Incidental Mutation 'IGL03351:Nipsnap3a'
ID 419691
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Nipsnap3a
Ensembl Gene ENSMUSG00000015242
Gene Name nipsnap homolog 3A
Synonyms 1700054F22Rik
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # IGL03351
Quality Score
Status
Chromosome 4
Chromosomal Location 52989284-53000854 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 52994134 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Alanine at position 74 (T74A)
Ref Sequence ENSEMBL: ENSMUSP00000103293 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000015386] [ENSMUST00000107666] [ENSMUST00000188045]
AlphaFold B1AWZ3
Predicted Effect probably benign
Transcript: ENSMUST00000015386
AA Change: T72A

PolyPhen 2 Score 0.052 (Sensitivity: 0.94; Specificity: 0.83)
SMART Domains Protein: ENSMUSP00000015386
Gene: ENSMUSG00000015242
AA Change: T72A

DomainStartEndE-ValueType
Pfam:NIPSNAP 35 134 8e-28 PFAM
Pfam:NIPSNAP 144 243 2e-27 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000107666
AA Change: T74A

PolyPhen 2 Score 0.192 (Sensitivity: 0.92; Specificity: 0.87)
SMART Domains Protein: ENSMUSP00000103293
Gene: ENSMUSG00000015242
AA Change: T74A

DomainStartEndE-ValueType
Pfam:NIPSNAP 37 136 1.9e-30 PFAM
Pfam:NIPSNAP 146 245 6.7e-24 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000188045
AA Change: T72A

PolyPhen 2 Score 0.052 (Sensitivity: 0.94; Specificity: 0.83)
SMART Domains Protein: ENSMUSP00000140727
Gene: ENSMUSG00000015242
AA Change: T72A

