Incidental Mutation 'R5329:Vmn1r35'
ID422215
Institutional Source Beutler Lab
Gene Symbol Vmn1r35
Ensembl Gene ENSMUSG00000060699
Gene Namevomeronasal 1 receptor 35
SynonymsV1rc12
MMRRC Submission 042911-MU
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.059) question?
Stock #R5329 (G1)
Quality Score225
Status Validated
Chromosome6
Chromosomal Location66678070-66685906 bp(-) (GRCm38)
Type of Mutationnonsense
DNA Base Change (assembly) C to T at 66679506 bp
ZygosityHeterozygous
Amino Acid Change Tryptophan to Stop codon at position 60 (W60*)
Ref Sequence ENSEMBL: ENSMUSP00000154707 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000071414] [ENSMUST00000227346] [ENSMUST00000227354] [ENSMUST00000227749] [ENSMUST00000227961]
Predicted Effect probably null
Transcript: ENSMUST00000071414
AA Change: W60*
SMART Domains Protein: ENSMUSP00000071362
Gene: ENSMUSG00000060699
AA Change: W60*

DomainStartEndE-ValueType
Pfam:V1R 28 293 1.2e-54 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000227346
Predicted Effect probably null
Transcript: ENSMUST00000227354
AA Change: W60*
Predicted Effect probably null
Transcript: ENSMUST00000227749
AA Change: W60*
Predicted Effect probably benign
Transcript: ENSMUST00000227961
Meta Mutation Damage Score 0.9755 question?
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.7%
  • 10x: 97.5%
  • 20x: 95.9%
Validation Efficiency 98% (61/62)
Allele List at MGI
Other mutations in this stock
Total: 52 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
A430005L14Rik G A 4: 153,959,827 V32I probably benign Het
Abcg4 A T 9: 44,279,545 M19K probably benign Het
Acsm1 A G 7: 119,656,051 T392A probably benign Het
Adam19 A T 11: 46,125,026 I338F probably damaging Het
Adamdec1 C T 14: 68,570,163 M349I probably damaging Het
Arhgef11 T A 3: 87,679,752 probably benign Het
Bptf T C 11: 107,073,295 D1628G probably benign Het
Camk2d C T 3: 126,597,482 Q15* probably null Het
Camk2g T G 14: 20,793,931 D12A possibly damaging Het
Cgn T C 3: 94,779,990 M1V probably null Het
Clec16a G A 16: 10,731,679 C872Y probably damaging Het
Dcbld1 C A 10: 52,284,257 probably benign Het
Ear-ps2 G A 14: 44,047,060 noncoding transcript Het
Espl1 T A 15: 102,312,518 L903Q probably damaging Het
Gm11639 T G 11: 104,753,806 probably null Het
Gm5117 T A 8: 31,737,882 noncoding transcript Het
Gm5150 T C 3: 15,963,424 T228A probably benign Het
Gm5435 A T 12: 82,496,476 noncoding transcript Het
Gpr156 T A 16: 38,005,448 C676S probably benign Het
Gstt3 C T 10: 75,774,851 E230K possibly damaging Het
Jarid2 A G 13: 44,906,271 I660V possibly damaging Het
Kif13a A G 13: 46,775,401 probably null Het
Kntc1 T A 5: 123,764,191 V299D probably benign Het
Lin9 T A 1: 180,669,198 L351I probably benign Het
Lipk T A 19: 34,020,213 probably null Het
Loxhd1 T C 18: 77,332,682 L334P probably damaging Het
Macc1 T A 12: 119,446,477 Y327N probably damaging Het
Man2a2 G A 7: 80,361,128 S705L possibly damaging Het
