Incidental Mutation 'IGL03366:Pcdhb19'
ID 420082
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Pcdhb19
Ensembl Gene ENSMUSG00000043313
Gene Name protocadherin beta 19
Synonyms Pcdhb11, PcdhbS
Accession Numbers
Essential gene? Probably non essential (E-score: 0.056) question?
Stock # IGL03366
Quality Score
Status
Chromosome 18
Chromosomal Location 37630049-37637181 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 37631665 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Alanine at position 487 (T487A)
Ref Sequence ENSEMBL: ENSMUSP00000053326 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000055949] [ENSMUST00000059571] [ENSMUST00000115661] [ENSMUST00000194544]
AlphaFold Q91Y01
Predicted Effect probably benign
Transcript: ENSMUST00000055949
SMART Domains Protein: ENSMUSP00000052113
Gene: ENSMUSG00000048347

DomainStartEndE-ValueType
signal peptide 1 26 N/A INTRINSIC
Pfam:Cadherin_2 30 112 3.1e-34 PFAM
CA 155 240 7.97e-19 SMART
CA 264 345 6.27e-26 SMART
CA 368 449 2.63e-19 SMART
CA 473 559 7.09e-25 SMART
CA 589 670 2.87e-11 SMART
Pfam:Cadherin_C_2 687 771 7.9e-27 PFAM
Predicted Effect possibly damaging
Transcript: ENSMUST00000059571
AA Change: T487A

PolyPhen 2 Score 0.946 (Sensitivity: 0.80; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000053326
Gene: ENSMUSG00000043313
AA Change: T487A

DomainStartEndE-ValueType
signal peptide 1 26 N/A INTRINSIC
CA 45 131 4.8e-1 SMART
CA 155 240 6.58e-20 SMART
CA 264 345 1.03e-21 SMART
CA 368 449 4.21e-18 SMART
CA 473 559 3.36e-26 SMART
CA 589 670 6.69e-12 SMART
Pfam:Cadherin_C_2 686 769 1.9e-25 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000115661
SMART Domains Protein: ENSMUSP00000111325
Gene: ENSMUSG00000103458

DomainStartEndE-ValueType
CA 20 131 5.3e-2 SMART
CA 155 240 1.51e-19 SMART
CA 264 348 7.6e-25 SMART
CA 372 453 1.42e-24 SMART
CA 477 563 1.42e-24 SMART
CA 594 674 4.12e-12 SMART
low complexity region 706 721 N/A INTRINSIC
Pfam:Cadherin_tail 796 930 3.9e-58 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000193984
Predicted Effect probably benign
Transcript: ENSMUST00000194544
SMART Domains Protein: ENSMUSP00000141847
Gene: ENSMUSG00000102836

