Incidental Mutation 'R0488:Clec4b1'
ID 42406
Institutional Source Beutler Lab
Gene Symbol Clec4b1
Ensembl Gene ENSMUSG00000030147
Gene Name C-type lectin domain family 4, member b1
Synonyms 1810046I24Rik, 1810046I24Rik, DCARbeta, DCAR, mDcar2
MMRRC Submission 038687-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.050) question?
Stock # R0488 (G1)
Quality Score 225
Status Validated
Chromosome 6
Chromosomal Location 123026921-123048514 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to A at 123048441 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Isoleucine to Asparagine at position 192 (I192N)
Ref Sequence ENSEMBL: ENSMUSP00000077636 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000077228] [ENSMUST00000078559]
AlphaFold Q7TS58
Predicted Effect possibly damaging
Transcript: ENSMUST00000077228
AA Change: I159N

PolyPhen 2 Score 0.893 (Sensitivity: 0.82; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000076466
Gene: ENSMUSG00000030147
AA Change: I159N

DomainStartEndE-ValueType
transmembrane domain 15 37 N/A INTRINSIC
CLECT 45 170 2.95e-31 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000078559
AA Change: I192N

PolyPhen 2 Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000077636
Gene: ENSMUSG00000030147
AA Change: I192N

DomainStartEndE-ValueType
Blast:CLECT 26 71 1e-9 BLAST
CLECT 78 203 2.95e-31 SMART
Meta Mutation Damage Score 0.6467 question?
Coding Region Coverage
  • 1x: 99.7%
  • 3x: 98.9%
  • 10x: 97.0%
  • 20x: 94.2%
Validation Efficiency 100% (54/54)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the C-type lectin/C-type lectin-like domain (CTL/CTLD) superfamily. Members of this family share a common protein fold and have diverse functions, such as cell adhesion, cell-cell signalling, glycoprotein turnover, and roles in inflammation and immune response. The encoded type 2 transmembrane protein may play a role in dendritic cell function. Two transcript variants encoding distinct isoforms have been identified for this gene. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 51 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adam19 T G 11: 46,029,757 (GRCm39) L734R probably damaging Het
Adgrf1 T C 17: 43,621,302 (GRCm39) I513T probably damaging Het
Adgrl2 A G 3: 148,552,541 (GRCm39) V654A probably damaging Het
Agl A T 3: 116,548,611 (GRCm39) Y1249* probably null Het
Ankar T A 1: 72,697,891 (GRCm39) Q996H probably damaging Het
Aqp12 T C 1: 92,936,378 (GRCm39) Y235H probably damaging Het
Arsb T C 13: 94,077,013 (GRCm39) V460A probably benign Het
Baiap3 A G 17: 25,467,444 (GRCm39) probably null Het
Cd44 T C 2: 102,664,564 (GRCm39) probably benign Het
Cplane2 A G 4: 140,941,712 (GRCm39) D14G probably benign Het
Cps1 A C 1: 67,187,967 (GRCm39) probably benign Het
Dab2 T C 15: 6,454,135 (GRCm39) L215S probably damaging Het
E2f4 G A 8: 106,025,171 (GRCm39) V84I probably damaging Het
Edem2 T C 2: 155,558,043 (GRCm39) T197A probably damaging Het
Eno2 T A 6: 124,740,837 (GRCm39) M121L probably benign Het
Ephb1 A G 9: 101,841,207 (GRCm39) V757A probably damaging Het
Etv5 T A 16: 22,231,695 (GRCm39) I106F probably damaging Het
Foxj3 T A 4: 119,477,187 (GRCm39) Y298* probably null Het
Gm12185 A G 11: 48,798,666 (GRCm39) L609S probably damaging Het
Gm5884 T C 6: 128,623,031 (GRCm39) noncoding transcript Het
Havcr1 A G 11: 46,643,398 (GRCm39) Y106C probably damaging Het