DomainStartEndE-ValueType
Pfam:NIPSNAP 35 134 8e-28 PFAM
Pfam:NIPSNAP 144 243 2e-27 PFAM
Coding Region Coverage
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 47 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4932414N04Rik T A 2: 68,561,427 (GRCm39) D251E probably benign Het
5730460C07Rik C T 3: 153,495,595 (GRCm39) noncoding transcript Het
Coch G A 12: 51,649,989 (GRCm39) R326Q probably benign Het
Cpa3 A G 3: 20,270,126 (GRCm39) V366A probably benign Het
Csf1r C T 18: 61,250,180 (GRCm39) Q382* probably null Het
Csta1 C A 16: 35,951,411 (GRCm39) G4* probably null Het
Cts7 T C 13: 61,504,417 (GRCm39) R49G probably damaging Het
Dlg5 A G 14: 24,220,522 (GRCm39) V575A probably benign Het
Ero1a G T 14: 45,531,990 (GRCm39) N227K probably benign Het
Faap24 G T 7: 35,094,734 (GRCm39) C58* probably null Het
Hfm1 G A 5: 107,059,441 (GRCm39) Q194* probably null Het
Hs3st5 T A 10: 36,709,319 (GRCm39) Y285N probably damaging Het
Hyal6 G A 6: 24,743,428 (GRCm39) G375R probably damaging Het
Itgb5 T C 16: 33,730,922 (GRCm39) S93P probably benign Het
Kcnj6 A T 16: 94,633,442 (GRCm39) M205K probably damaging Het
Kdm6a C T X: 18,113,343 (GRCm39) Q92* probably null Het
Klhl38 A G 15: 58,186,726 (GRCm39) M1T probably null Het
Krtap7-1 T C 16: 89,304,884 (GRCm39) probably benign Het
L1cam T C X: 72,906,634 (GRCm39) T270A probably damaging Het
Lmod2 A G 6: 24,598,015 (GRCm39) N45S probably benign Het
Magea13 G A X: 57,964,297 (GRCm39) V19I probably benign Het
Mmp2 A G 8: 93,565,970 (GRCm39) I424V probably benign Het
Myh8 A G 11: 67,194,739 (GRCm39) Q1650R possibly damaging Het
Naalad2 T A 9: 18,275,483 (GRCm39) E313V possibly damaging Het
Npr2 G T 4: 43,640,652 (GRCm39) M368I probably benign Het
Nup58 T C 14: 60,466,224 (GRCm39) T445A probably benign Het
Or14a256 A G 7: 86,264,885 (GRCm39) Y323H possibly damaging Het
Or52r1b A G 7: 102,691,337 (GRCm39) D212G probably damaging Het
Pkp3 A G 7: 140,662,606 (GRCm39) T73A probably benign Het
Pole A G 5: 110,449,864 (GRCm39) probably benign Het
Ppp2r3d C T 9: 101,088,391 (GRCm39) G644D probably benign Het
Pramel23 G A 4: 143,423,658 (GRCm39) T377I possibly damaging Het
Ptprb T C 10: 116,175,487 (GRCm39) Y1161H probably benign Het
Ptprs T A 17: 56,744,943 (GRCm39) K264N probably damaging Het
Rasal2 T C 1: 157,020,311 (GRCm39) probably benign Het
Serpina6 A T 12: 103,613,172 (GRCm39) I376N probably damaging Het
Setx T G 2: 29,051,811 (GRCm39) I2062M probably benign Het
Slc9c1 A G 16: 45,363,531 (GRCm39) D99G probably benign Het
Spata31h1 T C 10: 82,119,401 (GRCm39) probably benign Het
Taok1 A G 11: 77,451,154 (GRCm39) Y309H probably damaging Het
Trappc10 T C 10: 78,024,595 (GRCm39) D1178G probably damaging Het
Trav5-1 G A 14: 52,860,302 (GRCm39) E36K probably damaging Het
Vmn1r237 T C 17: 21,535,099 (GRCm39) V274A probably benign Het
Vmn1r29 A T 6: 58,284,735 (GRCm39) S152C probably damaging Het
Washc5 C A 15: 59,235,199 (GRCm39) probably benign Het
Zfp369 T G 13: 65,443,967 (GRCm39) L370R possibly damaging Het
Zfp750 T C 11: 121,404,173 (GRCm39) Y234C probably damaging Het
Other mutations in Nipsnap3a
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL03277:Nipsnap3a APN 4 52,997,219 (GRCm39) missense probably benign 0.23
R0284:Nipsnap3a UTSW 4 52,997,178 (GRCm39) missense probably benign 0.19
R0347:Nipsnap3a UTSW 4 52,997,155 (GRCm39) splice site probably benign
R0433:Nipsnap3a UTSW 4 53,000,316 (GRCm39) missense probably damaging 1.00
R1691:Nipsnap3a UTSW 4 52,994,185 (GRCm39) missense probably null 0.35
R4222:Nipsnap3a UTSW 4 52,997,251 (GRCm39) missense probably benign 0.00
R4223:Nipsnap3a UTSW 4 52,997,251 (GRCm39) missense probably benign 0.00
R4356:Nipsnap3a UTSW 4 52,995,979 (GRCm39) critical splice donor site probably null
R7039:Nipsnap3a UTSW 4 53,000,130 (GRCm39) missense probably damaging 1.00
R7138:Nipsnap3a UTSW 4 52,993,978 (GRCm39) missense probably benign 0.01
R7436:Nipsnap3a UTSW 4 52,994,159 (GRCm39) missense probably damaging 1.00
R7453:Nipsnap3a UTSW 4 52,995,882 (GRCm39) missense probably benign 0.00
R7817:Nipsnap3a UTSW 4 52,997,279 (GRCm39) missense probably damaging 1.00
R9502:Nipsnap3a UTSW 4 52,994,039 (GRCm39) missense probably benign 0.44
Z1176:Nipsnap3a UTSW 4 52,997,216 (GRCm39) nonsense probably null
Posted On 2016-08-02