Mutagenetix > Incidental Mutation

Incidental Mutation 'R5377:Lrit2'

425641

Institutional Source

Beutler Lab

Gene Symbol

Lrit2

Ensembl Gene

ENSMUSG00000043418

Gene Name

leucine-rich repeat, immunoglobulin-like and transmembrane domains 2

Synonyms

A930010E21Rik, Lrrc22

MMRRC Submission

042845-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.073) question?

Stock #

R5377 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

37067929-37073743 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 37069183 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Proline at position 273 (Q273P)

Ref Sequence

ENSEMBL: ENSMUSP00000056642 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000057176] [ENSMUST00000120052]

AlphaFold

Q6PFC5

Predicted Effect

possibly damaging
Transcript: ENSMUST00000057176
AA Change: Q273P

PolyPhen 2 Score 0.586 (Sensitivity: 0.88; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000056642
Gene: ENSMUSG00000043418
AA Change: Q273P

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
LRRNT	23	59	7.74e-2	SMART
LRR	78	101	9.96e-1	SMART
LRR_TYP	102	125	8.94e-3	SMART
LRR	126	149	2.03e1	SMART
LRR_TYP	150	173	7.67e-2	SMART
LRRCT	200	251	7.12e-7	SMART
IGc2	265	334	2.05e-9	SMART
FN3	362	443	5.94e0	SMART
transmembrane domain	463	485	N/A	INTRINSIC
low complexity region	538	546	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000120052

SMART Domains

Protein: ENSMUSP00000113964
Gene: ENSMUSG00000041044

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
LRRNT	22	63	1.97e-3	SMART
LRR	82	105	1.03e1	SMART
LRR	106	129	3e1	SMART
LRR	130	152	1.12e1	SMART
LRR_TYP	154	177	4.47e-3	SMART
LRRCT	201	253	2.04e-7	SMART
IGc2	267	336	6.55e-8	SMART
FN3	429	506	2.22e0	SMART
transmembrane domain	531	553	N/A	INTRINSIC
low complexity region	581	595	N/A	INTRINSIC
low complexity region	597	608	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000224104

