Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL03365:Clip1'

420051

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Clip1

Ensembl Gene

ENSMUSG00000049550

Gene Name

CAP-GLY domain containing linker protein 1

Synonyms

Clip50, 4631429H07Rik, CLIP-170, restin, Rsn, Clip 170, 1110007I12Rik, cytoplasmic linker protein 50

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

IGL03365

Quality Score

Status

Chromosome

Chromosomal Location

123577795-123684618 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 123583586 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Serine to Alanine at position 1111 (S1111A)

Ref Sequence

ENSEMBL: ENSMUSP00000107190 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000031382] [ENSMUST00000063905] [ENSMUST00000111561] [ENSMUST00000111564] [ENSMUST00000111566]

AlphaFold

Q922J3

PDB Structure

Solution structure of the 1st CAP-Gly domain in mouse CLIP-170/restin [SOLUTION NMR]

Predicted Effect

probably damaging
Transcript: ENSMUST00000031382
AA Change: S1233A

PolyPhen 2 Score 0.995 (Sensitivity: 0.68; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000031382
Gene: ENSMUSG00000049550
AA Change: S1233A

Domain	Start	End	E-Value	Type
internal_repeat_2	11	53	2.28e-5	PROSPERO
CAP_GLY	60	125	1.05e-31	SMART
internal_repeat_2	140	177	2.28e-5	PROSPERO
CAP_GLY	213	278	4.69e-34	SMART
low complexity region	286	304	N/A	INTRINSIC
low complexity region	305	331	N/A	INTRINSIC
coiled coil region	349	451	N/A	INTRINSIC
coiled coil region	474	535	N/A	INTRINSIC
coiled coil region	581	620	N/A	INTRINSIC
coiled coil region	652	1352	N/A	INTRINSIC
low complexity region	1362	1373	N/A	INTRINSIC
Pfam:CLIP1_ZNF	1375	1392	5.8e-9	PFAM
ZnF_C2HC	1417	1433	1.45e0	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000063905
AA Change: S1114A

PolyPhen 2 Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000068241
Gene: ENSMUSG00000049550
AA Change: S1114A

Domain	Start	End	E-Value	Type
internal_repeat_2	11	53	3.3e-5	PROSPERO
CAP_GLY	60	125	1.05e-31	SMART
internal_repeat_2	140	177	3.3e-5	PROSPERO
CAP_GLY	213	278	4.69e-34	SMART
low complexity region	286	304	N/A	INTRINSIC
low complexity region	305	331	N/A	INTRINSIC
coiled coil region	349	524	N/A	INTRINSIC
coiled coil region	570	609	N/A	INTRINSIC
coiled coil region	641	1075	N/A	INTRINSIC
coiled coil region	1115	1235	N/A	INTRINSIC
low complexity region	1245	1256	N/A	INTRINSIC
ZnF_C2HC	1300	1316	1.45e0	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000111561
AA Change: S1222A

PolyPhen 2 Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000107186
Gene: ENSMUSG00000049550
AA Change: S1222A

Domain	Start	End	E-Value	Type
internal_repeat_2	11	53	1.93e-5	PROSPERO
CAP_GLY	60	125	1.05e-31	SMART
internal_repeat_2	140	177	1.93e-5	PROSPERO
CAP_GLY	213	278	4.69e-34	SMART
low complexity region	286	304	N/A	INTRINSIC
low complexity region	305	331	N/A	INTRINSIC
coiled coil region	349	524	N/A	INTRINSIC
coiled coil region	570	609	N/A	INTRINSIC
coiled coil region	641	1341	N/A	INTRINSIC
low complexity region	1351	1362	N/A	INTRINSIC
ZnF_C2HC	1406	1422	1.45e0	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000111564
AA Change: S1111A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000107190
Gene: ENSMUSG00000049550
AA Change: S1111A

Domain	Start	End	E-Value	Type
internal_repeat_2	11	53	2.5e-5	PROSPERO
CAP_GLY	60	125	1.05e-31	SMART
internal_repeat_2	140	177	2.5e-5	PROSPERO
CAP_GLY	213	278	4.69e-34	SMART
low complexity region	286	304	N/A	INTRINSIC
low complexity region	305	331	N/A	INTRINSIC
coiled coil region	349	489	N/A	INTRINSIC
coiled coil region	535	574	N/A	INTRINSIC
coiled coil region	606	1230	N/A	INTRINSIC
low complexity region	1240	1251	N/A	INTRINSIC
ZnF_C2HC	1295	1311	1.45e0	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000111566
AA Change: S1187A