DomainStartEndE-ValueType
Blast:CA 18 66 5e-20 BLAST
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the protocadherin beta gene cluster, one of three related gene clusters tandemly linked on chromosome five. The gene clusters demonstrate an unusual genomic organization similar to that of B-cell and T-cell receptor gene clusters. The beta cluster contains 16 genes and 3 pseudogenes, each encoding 6 extracellular cadherin domains and a cytoplasmic tail that deviates from others in the cadherin superfamily. The extracellular domains interact in a homophilic manner to specify differential cell-cell connections. Unlike the alpha and gamma clusters, the transcripts from these genes are made up of only one large exon, not sharing common 3' exons as expected. These neural cadherin-like cell adhesion proteins are integral plasma membrane proteins. Their specific functions are unknown but they most likely play a critical role in the establishment and function of specific cell-cell neural connections. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 43 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Ap2a2 T A 7: 141,209,186 (GRCm39) S793T probably benign Het
Btnl6 T C 17: 34,727,153 (GRCm39) D459G probably damaging Het
Cacna1g C A 11: 94,347,977 (GRCm39) D704Y probably damaging Het
Cby2 A G 14: 75,820,829 (GRCm39) S299P probably benign Het
Cry2 A G 2: 92,244,060 (GRCm39) I371T probably damaging Het
Dock3 A T 9: 106,882,632 (GRCm39) F384I probably benign Het
Dpp4 T C 2: 62,187,301 (GRCm39) probably null Het
Hecw1 G T 13: 14,552,382 (GRCm39) D72E probably damaging Het
Htt T A 5: 35,064,924 (GRCm39) W3046R probably damaging Het
Hydin A T 8: 110,993,995 (GRCm39) N10Y unknown Het
Ighv8-8 T A 12: 115,257,760 (GRCm39) T94S probably benign Het
Igkv4-58 A G 6: 69,477,538 (GRCm39) S20P probably damaging Het
Il4i1 T C 7: 44,486,919 (GRCm39) probably benign Het
Kif13a A T 13: 46,918,099 (GRCm39) S403T probably benign Het
Klhl40 T C 9: 121,612,446 (GRCm39) L616P probably damaging Het
Krt7 T C 15: 101,325,491 (GRCm39) L440P possibly damaging Het
Lpin1 A G 12: 16,594,678 (GRCm39) L755P probably damaging Het
Magee2 C A X: 103,899,134 (GRCm39) E506* probably null Het
Mast3 G A 8: 71,234,207 (GRCm39) R143* probably null Het
Med12 T A X: 100,321,695 (GRCm39) H459Q probably benign Het
Mmp3 T C 9: 7,450,149 (GRCm39) S294P probably benign Het
Muc6 T C 7: 141,234,349 (GRCm39) Y714C probably damaging Het
Myh2 T C 11: 67,074,349 (GRCm39) L662S probably damaging Het
Notch4 G T 17: 34,791,542 (GRCm39) C567F probably damaging Het
Nprl3 A G 11: 32,200,256 (GRCm39) I20T probably damaging Het
Or10ag2 A T 2: 87,248,587 (GRCm39) D65V possibly damaging Het
Phlpp2 A G 8: 110,667,467 (GRCm39) E1332G probably benign Het
Pick1 T C 15: 79,125,481 (GRCm39) S113P probably damaging Het
Ptpru T C 4: 131,507,178 (GRCm39) E1023G probably damaging Het
Rspry1 A C 8: 95,376,962 (GRCm39) I382L probably benign Het
Sf3b3 A C 8: 111,566,586 (GRCm39) V248G probably damaging Het
Smg5 T A 3: 88,253,759 (GRCm39) Y126* probably null Het
Spin1 T C 13: 51,281,973 (GRCm39) V22A probably benign Het
Stab1 C T 14: 30,872,220 (GRCm39) R1189Q possibly damaging Het
Sytl5 A G X: 9,829,939 (GRCm39) D538G probably damaging Het
Taar7e T A 10: 23,913,813 (GRCm39) M101K probably damaging Het
Taf4 A G 2: 179,576,847 (GRCm39) V578A probably damaging Het
Tmem266 G T 9: 55,344,517 (GRCm39) C383F probably benign Het
Trim34a T C 7: 103,910,140 (GRCm39) probably null Het
