Mutagenetix > Incidental Mutations

Incidental Mutation 'R5329:Gm5150'

422203

Institutional Source

Beutler Lab

Gene Symbol

Gm5150

Ensembl Gene

ENSMUSG00000078780

Gene Name

predicted gene 5150

Synonyms

MMRRC Submission

042911-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.059) question?

Stock #

R5329 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

15946870-16006437 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 15963424 bp

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 228 (T228A)

Ref Sequence

ENSEMBL: ENSMUSP00000141397 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000108347] [ENSMUST00000194367]

Predicted Effect

probably benign
Transcript: ENSMUST00000108347
AA Change: T228A

PolyPhen 2 Score 0.350 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000103984
Gene: ENSMUSG00000078780
AA Change: T228A

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
IG	37	143	8.78e-9	SMART
IG	156	262	7.52e-8	SMART
transmembrane domain	272	294	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000194367
AA Change: T228A

PolyPhen 2 Score 0.350 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000141397
Gene: ENSMUSG00000078780
AA Change: T228A

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
IG	37	143	8.78e-9	SMART
IG	156	262	7.52e-8	SMART
transmembrane domain	272	294	N/A	INTRINSIC

Meta Mutation Damage Score

0.4493

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.5%
20x: 95.9%

Validation Efficiency

98% (61/62)

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A430005L14Rik	G	A	4: 153,959,827	V32I	probably benign	Het
Abcg4	A	T	9: 44,279,545	M19K	probably benign	Het
Acsm1	A	G	7: 119,656,051	T392A	probably benign	Het
Adam19	A	T	11: 46,125,026	I338F	probably damaging	Het
Adamdec1	C	T	14: 68,570,163	M349I	probably damaging	Het
Arhgef11	T	A	3: 87,679,752		probably benign	Het
Bptf	T	C	11: 107,073,295	D1628G	probably benign	Het
Camk2d	C	T	3: 126,597,482	Q15*	probably null	Het
Camk2g	T	G	14: 20,793,931	D12A	possibly damaging	Het
Cgn	T	C	3: 94,779,990	M1V	probably null	Het
Clec16a	G	A	16: 10,731,679	C872Y	probably damaging	Het
Dcbld1	C	A	10: 52,284,257		probably benign	Het
Ear-ps2	G	A	14: 44,047,060		noncoding transcript	Het
Espl1	T	A	15: 102,312,518	L903Q	probably damaging	Het
Gm11639	T	G	11: 104,753,806		probably null	Het
Gm5117	T	A	8: 31,737,882		noncoding transcript	Het
Gm5435	A	T	12: 82,496,476		noncoding transcript	Het
Gpr156	T	A	16: 38,005,448	C676S	probably benign	Het
Gstt3	C	T	10: 75,774,851	E230K	possibly damaging	Het
Jarid2	A	G	13: 44,906,271	I660V	possibly damaging	Het
Kif13a	A	G	13: 46,775,401		probably null	Het
Kntc1	T	A	5: 123,764,191	V299D	probably benign	Het
Lin9	T	A	1: 180,669,198	L351I	probably benign	Het
Lipk	T	A	19: 34,020,213		probably null	Het
Loxhd1	T	C	18: 77,332,682	L334P	probably damaging	Het
Macc1	T	A	12: 119,446,477	Y327N	probably damaging	Het
Man2a2	G	A	7: 80,361,128	S705L	possibly damaging	Het
Mmp1b	T	C	9: 7,384,897	I251V	possibly damaging	Het
Ncam2	A	T	16: 81,434,819	Q57L	probably damaging	Het
Nedd1	T	C	10: 92,686,240	E645G	probably damaging	Het
Nfatc1	A	T	18: 80,708,117	M1K	probably null	Het
Nlrp9b	A	T	7: 20,023,991	R384S	probably damaging	Het
Nrxn3	A	G	12: 89,813,584	H62R	possibly damaging	Het
Olfr1097	A	G	2: 86,890,620	L185S	probably damaging	Het
Olfr1233	T	A	2: 89,339,459	Y281F	probably damaging	Het
Olfr640	T	C	7: 104,021,997	H107R	probably damaging	Het
Olfr753-ps1	T	A	17: 37,170,000	Y216F	probably damaging	Het
Olfr887	A	T	9: 38,085,126	M97L	probably benign	Het
Pdzph1	T	A	17: 58,974,880	I136F	probably damaging	Het
Pigg	T	C	5: 108,314,160	I119T	probably damaging	Het
R3hdm2	A	G	10: 127,458,893	H215R	probably damaging	Het
Sept14	C	T	5: 129,685,914		probably null	Het
Slc9a3	T	C	13: 74,150,960	M166T	possibly damaging	Het
Spock3	A	G	8: 63,345,782	D279G	probably damaging	Het
Suco	T	C	1: 161,833,430	I967V	probably damaging	Het
Tgtp1	A	G	11: 48,987,176	L234P	probably damaging	Het
Tmem176a	A	G	6: 48,842,217	D4G	probably benign	Het
Tmem2	T	C	19: 21,798,329	I312T	probably benign	Het
Ugt1a10	G	A	1: 88,216,254	A199T	probably damaging	Het
Uox	A	G	3: 146,624,545	D152G	probably damaging	Het
Vmn1r35	C	T	6: 66,679,506	W60*	probably null	Het
Vmn2r103	T	C	17: 19,812,171	C736R	probably damaging	Het

Other mutations in Gm5150

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02188:Gm5150	APN	3	15963662	missense	possibly damaging	0.95
IGL02485:Gm5150	APN	3	15990752	missense	probably damaging	1.00
IGL02507:Gm5150	APN	3	15963321	missense	probably damaging	0.97
R1760:Gm5150	UTSW	3	16006304	missense	probably benign	0.00
R2081:Gm5150	UTSW	3	15990945	missense	probably benign	0.29
R3080:Gm5150	UTSW	3	15990921	missense	possibly damaging	0.93
R3149:Gm5150	UTSW	3	16006315	missense	probably damaging	0.99
R5627:Gm5150	UTSW	3	15963400	missense	probably damaging	1.00
R6052:Gm5150	UTSW	3	15990753	missense	probably damaging	1.00
R6455:Gm5150	UTSW	3	15990651	missense	probably damaging	1.00
R6963:Gm5150	UTSW	3	16006391	start gained	probably benign
R7688:Gm5150	UTSW	3	15963583	missense	probably benign	0.07
R7872:Gm5150	UTSW	3	16006321	start codon destroyed	probably null	0.37
R8368:Gm5150	UTSW	3	15990738	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ATTAGGGTCCCTTCTACATGGG -3'
(R):5'- ACTCTGAACTGCACAGTGACATC -3'

Sequencing Primer
(F):5'- GTTGTTCACAGAGTATTGGACAC -3'
(R):5'- TGCACAGTGACATCCCTCATC -3'

Posted On

2016-08-04