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000107192
Gene: ENSMUSG00000049550
AA Change: S1187A

Domain	Start	End	E-Value	Type
internal_repeat_2	11	53	2e-5	PROSPERO
CAP_GLY	60	125	1.05e-31	SMART
internal_repeat_2	140	177	2e-5	PROSPERO
CAP_GLY	213	278	4.69e-34	SMART
low complexity region	286	304	N/A	INTRINSIC
low complexity region	305	331	N/A	INTRINSIC
coiled coil region	349	489	N/A	INTRINSIC
coiled coil region	535	574	N/A	INTRINSIC
coiled coil region	606	1306	N/A	INTRINSIC
low complexity region	1316	1327	N/A	INTRINSIC
ZnF_C2HC	1371	1387	1.45e0	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000125340

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133545

Predicted Effect

unknown
Transcript: ENSMUST00000137363
AA Change: S859A

SMART Domains

Protein: ENSMUSP00000121425
Gene: ENSMUSG00000049550
AA Change: S859A

Domain	Start	End	E-Value	Type
CAP_GLY	2	31	2.59e0	SMART
low complexity region	39	57	N/A	INTRINSIC
low complexity region	58	84	N/A	INTRINSIC
coiled coil region	101	276	N/A	INTRINSIC
coiled coil region	322	361	N/A	INTRINSIC
coiled coil region	393	980	N/A	INTRINSIC
low complexity region	991	1002	N/A	INTRINSIC
Pfam:CLIP1_ZNF	1004	1021	4.2e-9	PFAM
ZnF_C2HC	1046	1062	1.45e0	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000137602

Predicted Effect

unknown
Transcript: ENSMUST00000154672
AA Change: S1034A

SMART Domains

Protein: ENSMUSP00000122064
Gene: ENSMUSG00000049550
AA Change: S1034A

Domain	Start	End	E-Value	Type
low complexity region	43	59	N/A	INTRINSIC
low complexity region	165	176	N/A	INTRINSIC
internal_repeat_1	352	375	1.56e-8	PROSPERO
internal_repeat_3	358	377	5.32e-6	PROSPERO
internal_repeat_1	450	473	1.56e-8	PROSPERO
internal_repeat_3	544	563	5.32e-6	PROSPERO
internal_repeat_2	553	575	2.88e-7	PROSPERO
low complexity region	735	744	N/A	INTRINSIC
internal_repeat_2	781	803	2.88e-7	PROSPERO
low complexity region	819	830	N/A	INTRINSIC
low complexity region	962	977	N/A	INTRINSIC
low complexity region	1081	1099	N/A	INTRINSIC
low complexity region	1110	1121	N/A	INTRINSIC
low complexity region	1164	1175	N/A	INTRINSIC