Jmjd1c A G 10: 67,076,506 (GRCm39) N2110S probably damaging Het
Kif2b T C 11: 91,467,798 (GRCm39) K162E probably benign Het
Micu2 T C 14: 58,169,699 (GRCm39) Y217C probably benign Het
Mink1 G T 11: 70,488,030 (GRCm39) G32C probably damaging Het
Mnat1 T A 12: 73,217,413 (GRCm39) N96K probably damaging Het
Mpp2 G T 11: 101,952,427 (GRCm39) R349S possibly damaging Het
Mrpl13 T A 15: 55,402,544 (GRCm39) I59F probably benign Het
Mybl2 T C 2: 162,914,534 (GRCm39) probably benign Het
Otogl T C 10: 107,639,466 (GRCm39) E1382G probably benign Het
Pclo A G 5: 14,719,313 (GRCm39) E1150G unknown Het
Pkd1l3 C G 8: 110,350,281 (GRCm39) D375E possibly damaging Het
Pkd1l3 G A 8: 110,350,295 (GRCm39) S380N probably benign Het
Pla2g4a G A 1: 149,747,196 (GRCm39) T322M probably damaging Het
Pramel11 A T 4: 143,621,973 (GRCm39) Y461N probably benign Het
Prpsap2 A G 11: 61,631,826 (GRCm39) I177T possibly damaging Het
Ptprg A T 14: 12,220,653 (GRCm38) D455V probably damaging Het
Ptprt T C 2: 161,395,745 (GRCm39) T1162A probably damaging Het
Rad51ap1 T C 6: 126,911,723 (GRCm39) N55D possibly damaging Het
Rc3h2 T C 2: 37,279,600 (GRCm39) E543G probably damaging Het
Rimklb G A 6: 122,437,934 (GRCm39) T103I probably benign Het
Samd4b T C 7: 28,113,662 (GRCm39) Y101C probably damaging Het
Snrnp40 C G 4: 130,271,836 (GRCm39) probably null Het
Tubgcp5 T A 7: 55,479,086 (GRCm39) S979T probably damaging Het
Vmn2r93 G A 17: 18,546,311 (GRCm39) E728K probably damaging Het
Wdr17 T C 8: 55,146,087 (GRCm39) probably benign Het
Wdr90 T C 17: 26,067,591 (GRCm39) Y1457C probably damaging Het
Wsb1 T C 11: 79,135,326 (GRCm39) D225G probably damaging Het
Xirp2 T C 2: 67,345,165 (GRCm39) S2469P possibly damaging Het
Zeb1 T A 18: 5,772,455 (GRCm39) C915S probably damaging Het
Znfx1 C A 2: 166,884,483 (GRCm39) R923L possibly damaging Het
Other mutations in Clec4b1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02817:Clec4b1 APN 6 123,045,444 (GRCm39) missense possibly damaging 0.83
R0526:Clec4b1 UTSW 6 123,046,729 (GRCm39) critical splice donor site probably null
R0675:Clec4b1 UTSW 6 123,048,405 (GRCm39) missense probably damaging 0.99
R2374:Clec4b1 UTSW 6 123,027,597 (GRCm39) missense probably damaging 1.00
R2504:Clec4b1 UTSW 6 123,042,904 (GRCm39) missense probably damaging 0.98
R3609:Clec4b1 UTSW 6 123,027,591 (GRCm39) missense probably damaging 0.99
R4062:Clec4b1 UTSW 6 123,045,443 (GRCm39) missense probably benign 0.03
R4081:Clec4b1 UTSW 6 123,046,733 (GRCm39) splice site probably null
R4865:Clec4b1 UTSW 6 123,045,428 (GRCm39) missense possibly damaging 0.84
R5172:Clec4b1 UTSW 6 123,048,414 (GRCm39) missense probably benign 0.34
R5204:Clec4b1 UTSW 6 123,048,494 (GRCm39) makesense probably null
R5757:Clec4b1 UTSW 6 123,046,713 (GRCm39) nonsense probably null
R6129:Clec4b1 UTSW 6 123,045,461 (GRCm39) missense possibly damaging 0.50
R7598:Clec4b1 UTSW 6 123,048,427 (GRCm39) nonsense probably null
R8337:Clec4b1 UTSW 6 123,042,922 (GRCm39) missense probably benign 0.08
R8362:Clec4b1 UTSW 6 123,027,602 (GRCm39) missense probably benign 0.00
R8929:Clec4b1 UTSW 6 123,046,728 (GRCm39) critical splice donor site probably null
Z1188:Clec4b1 UTSW 6 123,027,005 (GRCm39) start gained probably benign
Predicted Primers PCR Primer
(F):5'- GGTTGACTGTTCCCTCAAACAAACCC -3'
(R):5'- AACCATTTGCTGCCCACTTAAATTCTG -3'

Sequencing Primer
(F):5'- CTCTCAGATGTGAGCTGCAAG -3'
(R):5'- CCACTTAAATTCTGTGAACAGCTC -3'
Posted On 2013-05-23