Incidental Mutation 'IGL03115:Slc23a2'
| ID |
419389 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Slc23a2
|
| Ensembl Gene |
ENSMUSG00000027340 |
| Gene Name |
solute carrier family 23 (nucleobase transporters), member 2 |
| Synonyms |
YSPL3, SVCT2, Slc23a1 |
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
IGL03115
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
2 |
| Chromosomal Location |
131894416-131987028 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 131933185 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Tyrosine to Cysteine
at position 91
(Y91C)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000028815
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000028815]
[ENSMUST00000128899]
|
| AlphaFold |
Q9EPR4 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000028815
AA Change: Y91C
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000028815
Gene: ENSMUSG00000027340
AA Change: Y91C
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Xan_ur_permease
|
101 |
534 |
1.7e-93 |
PFAM |
|
transmembrane domain
|
547 |
566 |
N/A |
INTRINSIC |
|
low complexity region
|
578 |
592 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000127724
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000128899
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000133407
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The absorption of vitamin C into the body and its distribution to organs requires two sodium-dependent vitamin C transporters. This gene encodes one of the two required transporters and the encoded protein accounts for tissue-specific uptake of vitamin C. Previously, this gene had an official symbol of SLC23A1. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for disruptions in this gene die within minutes of birth from respiratory distress. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 51 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adamdec1 |
T |
A |
14: 68,808,802 (GRCm39) |
H302L |
probably damaging |
Het |
| Adamts12 |
T |
A |
15: 11,263,422 (GRCm39) |
C595S |
probably damaging |
Het |
| Arid2 |
G |
A |
15: 96,268,154 (GRCm39) |
V756I |
probably damaging |
Het |
| Asah1 |
A |
T |
8: 41,813,336 (GRCm39) |
W26R |
possibly damaging |
Het |
| Brinp1 |
C |
T |
4: 68,822,973 (GRCm39) |
|
probably null |
Het |
| Cers2 |
A |
G |
3: 95,228,663 (GRCm39) |
D162G |
probably damaging |
Het |
| Clasp1 |
G |
T |
1: 118,429,053 (GRCm39) |
E106* |
probably null |
Het |
| Col12a1 |
T |
C |
9: 79,588,719 (GRCm39) |
E1132G |
probably damaging |
Het |
| Dhdds |
G |
T |
4: 133,710,182 (GRCm39) |
H196N |
probably benign |
Het |
| Eps8 |
T |
C |
6: 137,504,379 (GRCm39) |
D118G |
probably damaging |
Het |
| Fmo9 |
A |
G |
1: 166,505,220 (GRCm39) |
S7P |
probably damaging |
Het |
| Gamt |
A |
G |
10: 80,094,272 (GRCm39) |
L197P |
probably damaging |
Het |
| Grb7 |
A |
G |
11: 98,341,945 (GRCm39) |
I82V |
probably damaging |
Het |
| Hectd2 |
T |
C |
19: 36,577,121 (GRCm39) |
|
probably null |
Het |
| Ilk |
T |
C |
7: 105,389,542 (GRCm39) |
V83A |
probably damaging |
Het |
| Kif21a |
T |
A |
15: 90,869,598 (GRCm39) |
I418F |
