Mutagenetix > Incidental Mutation

Incidental Mutation 'R5341:Pip5k1b'

422362

Institutional Source

Beutler Lab

Gene Symbol

Pip5k1b

Ensembl Gene

ENSMUSG00000024867

Gene Name

phosphatidylinositol-4-phosphate 5-kinase, type 1 beta

Synonyms

Pipk5b

MMRRC Submission

042920-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.104) question?

Stock #

R5341 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

24272158-24533236 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 24281440 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Serine at position 473 (T473S)

Ref Sequence

ENSEMBL: ENSMUSP00000108292 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000025800] [ENSMUST00000112673]

AlphaFold

P70181

Predicted Effect

probably benign
Transcript: ENSMUST00000025800
AA Change: T525S

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000025800
Gene: ENSMUSG00000024867
AA Change: T525S

Domain	Start	End	E-Value	Type
PIPKc	53	396	1.1e-159	SMART
low complexity region	472	484	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000112673
AA Change: T473S

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000108292
Gene: ENSMUSG00000024867
AA Change: T473S

Domain	Start	End	E-Value	Type
PIPKc	53	396	1.1e-159	SMART
low complexity region	420	432	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000134360

Meta Mutation Damage Score

0.0723

Coding Region Coverage

1x: 99.3%
3x: 98.8%
10x: 97.7%
20x: 96.2%

Validation Efficiency

97% (64/66)

