Mutagenetix > Incidental Mutation

Incidental Mutation 'R5328:Vmn2r78'

422143

Institutional Source

Beutler Lab

Gene Symbol

Vmn2r78

Ensembl Gene

ENSMUSG00000091962

Gene Name

vomeronasal 2, receptor 78

Synonyms

MMRRC Submission

042843-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.091) question?

Stock #

R5328 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

86915300-86955177 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 86921030 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Cysteine at position 252 (Y252C)

Ref Sequence

ENSEMBL: ENSMUSP00000126698 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000170835]

AlphaFold

K7N6U5

Predicted Effect

probably damaging
Transcript: ENSMUST00000170835
AA Change: Y252C

PolyPhen 2 Score 0.980 (Sensitivity: 0.75; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000126698
Gene: ENSMUSG00000091962
AA Change: Y252C

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
Pfam:ANF_receptor	75	464	5.9e-31	PFAM
Pfam:NCD3G	507	559	8.1e-21	PFAM
Pfam:7tm_3	592	827	1e-52	PFAM

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.4%
20x: 95.5%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 86 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb1b	T	A	5: 8,837,694 (GRCm38)	V860E	possibly damaging	Het
Abcc6	T	C	7: 45,992,311 (GRCm38)	D881G	probably benign	Het
Abcc9	A	G	6: 142,682,059 (GRCm38)	V415A	probably benign	Het
Adgrb3	A	C	1: 25,094,275 (GRCm38)	N1003K	possibly damaging	Het
Adora3	C	T	3: 105,907,303 (GRCm38)	T123I	probably benign	Het
Amotl2	A	C	9: 102,723,768 (GRCm38)	T345P	probably benign	Het
Arap3	C	T	18: 37,991,687 (GRCm38)	E247K	possibly damaging	Het
Atp8b1	A	T	18: 64,531,391 (GRCm38)	D1235E	probably benign	Het
Axl	A	T	7: 25,773,411 (GRCm38)	V400E	probably damaging	Het
Brd8	T	A	18: 34,607,981 (GRCm38)	N431Y	probably benign	Het
Cadps	A	T	14: 12,457,790 (GRCm38)	N1025K	probably benign	Het
Cblc	A	T	7: 19,792,580 (GRCm38)	S195T	possibly damaging	Het
Chd2	C	T	7: 73,463,681 (GRCm38)	A1184T	possibly damaging	Het
Chst10	G	A	1: 38,895,962 (GRCm38)		probably benign	Het
Col12a1	T	C	9: 79,620,060 (GRCm38)	K2663E	probably damaging	Het
Cspg4	A	T	9: 56,885,856 (GRCm38)	I292L	probably benign	Het
Cul1	T	C	6: 47,508,317 (GRCm38)	V294A	probably damaging	Het
Cyp2d11	G	A	15: 82,391,771 (GRCm38)	P203L	probably benign	Het
Dnaaf10	C	A	11: 17,222,220 (GRCm38)	P103Q	probably damaging	Het
Dscam	T	C	16: 96,673,678 (GRCm38)	H1228R	probably benign	Het
Eif3l	A	T	15: 79,093,361 (GRCm38)	K534*	probably null	Het
Enpep	T	C	3: 129,280,510 (GRCm38)	E796G	probably benign	Het
Ext1	C	A	15: 53,075,817 (GRCm38)	W612L	probably damaging	Het
Faap100	T	A	11: 120,377,632 (GRCm38)	E105V	possibly damaging	Het
Fam117a	T	A	11: 95,364,170 (GRCm38)		probably null	Het
Fan1	A	T	7: 64,354,469 (GRCm38)	Y750N	probably damaging	Het
Fat4	T	A	3: 38,956,868 (GRCm38)	I2039N	probably damaging	Het
Gabrr2	G	T	4: 33,082,565 (GRCm38)	D106Y	probably damaging	Het
Gak	A	C	5: 108,617,001 (GRCm38)	C145G	possibly damaging	Het
Galnt14	A	T	17: 73,505,459 (GRCm38)	N406K	possibly damaging	Het
Gm10439	T	G	X: 149,636,163 (GRCm38)	*434E	probably null	Het
Gm10837	G	T	14: 122,490,778 (GRCm38)	R22L	unknown	Het
Gm19965	T	A	1: 116,821,418 (GRCm38)	H276Q	possibly damaging	Het