probably damaging |
Het |
| Kndc1 |
A |
G |
7: 139,501,425 (GRCm39) |
I905V |
probably benign |
Het |
| Lyl1 |
C |
T |
8: 85,429,300 (GRCm39) |
P3L |
possibly damaging |
Het |
| Morc3 |
T |
C |
16: 93,667,971 (GRCm39) |
I710T |
probably damaging |
Het |
| Nefm |
T |
C |
14: 68,357,728 (GRCm39) |
|
probably benign |
Het |
| Or10d5 |
T |
C |
9: 39,862,040 (GRCm39) |
E9G |
probably damaging |
Het |
| Or2f2 |
A |
G |
6: 42,767,599 (GRCm39) |
T209A |
probably benign |
Het |
| Or8g23 |
C |
A |
9: 38,971,259 (GRCm39) |
R234S |
probably damaging |
Het |
| Pard6g |
T |
G |
18: 80,123,068 (GRCm39) |
L34W |
probably damaging |
Het |
| Patj |
C |
T |
4: 98,332,040 (GRCm39) |
S562L |
probably damaging |
Het |
| Pcsk4 |
A |
G |
10: 80,164,883 (GRCm39) |
I61T |
probably damaging |
Het |
| Pcsk7 |
T |
A |
9: 45,825,670 (GRCm39) |
H300Q |
probably damaging |
Het |
| Pip5kl1 |
A |
G |
2: 32,470,033 (GRCm39) |
D288G |
probably damaging |
Het |
| Plxnb2 |
T |
A |
15: 89,046,641 (GRCm39) |
|
probably benign |
Het |
| Poldip2 |
T |
C |
11: 78,411,970 (GRCm39) |
|
probably benign |
Het |
| Ralgapa2 |
T |
C |
2: 146,266,734 (GRCm39) |
Y614C |
probably damaging |
Het |
| Rarres1 |
C |
A |
3: 67,403,145 (GRCm39) |
|
probably null |
Het |
| Samd3 |
C |
T |
10: 26,147,606 (GRCm39) |
T427M |
probably damaging |
Het |
| Skap1 |
A |
G |
11: 96,593,446 (GRCm39) |
I98V |
probably benign |
Het |
| Skint11 |
T |
C |
4: 114,101,820 (GRCm39) |
S87P |
probably damaging |
Het |
| Slc22a22 |
T |
G |
15: 57,126,670 (GRCm39) |
E133A |
probably damaging |
Het |
| Slc6a20b |
T |
A |
9: 123,426,403 (GRCm39) |
E494V |
possibly damaging |
Het |
| Slco1a4 |
A |
T |
6: 141,765,329 (GRCm39) |
D304E |
probably benign |
Het |
| Slco1a4 |
A |
C |
6: 141,763,585 (GRCm39) |
M377R |
probably damaging |
Het |
| Srpk2 |
T |
C |
5: 23,729,616 (GRCm39) |
|
probably null |
Het |
| Supt3 |
T |
G |
17: 45,352,114 (GRCm39) |
C271W |
probably damaging |
Het |
| Taar7d |
C |
A |
10: 23,903,539 (GRCm39) |
F140L |
probably benign |
Het |
| Tmbim7 |
T |
C |
5: 3,729,158 (GRCm39) |
*225Q |
probably null |
Het |
| Tpst1 |
T |
C |
5: 130,130,752 (GRCm39) |
I74T |
probably damaging |
Het |
| Utp3 |
T |
C |
5: 88,703,179 (GRCm39) |
V236A |
possibly damaging |
Het |
| Vmn2r55 |
A |
T |
7: 12,404,558 (GRCm39) |
F282I |
probably damaging |
Het |
| Vwa5b1 |
A |
T |
4: 138,327,460 (GRCm39) |
I372N |
possibly damaging |
Het |
| Wtip |
C |
T |
7: 33,824,958 (GRCm39) |
A209T |
probably damaging |
Het |
| Zbbx |
T |
C |
3: 74,985,867 (GRCm39) |
D395G |
probably benign |
Het |
| Zfp273 |
A |
T |
13: 67,973,769 (GRCm39) |
H299L |
probably damaging |
Het |
| Zfp459 |
G |
A |
13: 67,556,796 (GRCm39) |
R96* |
probably null |
Het |
|
| Other mutations in Slc23a2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00763:Slc23a2
|
APN |
2 |
131,943,420 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL01123:Slc23a2
|
APN |
2 |
131,898,736 (GRCm39) |
missense |
probably benign |
0.02 |
|
R0352:Slc23a2
|
UTSW |
2 |
131,902,716 (GRCm39) |
missense |
probably benign |
0.03 |
|
R0446:Slc23a2
|
UTSW |
2 |
131,920,353 (GRCm39) |
missense |
probably benign |
0.06 |
|
R0499:Slc23a2