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit enhanced passive cutaneous and systemic anaphylaxis. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abtb3	A	G	10: 85,223,236 (GRCm39)	D15G	unknown	Het
Actr5	C	A	2: 158,467,144 (GRCm39)	S28*	probably null	Het
Adcy1	A	C	11: 7,080,375 (GRCm39)	M373L	probably damaging	Het
Adcyap1r1	C	G	6: 55,455,054 (GRCm39)	F111L	probably benign	Het
Arid5b	A	T	10: 68,113,957 (GRCm39)	F27I	possibly damaging	Het
Art5	C	A	7: 101,747,306 (GRCm39)	V158L	probably benign	Het
Bora	T	A	14: 99,305,530 (GRCm39)	Y300N	probably damaging	Het
Cd300a	A	G	11: 114,784,288 (GRCm39)	T99A	probably damaging	Het
Cdon	A	G	9: 35,381,431 (GRCm39)	Y607C	probably damaging	Het
Cenatac	A	G	9: 44,328,406 (GRCm39)		probably null	Het
Cpxm2	T	A	7: 131,756,342 (GRCm39)		probably benign	Het
Cstdc7	A	G	18: 42,306,496 (GRCm39)	D21G	possibly damaging	Het
Dhx8	AGACCGGGACCGGGACCGGGACCGGGAC	AGACCGGGACCGGGACCGGGAC	11: 101,629,016 (GRCm39)		probably benign	Het
Dync2i1	T	C	12: 116,219,534 (GRCm39)	E136G	possibly damaging	Het
Enox1	A	C	14: 77,815,096 (GRCm39)	T85P	possibly damaging	Het
Fanci	T	C	7: 79,055,926 (GRCm39)	L158P	probably damaging	Het
Gbgt1	C	A	2: 28,395,019 (GRCm39)	T219N	probably damaging	Het
Gulo	T	C	14: 66,225,707 (GRCm39)	D373G	probably benign	Het
Hivep2	C	A	10: 14,008,336 (GRCm39)	Q1645K	possibly damaging	Het
Iqce	A	C	5: 140,675,814 (GRCm39)	M114R	possibly damaging	Het
Lmbrd1	A	T	1: 24,785,892 (GRCm39)	K396*	probably null	Het
Lrrk2	A	T	15: 91,657,061 (GRCm39)	D1785V	probably damaging	Het
Matcap1	A	T	8: 106,011,687 (GRCm39)	M226K	probably damaging	Het
Mcmdc2	ATAAAAAAAAAGGAAAAATTACCTT	AT	1: 10,011,142 (GRCm39)		probably null	Het
Mepce	A	G	5: 137,781,522 (GRCm39)	V564A	probably damaging	Het
Mmp17	A	T	5: 129,679,193 (GRCm39)	D364V	possibly damaging	Het
Mrgpre	T	C	7: 143,335,246 (GRCm39)	N86D	probably benign	Het
Ms4a20	T	C	19: 11,087,745 (GRCm39)		probably benign	Het
Or2r11	A	T	6: 42,437,098 (GRCm39)	L285Q	probably damaging	Het
Or4f53	T	A	2: 111,087,982 (GRCm39)	I174K	probably damaging	Het
Pate11	A	T	9: 36,388,357 (GRCm39)	K61*	probably null	Het
Pax5	T	C	4: 44,697,630 (GRCm39)	D35G	probably damaging	Het
Pkd2l2	A	G	18: 34,542,987 (GRCm39)		probably null	Het
Pygo2	C	A	3: 89,340,067 (GRCm39)	P155Q	probably damaging	Het
Rb1cc1	G	T	1: 6,285,266 (GRCm39)		probably benign	Het
Rbpj	A	G	5: 53,799,425 (GRCm39)	E80G	possibly damaging	Het
Sbno1	A	C	5: 124,546,538 (GRCm39)		probably null	Het
Slc1a1	T	A	19: 28,874,968 (GRCm39)	V182E	probably benign	Het
Slc34a3	A	T	2: 25,120,671 (GRCm39)	F419I	probably benign	Het
Snx8	A	G	5: 140,343,886 (GRCm39)	V62A	probably damaging	Het
Sp9	T	C	2: 73,104,858 (GRCm39)	S471P	possibly damaging	Het
Sspo	A	T	6: 48,436,549 (GRCm39)	S1270C	probably damaging	Het
Stk11	A	T	10: 79,962,094 (GRCm39)	T83S	probably benign	Het
Syt13	A	G	2: 92,783,897 (GRCm39)	E389G	probably benign	Het
Taf10	T	C	7: 105,390,139 (GRCm39)		probably benign	Het
Tgm1	A	T	14: 55,937,705 (GRCm39)	S801R	possibly damaging	Het
Thoc2l	A	T	5: 104,665,942 (GRCm39)	T155S	probably damaging	Het
Timeless	T	C	10: 128,083,047 (GRCm39)	F628L	possibly damaging	Het
Tmem171	G	T	13: 98,824,956 (GRCm39)	P225T	probably damaging	Het
Tspan12	A	T	6: 21,835,458 (GRCm39)	C72S	possibly damaging	Het
Txk	T	C	5: 72,853,964 (GRCm39)	T458A	probably benign	Het
Txndc9	A	G	1: 38,026,704 (GRCm39)		probably benign	Het
Uap1	C	A	1: 169,971,000 (GRCm39)	C464F	probably damaging	Het
Ugt2b36	A	T	5: 87,240,087 (GRCm39)	Y99*	probably null	Het
Usp35	T	C	7: 96,975,134 (GRCm39)	Y13C	probably damaging	Het
Vmn1r6	T	G	6: 56,979,789 (GRCm39)	N128K	probably damaging	Het
Vmn2r106	T	A	17: 20,497,788 (GRCm39)	I484L	probably benign	Het
Zdbf2	T	A	1: 63,347,092 (GRCm39)	S1824T	probably benign	Het
Zdhhc4	A	G	5: 143,311,915 (GRCm39)	V19A	probably benign	Het
Zfp955b	C	T	17: 33,524,095 (GRCm39)		probably benign	Het
Zfp97	T	A	17: 17,365,472 (GRCm39)	C324S	probably damaging	Het
Zswim8	G	A	14: 20,766,122 (GRCm39)	D803N	probably damaging	Het