Gm43517	T	C	12: 49,391,156 (GRCm38)		probably benign	Het
Greb1l	A	T	18: 10,553,720 (GRCm38)	I1574F	probably damaging	Het
Gzme	G	A	14: 56,117,767 (GRCm38)	H236Y	probably benign	Het
Heatr5b	G	A	17: 78,826,362 (GRCm38)	T266I	possibly damaging	Het
Hk3	T	C	13: 55,013,493 (GRCm38)	I185V	probably benign	Het
Hnrnpr	A	G	4: 136,339,216 (GRCm38)	E302G	probably benign	Het
Itgal	T	C	7: 127,311,675 (GRCm38)		probably null	Het
Itk	A	G	11: 46,331,876 (GRCm38)	S583P	probably benign	Het
Loxhd1	A	T	18: 77,410,572 (GRCm38)	I1448F	probably damaging	Het
Macf1	GCCCCC	GCCCCCC	4: 123,350,991 (GRCm38)		probably null	Het
Man2a2	A	T	7: 80,368,756 (GRCm38)	F118L	probably benign	Het
Mfsd5	T	A	15: 102,281,012 (GRCm38)	V273E	probably damaging	Het
Nfe2l2	A	G	2: 75,676,856 (GRCm38)	L300P	probably damaging	Het
Nt5c1a	T	G	4: 123,208,993 (GRCm38)	L122R	possibly damaging	Het
Nt5c3b	A	G	11: 100,440,241 (GRCm38)	F42S	probably damaging	Het
Or2av9	C	A	11: 58,490,429 (GRCm38)	A109S	possibly damaging	Het
Or51g2	T	A	7: 102,973,968 (GRCm38)	N8I	possibly damaging	Het
Pabpc1	A	T	15: 36,602,877 (GRCm38)	D204E	probably benign	Het
Panx2	A	G	15: 89,068,095 (GRCm38)	N255S	probably damaging	Het
Pcnt	A	G	10: 76,411,719 (GRCm38)	L993P	probably damaging	Het
Pfas	A	T	11: 68,988,592 (GRCm38)	C1160S	probably damaging	Het
Plekhh3	T	A	11: 101,167,658 (GRCm38)		probably benign	Het
Plod3	T	A	5: 136,989,683 (GRCm38)	N258K	probably damaging	Het
Prr14l	T	C	5: 32,830,021 (GRCm38)	Q710R	probably benign	Het
Rnf216	G	T	5: 143,092,999 (GRCm38)	T65K	possibly damaging	Het
Samd9l	T	C	6: 3,376,739 (GRCm38)	E174G	probably damaging	Het
Septin12	T	A	16: 4,993,993 (GRCm38)	M63L	possibly damaging	Het
Sh3bgrl2	T	A	9: 83,577,456 (GRCm38)	D22E	probably benign	Het
Sirpd	T	C	3: 15,332,174 (GRCm38)	M17V	unknown	Het
Skil	A	G	3: 31,117,569 (GRCm38)	K488R	probably benign	Het
Slamf6	T	A	1: 171,938,095 (GRCm38)	I262K	probably benign	Het
Slc27a3	T	C	3: 90,386,832 (GRCm38)	D470G	probably damaging	Het
Sorbs3	A	T	14: 70,181,174 (GRCm38)	V680E	probably damaging	Het
Sox9	C	T	11: 112,782,658 (GRCm38)	T25I	probably benign	Het
Srsf1	G	T	11: 88,049,993 (GRCm38)		probably benign	Het
Stard9	A	C	2: 120,699,230 (GRCm38)	E1989D	probably damaging	Het
Thumpd2	T	A	17: 81,044,162 (GRCm38)	I277F	possibly damaging	Het
Tinag	C	A	9: 77,005,631 (GRCm38)	G299*	probably null	Het
Tk2	A	T	8: 104,229,299 (GRCm38)		probably null	Het
Tmem44	A	G	16: 30,540,891 (GRCm38)	S210P	possibly damaging	Het
Traf3ip1	C	A	1: 91,520,069 (GRCm38)	P423T	probably damaging	Het
Trmt12	A	G	15: 58,872,855 (GRCm38)	D34G	probably damaging	Het
Ttc39b	A	G	4: 83,261,941 (GRCm38)	Y72H	probably damaging	Het
Ttn	G	A	2: 76,878,411 (GRCm38)		probably benign	Het
Ttyh2	T	A	11: 114,710,068 (GRCm38)	I381N	possibly damaging	Het
Uaca	A	T	9: 60,870,532 (GRCm38)	N734Y	probably benign	Het
Usp34	G	A	11: 23,488,659 (GRCm38)	G3407D	probably benign	Het
Usp34	T	C	11: 23,464,616 (GRCm38)	I2853T	probably benign	Het
Wdr19	G	A	5: 65,244,179 (GRCm38)	C979Y	probably damaging	Het
Yeats2	A	T	16: 20,171,205 (GRCm38)	H277L	probably damaging	Het
Zbtb2	T	C	10: 4,369,267 (GRCm38)	Y253C	possibly damaging	Het
Zfat	C	A	15: 68,179,828 (GRCm38)	G706C	probably damaging	Het
Zfp106	A	T	2: 120,520,417 (GRCm38)	N1584K	possibly damaging	Het

