Mutagenetix > Incidental Mutation

Incidental Mutation 'R0468:Vmn1r214'

41765

Institutional Source

Beutler Lab

Gene Symbol

Vmn1r214

Ensembl Gene

ENSMUSG00000061829

Gene Name

vomeronasal 1 receptor 214

Synonyms

V1rh5

MMRRC Submission

038668-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.050) question?

Stock #

R0468 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

23218508-23219611 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 23219423 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 306 (T306A)

Ref Sequence

ENSEMBL: ENSMUSP00000153823 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000074252] [ENSMUST00000227236] [ENSMUST00000227652]

AlphaFold

Q8R279

Predicted Effect

probably benign
Transcript: ENSMUST00000074252
AA Change: T306A

PolyPhen 2 Score 0.044 (Sensitivity: 0.94; Specificity: 0.83)

SMART Domains

Protein: ENSMUSP00000073868
Gene: ENSMUSG00000061829
AA Change: T306A

Domain	Start	End	E-Value	Type
transmembrane domain	17	39	N/A	INTRINSIC
Pfam:TAS2R	42	346	7.5e-9	PFAM
Pfam:V1R	75	337	5.3e-32	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000227236
AA Change: T306A

PolyPhen 2 Score 0.044 (Sensitivity: 0.94; Specificity: 0.83)

Predicted Effect

probably benign
Transcript: ENSMUST00000227652
AA Change: T306A

PolyPhen 2 Score 0.044 (Sensitivity: 0.94; Specificity: 0.83)

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.8%
20x: 94.2%

Validation Efficiency

100% (61/61)

Allele List at MGI

Other mutations in this stock

Total: 56 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2700049A03Rik	A	G	12: 71,240,084 (GRCm39)	H1298R	possibly damaging	Het
5530400C23Rik	T	C	6: 133,271,421 (GRCm39)	L155P	probably benign	Het
6820408C15Rik	A	T	2: 152,283,186 (GRCm39)	R283S	probably benign	Het
Aldh1l2	T	A	10: 83,354,542 (GRCm39)	E104D	probably benign	Het
Anxa3	T	C	5: 96,958,958 (GRCm39)	V22A	probably benign	Het
Bcl7b	T	C	5: 135,209,737 (GRCm39)	F188L	probably benign	Het
Brinp1	T	A	4: 68,681,013 (GRCm39)	I506F	probably damaging	Het
Bsdc1	T	C	4: 129,355,511 (GRCm39)		probably benign	Het
Ccdc180	T	C	4: 45,923,271 (GRCm39)	I1075T	possibly damaging	Het
Cep162	A	G	9: 87,075,750 (GRCm39)	L1294P	probably damaging	Het
Cltc	G	A	11: 86,595,452 (GRCm39)		probably benign	Het
Col11a1	T	C	3: 114,010,707 (GRCm39)		probably benign	Het
Col14a1	A	T	15: 55,252,042 (GRCm39)	Y566F	unknown	Het
Dhx29	A	G	13: 113,099,811 (GRCm39)	Q1148R	probably benign	Het
Ehbp1	A	G	11: 22,119,184 (GRCm39)		probably benign	Het
Ehd3	A	G	17: 74,112,374 (GRCm39)	H46R	probably damaging	Het
Fam171a1	T	C	2: 3,226,433 (GRCm39)	V522A	probably benign	Het
Gm4553	C	A	7: 141,719,362 (GRCm39)	C22F	unknown	Het
Hibadh	C	T	6: 52,534,755 (GRCm39)		probably benign	Het
Hspg2	G	A	4: 137,260,840 (GRCm39)	C1613Y	probably damaging	Het
Hydin	G	T	8: 111,139,855 (GRCm39)	C708F	possibly damaging	Het
Ifi208	A	T	1: 173,511,047 (GRCm39)	M401L	probably benign	Het
Igsf8	G	A	1: 172,146,363 (GRCm39)	V454M	probably damaging	Het
Irx4	G	T	13: 73,414,839 (GRCm39)		probably benign	Het
Kcnh4	C	T	11: 100,637,758 (GRCm39)	G633E	probably benign	Het
Kcnn2	C	T	18: 45,692,538 (GRCm39)	T38M	possibly damaging	Het
L3mbtl3	C	T	10: 26,203,630 (GRCm39)	R400H	unknown	Het
Lrp6	T	C	6: 134,462,624 (GRCm39)	T679A	possibly damaging	Het
Map9	T	C	3: 82,281,510 (GRCm39)		probably null	Het
Men1	T	A	19: 6,386,953 (GRCm39)	V5E	probably null	Het
Mettl14	T	C	3: 123,165,061 (GRCm39)	D93G	probably damaging	Het
Neb	G	T	2: 52,101,568 (GRCm39)	R4601S	probably damaging	Het
Nell1	A	G	7: 49,878,594 (GRCm39)	T272A	probably damaging	Het
Or10ag53	A	T	2: 87,082,599 (GRCm39)	N106I	probably benign	Het
Or2ak6	A	T	11: 58,592,619 (GRCm39)	I31F	probably damaging	Het
Pclo	C	A	5: 14,727,302 (GRCm39)		probably benign	Het
Pdia5	A	G	16: 35,217,877 (GRCm39)	L502P	probably damaging	Het
Pkd1l3	C	G	8: 110,350,281 (GRCm39)	D375E	possibly damaging	Het
Plxna4	C	A	6: 32,192,181 (GRCm39)	C803F	probably damaging	Het
Pmfbp1	A	G	8: 110,240,600 (GRCm39)		probably null	Het
Ptgs1	A	G	2: 36,139,205 (GRCm39)	Y468C	probably damaging	Het
Pxdn	G	T	12: 30,044,485 (GRCm39)	G488W	probably damaging	Het
Safb	C	T	17: 56,913,025 (GRCm39)	R914C	probably damaging	Het
Sec31b	T	A	19: 44,506,947 (GRCm39)		probably benign	Het
Shank3	G	A	15: 89,433,478 (GRCm39)	V1333I	probably benign	Het
Slamf1	A	G	1: 171,619,939 (GRCm39)		probably benign	Het
Slc23a3	T	A	1: 75,109,874 (GRCm39)	Q131L	possibly damaging	Het
Slc7a11	A	G	3: 50,338,500 (GRCm39)	V303A	probably damaging	Het
Slc7a13	T	A	4: 19,841,500 (GRCm39)	V449D	probably benign	Het
Srp68	A	T	11: 116,139,590 (GRCm39)	I453K	probably damaging	Het
Steap3	A	T	1: 120,162,030 (GRCm39)	V414D	probably damaging	Het
Tagln2	A	G	1: 172,333,788 (GRCm39)	N131D	probably benign	Het
Tmem132d	T	C	5: 128,346,267 (GRCm39)	Y85C	probably damaging	Het
Vcam1	A	T	3: 115,909,595 (GRCm39)	Y577*	probably null	Het
Zfyve1	A	T	12: 83,602,048 (GRCm39)		probably benign	Het
Zgrf1	T	A	3: 127,355,690 (GRCm39)	N305K	possibly damaging	Het