Other mutations in Pip5k1b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02642:Pip5k1b	APN	19	24,323,731 (GRCm39)	missense	probably benign	0.00
R0109:Pip5k1b	UTSW	19	24,356,411 (GRCm39)	missense	probably benign
R0109:Pip5k1b	UTSW	19	24,356,411 (GRCm39)	missense	probably benign
R0726:Pip5k1b	UTSW	19	24,356,256 (GRCm39)	missense	probably damaging	0.99
R1737:Pip5k1b	UTSW	19	24,374,404 (GRCm39)	missense	probably damaging	1.00
R2211:Pip5k1b	UTSW	19	24,356,214 (GRCm39)	missense	probably damaging	1.00
R2280:Pip5k1b	UTSW	19	24,356,311 (GRCm39)	missense	probably damaging	1.00
R2281:Pip5k1b	UTSW	19	24,356,311 (GRCm39)	missense	probably damaging	1.00
R4703:Pip5k1b	UTSW	19	24,332,517 (GRCm39)	missense	probably damaging	1.00
R4953:Pip5k1b	UTSW	19	24,367,799 (GRCm39)	missense	probably damaging	1.00
R5493:Pip5k1b	UTSW	19	24,416,439 (GRCm39)	missense	probably benign
R5514:Pip5k1b	UTSW	19	24,327,505 (GRCm39)	missense	probably damaging	0.99
R5908:Pip5k1b	UTSW	19	24,374,501 (GRCm39)	missense	possibly damaging	0.95
R6083:Pip5k1b	UTSW	19	24,281,399 (GRCm39)	nonsense	probably null
R6219:Pip5k1b	UTSW	19	24,359,187 (GRCm39)	missense	probably damaging	1.00
R7009:Pip5k1b	UTSW	19	24,337,299 (GRCm39)	splice site	probably null
R7097:Pip5k1b	UTSW	19	24,335,424 (GRCm39)	missense	probably damaging	1.00
R7167:Pip5k1b	UTSW	19	24,374,433 (GRCm39)	missense	probably benign
R7682:Pip5k1b	UTSW	19	24,337,343 (GRCm39)	missense	probably damaging	1.00
R7892:Pip5k1b	UTSW	19	24,337,457 (GRCm39)	missense	probably benign	0.01
R8121:Pip5k1b	UTSW	19	24,337,355 (GRCm39)	missense	probably damaging	1.00
R8314:Pip5k1b	UTSW	19	24,332,563 (GRCm39)	missense	probably benign	0.29
R8865:Pip5k1b	UTSW	19	24,374,422 (GRCm39)	missense	probably damaging	1.00
R9020:Pip5k1b	UTSW	19	24,327,585 (GRCm39)	missense	probably benign	0.00
R9283:Pip5k1b	UTSW	19	24,337,376 (GRCm39)	missense	probably damaging	1.00
R9375:Pip5k1b	UTSW	19	24,416,442 (GRCm39)	missense	probably benign	0.02
R9380:Pip5k1b	UTSW	19	24,356,417 (GRCm39)	missense	probably damaging	1.00
R9418:Pip5k1b	UTSW	19	24,327,581 (GRCm39)	missense	probably benign	0.24
R9473:Pip5k1b	UTSW	19	24,335,590 (GRCm39)	missense	probably damaging	1.00
R9549:Pip5k1b	UTSW	19	24,356,413 (GRCm39)	missense	probably damaging	1.00
R9682:Pip5k1b	UTSW	19	24,356,318 (GRCm39)	missense	probably damaging	1.00
R9700:Pip5k1b	UTSW	19	24,281,460 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- TTAGAGACCCCACTGATGCC -3'
(R):5'- ACGGTGACATTTTCAGGATGAC -3'

Sequencing Primer
(F):5'- AGACCCCACTGATGCCATGTG -3'
(R):5'- GGTGACATTTTCAGGATGACTCACC -3'

Posted On

2016-08-04