Mmp1b T C 9: 7,384,897 I251V possibly damaging Het
Ncam2 A T 16: 81,434,819 Q57L probably damaging Het
Nedd1 T C 10: 92,686,240 E645G probably damaging Het
Nfatc1 A T 18: 80,708,117 M1K probably null Het
Nlrp9b A T 7: 20,023,991 R384S probably damaging Het
Nrxn3 A G 12: 89,813,584 H62R possibly damaging Het
Olfr1097 A G 2: 86,890,620 L185S probably damaging Het
Olfr1233 T A 2: 89,339,459 Y281F probably damaging Het
Olfr640 T C 7: 104,021,997 H107R probably damaging Het
Olfr753-ps1 T A 17: 37,170,000 Y216F probably damaging Het
Olfr887 A T 9: 38,085,126 M97L probably benign Het
Pdzph1 T A 17: 58,974,880 I136F probably damaging Het
Pigg T C 5: 108,314,160 I119T probably damaging Het
R3hdm2 A G 10: 127,458,893 H215R probably damaging Het
Sept14 C T 5: 129,685,914 probably null Het
Slc9a3 T C 13: 74,150,960 M166T possibly damaging Het
Spock3 A G 8: 63,345,782 D279G probably damaging Het
Suco T C 1: 161,833,430 I967V probably damaging Het
Tgtp1 A G 11: 48,987,176 L234P probably damaging Het
Tmem176a A G 6: 48,842,217 D4G probably benign Het
Tmem2 T C 19: 21,798,329 I312T probably benign Het
Ugt1a10 G A 1: 88,216,254 A199T probably damaging Het
Uox A G 3: 146,624,545 D152G probably damaging Het
Vmn2r103 T C 17: 19,812,171 C736R probably damaging Het
Other mutations in Vmn1r35
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00962:Vmn1r35 APN 6 66679377 missense possibly damaging 0.90
IGL01417:Vmn1r35 APN 6 66679207 missense probably benign 0.00
IGL01517:Vmn1r35 APN 6 66679450 missense probably benign 0.01
IGL02142:Vmn1r35 APN 6 66679350 missense probably damaging 1.00
IGL02178:Vmn1r35 APN 6 66679102 missense probably damaging 1.00
IGL02383:Vmn1r35 APN 6 66678891 missense probably damaging 1.00
IGL02383:Vmn1r35 APN 6 66678892 missense probably damaging 1.00
IGL02493:Vmn1r35 APN 6 66679479 missense possibly damaging 0.76
R0360:Vmn1r35 UTSW 6 66678843 missense probably damaging 0.99
R0364:Vmn1r35 UTSW 6 66678843 missense probably damaging 0.99
R0599:Vmn1r35 UTSW 6 66679513 missense probably benign 0.06
R1447:Vmn1r35 UTSW 6 66678906 missense probably benign 0.13
R1781:Vmn1r35 UTSW 6 66679566 missense probably benign 0.24
R2096:Vmn1r35 UTSW 6 66678945 missense possibly damaging 0.94
R2937:Vmn1r35 UTSW 6 66678966 missense possibly damaging 0.78
R2938:Vmn1r35 UTSW 6 66678966 missense possibly damaging 0.78
R3937:Vmn1r35 UTSW 6 66679073 missense probably damaging 1.00
R3938:Vmn1r35 UTSW 6 66679073 missense probably damaging 1.00
R4386:Vmn1r35 UTSW 6 66679589 nonsense probably null
R6638:Vmn1r35 UTSW 6 66678864 missense possibly damaging 0.63
R7175:Vmn1r35 UTSW 6 66678922 missense probably benign 0.06
R7448:Vmn1r35 UTSW 6 66679235 start gained probably benign
R7825:Vmn1r35 UTSW 6 66679459 missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- CTCACTCACGTTGGTATAAGCAC -3'
(R):5'- ATGGTTCCTCTATGTGCTTAAGATG -3'

Sequencing Primer
(F):5'- AAGCACCAGTATAGATGATCCTG -3'
(R):5'- CCTCTATGTGCTTAAGATGAATACAC -3'
Posted On2016-08-04