Other mutations in Vmn2r78

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01302:Vmn2r78	APN	7	86,915,361 (GRCm38)	missense	unknown
IGL01473:Vmn2r78	APN	7	86,920,312 (GRCm38)	missense	possibly damaging	0.61
IGL01767:Vmn2r78	APN	7	86,954,435 (GRCm38)	missense	probably benign	0.28
IGL02322:Vmn2r78	APN	7	86,921,479 (GRCm38)	missense	probably damaging	0.96
IGL02537:Vmn2r78	APN	7	86,954,288 (GRCm38)	missense	probably damaging	0.99
IGL03297:Vmn2r78	APN	7	86,920,761 (GRCm38)	nonsense	probably null
ANU74:Vmn2r78	UTSW	7	86,921,065 (GRCm38)	missense	possibly damaging	0.62
R0035:Vmn2r78	UTSW	7	86,920,205 (GRCm38)	missense	probably benign	0.22
R0081:Vmn2r78	UTSW	7	86,923,027 (GRCm38)	missense	probably benign	0.35
R0401:Vmn2r78	UTSW	7	86,921,311 (GRCm38)	missense	probably benign	0.04
R0751:Vmn2r78	UTSW	7	86,954,380 (GRCm38)	missense	possibly damaging	0.77
R1341:Vmn2r78	UTSW	7	86,922,269 (GRCm38)	missense	possibly damaging	0.71
R1386:Vmn2r78	UTSW	7	86,915,407 (GRCm38)	missense	unknown
R1526:Vmn2r78	UTSW	7	86,922,257 (GRCm38)	splice site	probably null
R1712:Vmn2r78	UTSW	7	86,954,924 (GRCm38)	missense	probably damaging	1.00
R1739:Vmn2r78	UTSW	7	86,920,789 (GRCm38)	missense	probably benign
R1812:Vmn2r78	UTSW	7	86,920,787 (GRCm38)	missense	probably benign	0.38
R2011:Vmn2r78	UTSW	7	86,955,079 (GRCm38)	missense	possibly damaging	0.52
R2144:Vmn2r78	UTSW	7	86,954,482 (GRCm38)	missense	probably damaging	1.00
R2197:Vmn2r78	UTSW	7	86,921,327 (GRCm38)	missense	probably damaging	0.96
R2291:Vmn2r78	UTSW	7	86,920,154 (GRCm38)	missense	probably damaging	1.00
R2409:Vmn2r78	UTSW	7	86,920,745 (GRCm38)	splice site	probably benign
R3023:Vmn2r78	UTSW	7	86,954,966 (GRCm38)	missense	probably damaging	1.00
R4486:Vmn2r78	UTSW	7	86,920,751 (GRCm38)	critical splice acceptor site	probably null
R4512:Vmn2r78	UTSW	7	86,920,244 (GRCm38)	missense	probably benign	0.00
R4515:Vmn2r78	UTSW	7	86,954,258 (GRCm38)	missense	probably damaging	0.99
R4544:Vmn2r78	UTSW	7	86,921,191 (GRCm38)	missense	probably benign
R4546:Vmn2r78	UTSW	7	86,954,603 (GRCm38)	missense	probably damaging	1.00
R4872:Vmn2r78	UTSW	7	86,954,708 (GRCm38)	missense	possibly damaging	0.87
R4928:Vmn2r78	UTSW	7	86,954,627 (GRCm38)	missense	probably damaging	1.00