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene links endocytic vesicles to microtubules. This gene is highly expressed in Reed-Sternberg cells of Hodgkin disease. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2011]
PHENOTYPE: Mice homozygous for a targeted allele display reduced male fertility and teratozoospermia. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 46 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1500035N22Rik	T	G	5: 24,997,811 (GRCm38)		probably benign	Het
5830411N06Rik	T	A	7: 140,296,769 (GRCm38)	V691E	probably damaging	Het
Adam6a	T	A	12: 113,544,145 (GRCm38)	I46N	possibly damaging	Het
Adipor1	A	G	1: 134,431,642 (GRCm38)	D371G	possibly damaging	Het
Akr1c21	C	T	13: 4,583,852 (GRCm38)	P307S	probably benign	Het
Asxl1	T	A	2: 153,401,754 (GRCm38)	I1408N	probably damaging	Het
Avil	T	C	10: 127,010,983 (GRCm38)	V472A	probably damaging	Het
Bpifa6	C	A	2: 153,989,284 (GRCm38)	Q257K	possibly damaging	Het
Cacna2d4	G	T	6: 119,271,264 (GRCm38)	V380L	probably benign	Het
Dennd4c	A	G	4: 86,807,426 (GRCm38)		probably null	Het
Dock8	C	T	19: 25,099,684 (GRCm38)	P506L	possibly damaging	Het
Ecsit	A	C	9: 22,076,526 (GRCm38)	H72Q	probably damaging	Het
Eif1b	T	A	9: 120,494,120 (GRCm38)	D15E	probably benign	Het
Enpp1	A	G	10: 24,669,025 (GRCm38)	Y319H	probably damaging	Het
Fam126a	A	T	5: 23,983,160 (GRCm38)	Y245N	probably benign	Het
Fat3	T	C	9: 15,996,469 (GRCm38)	N2746D	probably damaging	Het
Fgf20	G	T	8: 40,279,891 (GRCm38)	L115I	possibly damaging	Het
Hip1r	C	T	5: 124,000,167 (GRCm38)	R775W	probably damaging	Het
Lrp12	A	T	15: 39,872,521 (GRCm38)	S672T	probably benign	Het
Morf4l2	A	G	X: 136,733,715 (GRCm38)	Y255H	probably benign	Het
Mri1	A	G	8: 84,251,633 (GRCm38)	V343A	possibly damaging	Het
Mybphl	T	A	3: 108,364,998 (GRCm38)	M1K	probably null	Het
Nelfcd	G	A	2: 174,426,832 (GRCm38)	A559T	possibly damaging	Het
Ofd1	C	A	X: 166,392,516 (GRCm38)	V951F	probably damaging	Het
Olfr1301	G	T	2: 111,754,427 (GRCm38)	M59I	possibly damaging	Het
Olfr550	G	T	7: 102,578,629 (GRCm38)	V45F	probably benign	Het
Olfr784	T	A	10: 129,388,239 (GRCm38)	V202D	possibly damaging	Het
Parp12	G	A	6: 39,102,647 (GRCm38)	R310W	probably damaging	Het
Pcdh11x	T	A	X: 120,516,238 (GRCm38)	D1019E	probably benign	Het
Ppp1r9a	T	A	6: 5,110,993 (GRCm38)		probably benign	Het
Ptprz1	T	A	6: 23,030,582 (GRCm38)		probably benign	Het
Qser1	T	A	2: 104,786,999 (GRCm38)	N1156I	probably damaging	Het
Rgs3	T	A	4: 62,689,675 (GRCm38)	D59E	probably benign	Het
Rims2	T	C	15: 39,476,541 (GRCm38)	F917S	probably damaging	Het
Sap30bp	G	A	11: 115,964,252 (GRCm38)	V263M	possibly damaging	Het
Scfd2	G	T	5: 74,530,935 (GRCm38)	H229N	possibly damaging	Het
Sspo	T	C	6: 48,459,415 (GRCm38)	V1233A	possibly damaging	Het
Stam	T	A	2: 14,146,390 (GRCm38)	Y519*	probably null	Het
Svs1	A	G	6: 48,988,597 (GRCm38)	D513G	probably damaging	Het
Synj2	A	G	17: 6,019,404 (GRCm38)	T602A	probably damaging	Het
Tas2r126	C	T	6: 42,435,457 (GRCm38)	A308V	probably benign	Het
Tm4sf20	T	C	1: 82,768,227 (GRCm38)		probably benign	Het
Ttc23	G	A	7: 67,662,337 (GRCm38)		probably benign	Het
Vmn1r90	T	C	7: 14,561,304 (GRCm38)	I290V	probably damaging	Het
Xirp1	A	C	9: 120,018,539 (GRCm38)	L426W	probably damaging	Het
Zgrf1	T	G	3: 127,598,774 (GRCm38)	F430L	possibly damaging	Het