Vmn2r104 T C 17: 20,249,866 (GRCm39) T802A probably damaging Het
Vmn2r32 A C 7: 7,467,029 (GRCm39) I833S probably damaging Het
Vmn2r85 T C 10: 130,262,328 (GRCm39) D137G probably benign Het
Vps13c C T 9: 67,853,308 (GRCm39) S2467L probably benign Het
Other mutations in Pcdhb19
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01374:Pcdhb19 APN 18 37,631,042 (GRCm39) missense probably damaging 1.00
IGL02070:Pcdhb19 APN 18 37,631,597 (GRCm39) missense probably damaging 1.00
IGL02348:Pcdhb19 APN 18 37,631,861 (GRCm39) missense probably damaging 1.00
IGL02866:Pcdhb19 APN 18 37,632,163 (GRCm39) missense possibly damaging 0.91
IGL02869:Pcdhb19 APN 18 37,631,690 (GRCm39) missense probably damaging 0.98
IGL03118:Pcdhb19 APN 18 37,632,618 (GRCm39) intron probably benign
IGL03120:Pcdhb19 APN 18 37,631,209 (GRCm39) missense probably benign 0.09
IGL03135:Pcdhb19 APN 18 37,631,588 (GRCm39) missense probably benign 0.37
R0147:Pcdhb19 UTSW 18 37,630,235 (GRCm39) missense probably benign 0.01
R0148:Pcdhb19 UTSW 18 37,630,235 (GRCm39) missense probably benign 0.01
R0432:Pcdhb19 UTSW 18 37,632,588 (GRCm39) missense probably benign 0.01
R0609:Pcdhb19 UTSW 18 37,631,005 (GRCm39) missense probably benign
R1438:Pcdhb19 UTSW 18 37,631,015 (GRCm39) missense probably damaging 1.00
R2255:Pcdhb19 UTSW 18 37,630,997 (GRCm39) missense probably benign 0.00
R2265:Pcdhb19 UTSW 18 37,630,736 (GRCm39) missense probably damaging 0.99
R3500:Pcdhb19 UTSW 18 37,630,532 (GRCm39) nonsense probably null
R3708:Pcdhb19 UTSW 18 37,630,442 (GRCm39) missense probably benign 0.04
R4165:Pcdhb19 UTSW 18 37,632,243 (GRCm39) missense probably benign
R4166:Pcdhb19 UTSW 18 37,632,243 (GRCm39) missense probably benign
R4863:Pcdhb19 UTSW 18 37,632,161 (GRCm39) missense probably benign 0.00
R5217:Pcdhb19 UTSW 18 37,630,939 (GRCm39) missense probably benign 0.00
R5770:Pcdhb19 UTSW 18 37,631,090 (GRCm39) missense possibly damaging 0.73
R6031:Pcdhb19 UTSW 18 37,630,776 (GRCm39) missense probably damaging 1.00
R6031:Pcdhb19 UTSW 18 37,630,776 (GRCm39) missense probably damaging 1.00
R6372:Pcdhb19 UTSW 18 37,630,419 (GRCm39) missense probably benign 0.04
R6454:Pcdhb19 UTSW 18 37,632,322 (GRCm39) missense probably benign 0.43
R6985:Pcdhb19 UTSW 18 37,630,211 (GRCm39) missense probably benign 0.00
R7658:Pcdhb19 UTSW 18 37,632,034 (GRCm39) missense probably damaging 0.99
R7662:Pcdhb19 UTSW 18 37,631,788 (GRCm39) missense probably damaging 0.98
R7910:Pcdhb19 UTSW 18 37,630,720 (GRCm39) missense probably benign 0.43
R8041:Pcdhb19 UTSW 18 37,630,367 (GRCm39) missense possibly damaging 0.87
R8318:Pcdhb19 UTSW 18 37,630,999 (GRCm39) missense possibly damaging 0.86
R8989:Pcdhb19 UTSW 18 37,631,476 (GRCm39) missense probably benign 0.04
R9053:Pcdhb19 UTSW 18 37,631,143 (GRCm39) missense probably benign 0.01
R9164:Pcdhb19 UTSW 18 37,631,852 (GRCm39) missense probably damaging 1.00
R9197:Pcdhb19 UTSW 18 37,631,354 (GRCm39) missense probably damaging 1.00
R9309:Pcdhb19 UTSW 18 37,631,858 (GRCm39) missense probably damaging 1.00
R9377:Pcdhb19 UTSW 18 37,632,299 (GRCm39) missense probably damaging 1.00
R9402:Pcdhb19 UTSW 18 37,632,532 (GRCm39) nonsense probably null
R9432:Pcdhb19 UTSW 18 37,630,628 (GRCm39) missense possibly damaging 0.91
R9553:Pcdhb19 UTSW 18 37,631,848 (GRCm39) missense probably damaging 1.00
X0062:Pcdhb19 UTSW 18 37,630,228 (GRCm39) missense probably benign
Z1177:Pcdhb19 UTSW 18 37,631,498 (GRCm39) missense probably damaging 1.00
Posted On 2016-08-02