Other mutations in Vmn1r214

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01072:Vmn1r214	APN	13	23,219,300 (GRCm39)	missense	possibly damaging	0.58
IGL01759:Vmn1r214	APN	13	23,218,662 (GRCm39)	missense	probably benign	0.00
IGL02000:Vmn1r214	APN	13	23,219,270 (GRCm39)	missense	possibly damaging	0.90
R0115:Vmn1r214	UTSW	13	23,219,464 (GRCm39)	nonsense	probably null
R0481:Vmn1r214	UTSW	13	23,219,464 (GRCm39)	nonsense	probably null
R0574:Vmn1r214	UTSW	13	23,218,663 (GRCm39)	missense	probably benign	0.19
R0686:Vmn1r214	UTSW	13	23,218,962 (GRCm39)	missense	probably damaging	1.00
R1931:Vmn1r214	UTSW	13	23,219,494 (GRCm39)	missense	possibly damaging	0.46
R3893:Vmn1r214	UTSW	13	23,218,811 (GRCm39)	missense	probably benign	0.00
R4013:Vmn1r214	UTSW	13	23,219,520 (GRCm39)	missense	probably benign	0.21
R4014:Vmn1r214	UTSW	13	23,219,520 (GRCm39)	missense	probably benign	0.21
R4015:Vmn1r214	UTSW	13	23,219,520 (GRCm39)	missense	probably benign	0.21
R4670:Vmn1r214	UTSW	13	23,219,141 (GRCm39)	missense	probably benign	0.01
R5091:Vmn1r214	UTSW	13	23,219,571 (GRCm39)	missense	possibly damaging	0.46
R5817:Vmn1r214	UTSW	13	23,219,491 (GRCm39)	missense	probably damaging	0.98
R6504:Vmn1r214	UTSW	13	23,219,610 (GRCm39)	makesense	probably null
R7096:Vmn1r214	UTSW	13	23,219,196 (GRCm39)	missense	probably damaging	1.00
R7141:Vmn1r214	UTSW	13	23,218,839 (GRCm39)	missense	probably benign	0.41
R7293:Vmn1r214	UTSW	13	23,218,839 (GRCm39)	missense	probably benign	0.41
R7759:Vmn1r214	UTSW	13	23,218,631 (GRCm39)	missense	not run
R8805:Vmn1r214	UTSW	13	23,219,273 (GRCm39)	missense	possibly damaging	0.95
R8810:Vmn1r214	UTSW	13	23,219,082 (GRCm39)	missense	probably benign	0.36
R9383:Vmn1r214	UTSW	13	23,219,095 (GRCm39)	missense	probably benign	0.00
R9660:Vmn1r214	UTSW	13	23,219,007 (GRCm39)	missense	probably benign	0.00
R9711:Vmn1r214	UTSW	13	23,218,508 (GRCm39)	start codon destroyed	probably null	0.01
R9728:Vmn1r214	UTSW	13	23,219,007 (GRCm39)	missense	probably benign	0.00
X0002:Vmn1r214	UTSW	13	23,218,971 (GRCm39)	missense	probably damaging	0.98
Z1176:Vmn1r214	UTSW	13	23,218,665 (GRCm39)	missense	possibly damaging	0.87

Predicted Primers

PCR Primer
(F):5'- TCTCATGGTCCTGAGAGATGCAGTG -3'
(R):5'- ACCTCAGTGCAAGGCTTGAGTAAC -3'

Sequencing Primer
(F):5'- GCTACATGGTATTTCTTCTCCACAAG -3'
(R):5'- CCACAGTGTTGCAGAACTGAG -3'

Posted On

2013-05-23