Other mutations in Clip1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00159:Clip1	APN	5	123,603,654 (GRCm38)	missense	possibly damaging	0.94
IGL01067:Clip1	APN	5	123,630,804 (GRCm38)	missense	probably damaging	0.99
IGL01524:Clip1	APN	5	123,579,379 (GRCm38)	missense	probably damaging	1.00
IGL01632:Clip1	APN	5	123,617,496 (GRCm38)	missense	probably damaging	1.00
IGL01798:Clip1	APN	5	123,583,549 (GRCm38)	missense	probably damaging	1.00
IGL01874:Clip1	APN	5	123,603,666 (GRCm38)	missense	possibly damaging	0.50
IGL01908:Clip1	APN	5	123,623,207 (GRCm38)	splice site	probably benign
IGL02120:Clip1	APN	5	123,647,883 (GRCm38)	missense	probably damaging	1.00
IGL02309:Clip1	APN	5	123,617,700 (GRCm38)	missense	probably damaging	0.99
IGL02555:Clip1	APN	5	123,621,794 (GRCm38)	critical splice donor site	probably null
IGL03027:Clip1	APN	5	123,621,856 (GRCm38)	missense	probably benign	0.43
IGL03336:Clip1	APN	5	123,653,570 (GRCm38)	nonsense	probably null
IGL02802:Clip1	UTSW	5	123,631,123 (GRCm38)	missense	probably damaging	1.00
PIT4812001:Clip1	UTSW	5	123,630,675 (GRCm38)	missense	probably benign	0.08
R0254:Clip1	UTSW	5	123,617,332 (GRCm38)	splice site	probably benign
R0401:Clip1	UTSW	5	123,653,789 (GRCm38)	missense	probably damaging	1.00
R0530:Clip1	UTSW	5	123,640,531 (GRCm38)	missense	probably damaging	1.00
R0744:Clip1	UTSW	5	123,630,721 (GRCm38)	missense	probably benign	0.05
R0833:Clip1	UTSW	5	123,630,721 (GRCm38)	missense	probably benign	0.05
R1116:Clip1	UTSW	5	123,579,491 (GRCm38)	missense	probably damaging	0.99
R1182:Clip1	UTSW	5	123,647,865 (GRCm38)	missense	probably damaging	1.00
R1656:Clip1	UTSW	5	123,630,403 (GRCm38)	missense	possibly damaging	0.61
R1700:Clip1	UTSW	5	123,630,370 (GRCm38)	missense	probably benign
R1889:Clip1	UTSW	5	123,653,496 (GRCm38)	missense	probably damaging	0.99
R1975:Clip1	UTSW	5	123,623,218 (GRCm38)	missense	possibly damaging	0.79
R2406:Clip1	UTSW	5	123,603,660 (GRCm38)	missense	probably damaging	1.00
R3545:Clip1	UTSW	5	123,631,078 (GRCm38)	missense	probably damaging	1.00
R3547:Clip1	UTSW	5	123,631,078 (GRCm38)	missense	probably damaging	1.00
R3548:Clip1	UTSW	5	123,631,078 (GRCm38)	missense	probably damaging	1.00
R3911:Clip1	UTSW	5	123,590,834 (GRCm38)	missense	probably damaging	1.00
R3944:Clip1	UTSW	5	123,617,829 (GRCm38)	unclassified	probably benign
R4660:Clip1	UTSW	5	123,579,374 (GRCm38)	missense	probably damaging	0.98
R4784:Clip1	UTSW	5	123,579,293 (GRCm38)	missense	probably damaging	1.00
R4785:Clip1	UTSW	5	123,579,293 (GRCm38)	missense	probably damaging	1.00
R4824:Clip1	UTSW	5	123,631,023 (GRCm38)	missense	probably damaging	1.00
R4831:Clip1	UTSW	5	123,583,601 (GRCm38)	missense	probably damaging	1.00
R4951:Clip1	UTSW	5	123,630,345 (GRCm38)	missense	probably benign	0.02
R4960:Clip1	UTSW	5	123,654,003 (GRCm38)	nonsense	probably null
R5014:Clip1	UTSW	5	123,617,730 (GRCm38)	missense	probably damaging	0.99
R5116:Clip1	UTSW	5	123,630,707 (GRCm38)	missense	probably benign	0.05
R5212:Clip1	UTSW	5	123,630,681 (GRCm38)	missense	probably benign	0.09
R5238:Clip1	UTSW	5	123,647,883 (GRCm38)	missense	probably damaging	1.00
R5318:Clip1	UTSW	5	123,613,084 (GRCm38)	unclassified	probably benign