|
UTSW |
2 |
131,913,937 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1252:Slc23a2
|
UTSW |
2 |
131,904,117 (GRCm39) |
splice site |
probably null |
|
|
R1663:Slc23a2
|
UTSW |
2 |
131,907,384 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1768:Slc23a2
|
UTSW |
2 |
131,917,561 (GRCm39) |
missense |
probably benign |
|
|
R1914:Slc23a2
|
UTSW |
2 |
131,898,686 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R2277:Slc23a2
|
UTSW |
2 |
131,933,179 (GRCm39) |
missense |
possibly damaging |
0.54 |
|
R2326:Slc23a2
|
UTSW |
2 |
131,936,115 (GRCm39) |
missense |
possibly damaging |
0.72 |
|
R2385:Slc23a2
|
UTSW |
2 |
131,931,121 (GRCm39) |
missense |
probably benign |
0.01 |
|
R4049:Slc23a2
|
UTSW |
2 |
131,902,603 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4084:Slc23a2
|
UTSW |
2 |
131,933,137 (GRCm39) |
nonsense |
probably null |
|
|
R4497:Slc23a2
|
UTSW |
2 |
131,898,702 (GRCm39) |
nonsense |
probably null |
|
|
R4710:Slc23a2
|
UTSW |
2 |
131,898,629 (GRCm39) |
missense |
probably benign |
|
|
R4873:Slc23a2
|
UTSW |
2 |
131,898,800 (GRCm39) |
missense |
possibly damaging |
0.75 |
|
R4875:Slc23a2
|
UTSW |
2 |
131,898,800 (GRCm39) |
missense |
possibly damaging |
0.75 |
|
R5008:Slc23a2
|
UTSW |
2 |
131,943,414 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5164:Slc23a2
|
UTSW |
2 |
131,917,370 (GRCm39) |
intron |
probably benign |
|
|
R5236:Slc23a2
|
UTSW |
2 |
131,917,504 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R6587:Slc23a2
|
UTSW |
2 |
131,920,401 (GRCm39) |
missense |
possibly damaging |
0.70 |
|
R6738:Slc23a2
|
UTSW |
2 |
131,920,356 (GRCm39) |
missense |
probably benign |
0.10 |
|
R6960:Slc23a2
|
UTSW |
2 |
131,933,173 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7000:Slc23a2
|
UTSW |
2 |
131,936,123 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R7062:Slc23a2
|
UTSW |
2 |
131,933,189 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7293:Slc23a2
|
UTSW |
2 |
131,931,026 (GRCm39) |
missense |
probably benign |
0.02 |
|
R7324:Slc23a2
|
UTSW |
2 |
131,931,043 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8077:Slc23a2
|
UTSW |
2 |
131,931,092 (GRCm39) |
missense |
possibly damaging |
0.51 |
|
R8794:Slc23a2
|
UTSW |
2 |
131,902,629 (GRCm39) |
missense |
probably benign |
0.01 |
|
R8839:Slc23a2
|
UTSW |
2 |
131,943,392 (GRCm39) |
splice site |
silent |
|
|
R8882:Slc23a2
|
UTSW |
2 |
131,933,159 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
R9129:Slc23a2
|
UTSW |
2 |
131,920,332 (GRCm39) |
critical splice donor site |
probably null |
|
|
R9252:Slc23a2
|
UTSW |
2 |
131,913,842 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9597:Slc23a2
|
UTSW |
2 |
131,904,098 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9728:Slc23a2
|
UTSW |
2 |
131,900,130 (GRCm39) |
missense |
probably damaging |
1.00 |
|
X0011:Slc23a2
|
UTSW |
2 |
131,933,183 (GRCm39) |
missense |
possibly damaging |
0.64 |
|
X0018:Slc23a2
|
UTSW |
2 |
131,908,726 (GRCm39) |
missense |
probably benign |
0.30 |
|
Z1176:Slc23a2
|
UTSW |
2 |
131,902,708 (GRCm39) |
missense |
probably damaging |
0.98 |
|
| Posted On |
2016-08-02 |
Incidental Mutation