Incidental Mutation 'IGL03397:Six3'
ID421307
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Six3
Ensembl Gene ENSMUSG00000038805
Gene Namesine oculis-related homeobox 3
SynonymsE130112M24Rik
Accession Numbers
Is this an essential gene? Essential (E-score: 1.000) question?
Stock #IGL03397
Quality Score
Status
Chromosome17
Chromosomal Location85613608-85629302 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) G to T at 85621646 bp
ZygosityHeterozygous
Amino Acid Change Arginine to Leucine at position 136 (R136L)
Ref Sequence ENSEMBL: ENSMUSP00000125169 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000162695] [ENSMUST00000175898] [ENSMUST00000176081]
Predicted Effect noncoding transcript
Transcript: ENSMUST00000159030
Predicted Effect noncoding transcript
Transcript: ENSMUST00000160691
Predicted Effect noncoding transcript
Transcript: ENSMUST00000161146
Predicted Effect noncoding transcript
Transcript: ENSMUST00000161688
Predicted Effect probably damaging
Transcript: ENSMUST00000162695
AA Change: R136L

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)
SMART Domains Protein: ENSMUSP00000125169
Gene: ENSMUSG00000038805
AA Change: R136L

DomainStartEndE-ValueType
low complexity region 30 71 N/A INTRINSIC
HOX 208 269 1.26e-14 SMART
low complexity region 294 310 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000175898
AA Change: R136L

PolyPhen 2 Score 0.980 (Sensitivity: 0.75; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000135677
Gene: ENSMUSG00000038805
AA Change: R136L

DomainStartEndE-ValueType
low complexity region 30 71 N/A INTRINSIC
HOX 208 269 1.26e-14 SMART
low complexity region 294 310 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000175913
Predicted Effect probably damaging
Transcript: ENSMUST00000176081
AA Change: R136L

PolyPhen 2 Score 0.980 (Sensitivity: 0.75; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000135312
Gene: ENSMUSG00000038805
AA Change: R136L

DomainStartEndE-ValueType
low complexity region 51 92 N/A INTRINSIC
Pfam:SIX1_SD 109 223 6e-47 PFAM
HOX 229 290 6.5e-17 SMART
low complexity region 315 331 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000176432
Predicted Effect noncoding transcript
Transcript: ENSMUST00000176556
Predicted Effect noncoding transcript
Transcript: ENSMUST00000176917
Predicted Effect noncoding transcript
Transcript: ENSMUST00000176958
Predicted Effect noncoding transcript
Transcript: ENSMUST00000177220
Predicted Effect noncoding transcript
Transcript: ENSMUST00000188560
Predicted Effect noncoding transcript
Transcript: ENSMUST00000183495
Predicted Effect noncoding transcript
Transcript: ENSMUST00000177487
Predicted Effect noncoding transcript
Transcript: ENSMUST00000184318
Predicted Effect noncoding transcript
Transcript: ENSMUST00000185134
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the sine oculis homeobox transcription factor family. The encoded protein plays a role in eye development. Mutations in this gene have been associated with holoprosencephaly type 2. [provided by RefSeq, Oct 2009]
PHENOTYPE: Mice homozygous for disruptions of this gene die at birth with anterior structures of the head and brain undeveloped. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 30 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930435E12Rik G A 16: 38,828,693 P18L probably damaging Het
Abcc2 A T 19: 43,784,304 Y51F probably benign Het
Ankrd42 G A 7: 92,619,554 L194F probably damaging Het
Ccdc81 G T 7: 89,896,828 T56N probably damaging Het
Cdh10 T C 15: 18,964,028 I92T probably damaging Het
Eif2b4 A G 5: 31,187,653 I550T probably damaging Het
Epb41l3 A G 17: 69,248,692 Y304C probably damaging Het
Gm10244 A G 6: 39,420,806 probably benign Het
Gm5416 A T 16: 36,213,614 I55F probably damaging Het
Hist1h2bm T C 13: 21,722,381 I95T possibly damaging Het
Lrrc74a T C 12: 86,758,538 V378A probably benign Het
Mcm6 C T 1: 128,344,302 D453N probably damaging Het
Mctp2 A G 7: 72,259,277 L96P probably damaging Het
Nlrp5 G A 7: 23,413,334 V139M probably damaging Het
Nrcam T G 12: 44,559,757 S429A probably damaging Het
Olfr235 C A 19: 12,268,502 Q91K probably benign Het
Pdgfrb A T 18: 61,079,681 T886S probably benign Het
Rapgef5 T A 12: 117,748,441 F754L probably damaging Het
Sbf1 T C 15: 89,288,721 K1863R probably damaging Het
Sis T C 3: 72,935,879 T751A probably benign Het
Slc6a12 A G 6: 121,357,045 D280G probably damaging Het
Sox2 A G 3: 34,650,537 D41G probably damaging Het
Stxbp4 A T 11: 90,540,234 L417M probably damaging Het
Tcam1 A G 11: 106,285,386 I313V probably benign Het
Tgm2 T C 2: 158,120,258 Y547C probably damaging Het
Thsd7b A G 1: 129,596,164 R312G probably benign Het
Tmem94 G T 11: 115,787,568 probably benign Het
Usp39 A G 6: 72,336,313 M298T possibly damaging Het
Vmn2r85 C T 10: 130,425,394 C358Y probably damaging Het
Zscan18 A T 7: 12,773,561 S497T probably damaging Het
Other mutations in Six3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL03096:Six3 APN 17 85621937 missense possibly damaging 0.78
FR4304:Six3 UTSW 17 85621368 small insertion probably benign
FR4340:Six3 UTSW 17 85621356 small insertion probably benign
FR4449:Six3 UTSW 17 85621362 small insertion probably benign
FR4548:Six3 UTSW 17 85621363 small insertion probably benign
FR4589:Six3 UTSW 17 85621365 small insertion probably benign
FR4737:Six3 UTSW 17 85621357 small insertion probably benign
FR4737:Six3 UTSW 17 85621358 small insertion probably benign
FR4737:Six3 UTSW 17 85621362 small insertion probably benign
FR4737:Six3 UTSW 17 85621363 small insertion probably benign
FR4737:Six3 UTSW 17 85621365 small insertion probably benign
FR4737:Six3 UTSW 17 85621368 small insertion probably benign
FR4976:Six3 UTSW 17 85621358 small insertion probably benign
FR4976:Six3 UTSW 17 85621371 small insertion probably benign
R0238:Six3 UTSW 17 85621390 missense probably damaging 1.00
R1264:Six3 UTSW 17 85621857 missense probably damaging 0.96
R2903:Six3 UTSW 17 85623855 missense probably damaging 0.96
R2916:Six3 UTSW 17 85621633 missense probably benign 0.25
R4994:Six3 UTSW 17 85621292 missense possibly damaging 0.91
R5393:Six3 UTSW 17 85623842 missense possibly damaging 0.93
R6524:Six3 UTSW 17 85621970 missense probably damaging 1.00
RF003:Six3 UTSW 17 85621370 small insertion probably benign
RF010:Six3 UTSW 17 85621355 small insertion probably benign
RF011:Six3 UTSW 17 85621368 small insertion probably benign
RF012:Six3 UTSW 17 85621368 small insertion probably benign
RF014:Six3 UTSW 17 85621356 small insertion probably benign
RF015:Six3 UTSW 17 85621370 small insertion probably benign
RF022:Six3 UTSW 17 85621356 small insertion probably benign
RF054:Six3 UTSW 17 85621355 small insertion probably benign
Posted On2016-08-02