hydin	G	T	8: 111,139,855 (GRCm39)	C708F	possibly damaging	Het
Ifi208	A	T	1: 173,511,047 (GRCm39)	M401L	probably benign	Het
Igsf8	G	A	1: 172,146,363 (GRCm39)	V454M	probably damaging	Het
Irx4	G	T	13: 73,414,839 (GRCm39)		probably benign	Het
Kcnh4	C	T	11: 100,637,758 (GRCm39)	G633E	probably benign	Het
Kcnn2	C	T	18: 45,692,538 (GRCm39)	T38M	possibly damaging	Het
L3mbtl3	C	T	10: 26,203,630 (GRCm39)	R400H	unknown	Het
Lrp6	T	C	6: 134,462,624 (GRCm39)	T679A	possibly damaging	Het
Map9	T	C	3: 82,281,510 (GRCm39)		probably null	Het
Men1	T	A	19: 6,386,953 (GRCm39)	V5E	probably null	Het
Mettl14	T	C	3: 123,165,061 (GRCm39)	D93G	probably damaging	Het
Neb	G	T	2: 52,101,568 (GRCm39)	R4601S	probably damaging	Het
Nell1	A	G	7: 49,878,594 (GRCm39)	T272A	probably damaging	Het
Or10ag53	A	T	2: 87,082,599 (GRCm39)	N106I	probably benign	Het
Or2ak6	A	T	11: 58,592,619 (GRCm39)	I31F	probably damaging	Het
Pclo	C	A	5: 14,727,302 (GRCm39)		probably benign	Het
Pdia5	A	G	16: 35,217,877 (GRCm39)	L502P	probably damaging	Het
Pkd1l3	C	G	8: 110,350,281 (GRCm39)	D375E	possibly damaging	Het
Plxna4	C	A	6: 32,192,181 (GRCm39)	C803F	probably damaging	Het
Pmfbp1	A	G	8: 110,240,600 (GRCm39)		probably null	Het
Ptgs1	A	G	2: 36,139,205 (GRCm39)	Y468C	probably damaging	Het
Pxdn	G	T	12: 30,044,485 (GRCm39)	G488W	probably damaging	Het
Safb	C	T	17: 56,913,025 (GRCm39)	R914C	probably damaging	Het
Sec31b	T	A	19: 44,506,947 (GRCm39)		probably benign	Het
Shank3	G	A	15: 89,433,478 (GRCm39)	V1333I	probably benign	Het
Slc23a3	T	A	1: 75,109,874 (GRCm39)	Q131L	possibly damaging	Het
Slc7a11	A	G	3: 50,338,500 (GRCm39)	V303A	probably damaging	Het
Slc7a13	T	A	4: 19,841,500 (GRCm39)	V449D	probably benign	Het
Srp68	A	T	11: 116,139,590 (GRCm39)	I453K	probably damaging	Het
Steap3	A	T	1: 120,162,030 (GRCm39)	V414D	probably damaging	Het
Tagln2	A	G	1: 172,333,788 (GRCm39)	N131D	probably benign	Het
Tmem132d	T	C	5: 128,346,267 (GRCm39)	Y85C	probably damaging	Het
Vcam1	A	T	3: 115,909,595 (GRCm39)	Y577*	probably null	Het
Vmn1r214	A	G	13: 23,219,423 (GRCm39)	T306A	probably benign	Het
Zfyve1	A	T	12: 83,602,048 (GRCm39)		probably benign	Het
Zgrf1	T	A	3: 127,355,690 (GRCm39)	N305K	possibly damaging	Het

Other mutations in Slamf1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02559:Slamf1	APN	1	171,594,826 (GRCm39)	missense	possibly damaging	0.46
IGL03138:Slamf1	UTSW	1	171,604,652 (GRCm39)	missense	possibly damaging	0.81
R1760:Slamf1	UTSW	1	171,604,734 (GRCm39)	missense	probably benign	0.16
R2149:Slamf1	UTSW	1	171,594,840 (GRCm39)	missense	probably damaging	1.00
R3755:Slamf1	UTSW	1	171,604,728 (GRCm39)	missense	probably damaging	0.99
R3808:Slamf1	UTSW	1	171,625,745 (GRCm39)	missense	probably null	0.70
R3809:Slamf1	UTSW	1	171,625,745 (GRCm39)	missense	probably null	0.70
R4321:Slamf1	UTSW	1	171,602,694 (GRCm39)	critical splice donor site	probably null
R4780:Slamf1	UTSW	1	171,604,829 (GRCm39)	missense	probably benign	0.04
R5566:Slamf1	UTSW	1	171,615,538 (GRCm39)	missense	possibly damaging	0.48
R5807:Slamf1	UTSW	1	171,602,630 (GRCm39)	missense	probably damaging	1.00
R7092:Slamf1	UTSW	1	171,604,757 (GRCm39)	missense	probably benign
R7727:Slamf1	UTSW	1	171,602,467 (GRCm39)	missense	possibly damaging	0.51
R8146:Slamf1	UTSW	1	171,619,887 (GRCm39)	missense	probably benign	0.10
R8252:Slamf1	UTSW	1	171,594,796 (GRCm39)	start codon destroyed	probably null	0.99
R9084:Slamf1	UTSW	1	171,602,522 (GRCm39)	missense	probably damaging	1.00
R9603:Slamf1	UTSW	1	171,625,771 (GRCm39)	missense	probably damaging	1.00
Z1088:Slamf1	UTSW	1	171,627,160 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AGCTGTGACCTCAGGAAACCTAGAA -3'
(R):5'- GAATACCACTGCTGGAAAGTATCCAAGG -3'

Sequencing Primer
(F):5'- ggaggaggaagagagaggg -3'
(R):5'- CTGGAAAGTATCCAAGGTCATGTTC -3'

Posted On

2013-05-23