R5372:Clip1	UTSW	5	123,630,240 (GRCm38)	missense	probably benign	0.02
R5701:Clip1	UTSW	5	123,613,303 (GRCm38)	unclassified	probably benign
R5734:Clip1	UTSW	5	123,615,154 (GRCm38)	unclassified	probably benign
R5757:Clip1	UTSW	5	123,627,397 (GRCm38)	missense	probably benign	0.21
R6024:Clip1	UTSW	5	123,615,089 (GRCm38)	missense	possibly damaging	0.66
R6160:Clip1	UTSW	5	123,613,541 (GRCm38)	missense	possibly damaging	0.66
R6177:Clip1	UTSW	5	123,613,834 (GRCm38)	unclassified	probably benign
R6183:Clip1	UTSW	5	123,642,604 (GRCm38)	missense	probably damaging	1.00
R6377:Clip1	UTSW	5	123,603,654 (GRCm38)	missense	possibly damaging	0.50
R6436:Clip1	UTSW	5	123,641,785 (GRCm38)	missense	probably damaging	1.00
R6471:Clip1	UTSW	5	123,640,549 (GRCm38)	missense	probably damaging	0.99
R6766:Clip1	UTSW	5	123,614,764 (GRCm38)	unclassified	probably benign
R7015:Clip1	UTSW	5	123,613,612 (GRCm38)	unclassified	probably benign
R7094:Clip1	UTSW	5	123,623,270 (GRCm38)	missense	probably benign	0.02
R7143:Clip1	UTSW	5	123,653,610 (GRCm38)	missense	probably benign
R7222:Clip1	UTSW	5	123,611,841 (GRCm38)	missense	probably damaging	0.99
R7233:Clip1	UTSW	5	123,611,859 (GRCm38)	missense	probably damaging	1.00
R7238:Clip1	UTSW	5	123,613,265 (GRCm38)	missense
R7249:Clip1	UTSW	5	123,603,600 (GRCm38)	missense	probably damaging	1.00
R7283:Clip1	UTSW	5	123,613,794 (GRCm38)	missense
R7295:Clip1	UTSW	5	123,627,356 (GRCm38)	missense	probably benign	0.19
R7447:Clip1	UTSW	5	123,653,633 (GRCm38)	missense	probably benign	0.03
R7458:Clip1	UTSW	5	123,640,546 (GRCm38)	missense	probably damaging	1.00
R7483:Clip1	UTSW	5	123,617,384 (GRCm38)	missense	probably benign	0.00
R7516:Clip1	UTSW	5	123,583,385 (GRCm38)	missense	probably benign	0.00
R7619:Clip1	UTSW	5	123,614,279 (GRCm38)	missense
R7831:Clip1	UTSW	5	123,613,279 (GRCm38)	missense
R7897:Clip1	UTSW	5	123,622,798 (GRCm38)	missense	probably benign
R8155:Clip1	UTSW	5	123,613,636 (GRCm38)	missense
R8157:Clip1	UTSW	5	123,630,719 (GRCm38)	missense	probably benign	0.17
R8232:Clip1	UTSW	5	123,647,918 (GRCm38)	missense	probably benign	0.05
R8396:Clip1	UTSW	5	123,642,564 (GRCm38)	missense	probably damaging	1.00
R8446:Clip1	UTSW	5	123,655,945 (GRCm38)	missense	probably damaging	1.00
R8486:Clip1	UTSW	5	123,614,707 (GRCm38)	unclassified	probably benign
R8511:Clip1	UTSW	5	123,653,906 (GRCm38)	missense	possibly damaging	0.50
R8731:Clip1	UTSW	5	123,614,693 (GRCm38)	missense
R8889:Clip1	UTSW	5	123,579,502 (GRCm38)	missense	probably benign	0.00
R8892:Clip1	UTSW	5	123,579,502 (GRCm38)	missense	probably benign	0.00
R9058:Clip1	UTSW	5	123,614,582 (GRCm38)	missense
R9106:Clip1	UTSW	5	123,615,160 (GRCm38)	missense	probably damaging	0.97
R9212:Clip1	UTSW	5	123,583,336 (GRCm38)	missense	probably damaging	1.00
R9217:Clip1	UTSW	5	123,579,378 (GRCm38)	missense	probably damaging	1.00
R9223:Clip1	UTSW	5	123,646,274 (GRCm38)	missense	probably damaging	1.00
R9325:Clip1	UTSW	5	123,613,123 (GRCm38)	missense
R9752:Clip1	UTSW	5	123,621,946 (GRCm38)	missense	probably damaging	1.00
Z1177:Clip1	UTSW	5	123,617,350 (GRCm38)	missense	probably damaging	0.99

Posted On

2016-08-02