R5101:Vmn2r78	UTSW	7	86,922,355 (GRCm38)	missense	probably damaging	1.00
R5265:Vmn2r78	UTSW	7	86,920,124 (GRCm38)	missense	probably damaging	1.00
R5442:Vmn2r78	UTSW	7	86,920,122 (GRCm38)	missense	possibly damaging	0.95
R5567:Vmn2r78	UTSW	7	86,921,529 (GRCm38)	missense	probably benign	0.17
R5572:Vmn2r78	UTSW	7	86,915,512 (GRCm38)	missense	probably benign	0.01
R5636:Vmn2r78	UTSW	7	86,954,429 (GRCm38)	missense	probably damaging	0.99
R5901:Vmn2r78	UTSW	7	86,954,588 (GRCm38)	missense	probably damaging	1.00
R5977:Vmn2r78	UTSW	7	86,954,907 (GRCm38)	missense	probably benign	0.00
R5977:Vmn2r78	UTSW	7	86,920,333 (GRCm38)	missense	possibly damaging	0.74
R6276:Vmn2r78	UTSW	7	86,921,110 (GRCm38)	missense	probably benign	0.00
R6386:Vmn2r78	UTSW	7	86,922,337 (GRCm38)	nonsense	probably null
R6724:Vmn2r78	UTSW	7	86,954,258 (GRCm38)	missense	probably damaging	0.99
R6852:Vmn2r78	UTSW	7	86,954,603 (GRCm38)	missense	probably damaging	1.00
R6896:Vmn2r78	UTSW	7	86,922,350 (GRCm38)	missense	probably benign	0.10
R7385:Vmn2r78	UTSW	7	86,922,425 (GRCm38)	missense	probably benign	0.18
R7578:Vmn2r78	UTSW	7	86,954,344 (GRCm38)	nonsense	probably null
R7680:Vmn2r78	UTSW	7	86,954,941 (GRCm38)	missense	probably damaging	1.00
R7748:Vmn2r78	UTSW	7	86,921,135 (GRCm38)	missense	probably benign	0.00
R7852:Vmn2r78	UTSW	7	86,920,170 (GRCm38)	nonsense	probably null
R8031:Vmn2r78	UTSW	7	86,954,867 (GRCm38)	missense	probably damaging	1.00
R8070:Vmn2r78	UTSW	7	86,922,487 (GRCm38)	missense	probably benign	0.01
R8085:Vmn2r78	UTSW	7	86,954,790 (GRCm38)	missense	probably benign	0.00
R8163:Vmn2r78	UTSW	7	86,954,452 (GRCm38)	missense	probably damaging	1.00
R8501:Vmn2r78	UTSW	7	86,920,886 (GRCm38)	missense	probably damaging	0.99
R8749:Vmn2r78	UTSW	7	86,954,305 (GRCm38)	missense	possibly damaging	0.81
R9209:Vmn2r78	UTSW	7	86,920,223 (GRCm38)	missense	probably benign	0.08
RF018:Vmn2r78	UTSW	7	86,954,431 (GRCm38)	nonsense	probably null
Z1177:Vmn2r78	UTSW	7	86,954,774 (GRCm38)	missense	probably benign	0.02
Z1177:Vmn2r78	UTSW	7	86,921,207 (GRCm38)	missense	probably benign	0.44

Predicted Primers

PCR Primer
(F):5'- CTCTACCAGATGACTCCCAAGG -3'
(R):5'- TCCATGCAAGGAGTTAAGCATG -3'

Sequencing Primer
(F):5'- ACAAGGCATGGTGTCCCTAG -3'
(R):5'- GCATGAAATCCCTTATCACTGTG -3'

Posted On

2016-08-04