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.4%
20x: 95.5%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A2m	G	T	6: 121,645,253	V372F	probably benign	Het
Adcy10	G	A	1: 165,519,895	C393Y	probably damaging	Het
Adgrg7	A	C	16: 56,730,306	I681S	possibly damaging	Het
Akap8l	T	C	17: 32,321,511		probably benign	Het
Akr1a1	A	T	4: 116,639,895	V156E	probably damaging	Het
Alk	T	G	17: 71,895,739	D1167A	probably damaging	Het
Ankrd11	T	C	8: 122,893,714		probably null	Het
Aspm	T	A	1: 139,457,483	N288K	probably damaging	Het
Aspm	A	G	1: 139,470,395		probably null	Het
Asxl2	G	A	12: 3,474,618		probably null	Het
Atp6v0a1	A	G	11: 101,055,587	H802R	probably damaging	Het
B4galnt1	A	G	10: 127,171,822	T531A	possibly damaging	Het
Ccdc114	C	T	7: 45,942,082	R257*	probably null	Het
Cecr2	A	G	6: 120,756,569	N506D	possibly damaging	Het
Crebrf	T	C	17: 26,759,865	V509A	probably damaging	Het
Cyp4f40	A	T	17: 32,675,616	I413F	probably null	Het
Defb12	C	A	8: 19,114,326		probably null	Het
Dnah2	T	C	11: 69,421,848	E4297G	probably damaging	Het
Dpysl5	A	T	5: 30,791,513	N371Y	probably damaging	Het
Eef1d	G	T	15: 75,903,189	T207N	probably benign	Het
Esrrb	C	T	12: 86,519,009	Q416*	probably null	Het
Exd2	T	C	12: 80,489,448	L284P	probably damaging	Het
Fat3	T	A	9: 16,376,443	I595F	probably benign	Het
Gm9920	A	G	15: 55,108,975		probably benign	Het
Hephl1	T	C	9: 15,069,788	K783E	probably damaging	Het
Irs2	A	G	8: 11,005,277	S1052P	probably benign	Het
Kctd18	T	C	1: 57,963,093	I192V	probably benign	Het
Lama3	A	G	18: 12,453,746	D722G	probably damaging	Het
Lepr	T	C	4: 101,815,019	V1080A	possibly damaging	Het
Lpin1	C	T	12: 16,563,655	G504S	probably damaging	Het
Mgea5	A	T	19: 45,758,022	Y779*	probably null	Het
Mlkl	T	A	8: 111,327,937	E189D	probably benign	Het
Mttp	C	T	3: 138,105,029	R608H	probably benign	Het
Nav2	T	C	7: 49,589,160	V2011A	probably benign	Het
Nos2	A	T	11: 78,957,491	I1075F	probably benign	Het
Npat	A	G	9: 53,550,036		probably null	Het
Nucks1	T	C	1: 131,919,033	F16L	probably damaging	Het
Nus1	T	C	10: 52,429,213	S150P	possibly damaging	Het
Olfr1230	G	T	2: 89,297,162	T36K	probably damaging	Het
Olfr881	A	T	9: 37,992,612	Y40F	probably benign	Het
Pclo	A	G	5: 14,681,353	T3290A	unknown	Het
Pign	A	T	1: 105,657,812	F4Y	probably benign	Het
Rfx4	A	G	10: 84,860,542	N233D	possibly damaging	Het
Rpgrip1	A	T	14: 52,160,195	M1325L	possibly damaging	Het
Rufy4	T	C	1: 74,147,663	C537R	probably damaging	Het
Scaf11	T	A	15: 96,417,120	H1227L	possibly damaging	Het
Sec31b	G	T	19: 44,518,637	P840T	probably damaging	Het
Slc16a9	T	A	10: 70,283,128	L426I	probably damaging	Het
Slc17a2	T	C	13: 23,812,592	S27P	probably damaging	Het
Slc22a30	G	A	19: 8,344,393	Q436*	probably null	Het
Tacc1	A	G	8: 25,182,283	S310P	possibly damaging	Het
Tmem245	G	A	4: 56,947,084	R110C	probably damaging	Het
Trip12	T	C	1: 84,757,431	Y953C	probably damaging	Het
Trpm7	C	A	2: 126,842,855		probably null	Het
Ush2a	G	A	1: 188,912,123	V4561I	probably benign	Het
Vmn1r192	C	T	13: 22,187,631	V140I	probably benign	Het
Vmn2r66	A	T	7: 85,006,818	I330N	probably damaging	Het
Vmn2r99	T	C	17: 19,379,269	V405A	probably damaging	Het
Wdhd1	A	C	14: 47,272,221	V172G	probably benign	Het
Zfhx3	C	T	8: 108,951,185	R2956C	possibly damaging	Het
Zfp446	T	C	7: 12,982,251	L283P	possibly damaging	Het
Zfp82	T	C	7: 30,057,166	K164E	probably damaging	Het

Other mutations in Lrit2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00327:Lrit2	APN	14	37071963	missense	probably benign	0.31
IGL01475:Lrit2	APN	14	37069094	missense	probably damaging	1.00
IGL02080:Lrit2	APN	14	37069074	missense	probably damaging	0.99
IGL02141:Lrit2	APN	14	37068074	unclassified	probably benign
IGL02479:Lrit2	APN	14	37072278	missense	probably damaging	0.99
IGL02715:Lrit2	APN	14	37072548	missense	probably benign	0.00
R0114:Lrit2	UTSW	14	37068045	splice site	probably null
R1344:Lrit2	UTSW	14	37068556	missense	probably benign	0.32
R1529:Lrit2	UTSW	14	37068827	missense	probably benign	0.12
R1641:Lrit2	UTSW	14	37069148	missense	probably benign	0.34
R2105:Lrit2	UTSW	14	37071956	missense	probably damaging	1.00
R4365:Lrit2	UTSW	14	37072119	missense	probably damaging	1.00
R4645:Lrit2	UTSW	14	37072475	missense	probably benign
R5226:Lrit2	UTSW	14	37072353	missense	probably damaging	1.00
R5387:Lrit2	UTSW	14	37072259	missense	probably damaging	1.00
R5840:Lrit2	UTSW	14	37069005	missense	possibly damaging	0.64
R5881:Lrit2	UTSW	14	37072235	missense	probably benign	0.02
R6499:Lrit2	UTSW	14	37068810	missense	probably damaging	0.98
R6863:Lrit2	UTSW	14	37071944	missense	probably damaging	0.99
R7307:Lrit2	UTSW	14	37072199	missense	probably benign	0.00
R7316:Lrit2	UTSW	14	37068858	missense	probably damaging	1.00
R7491:Lrit2	UTSW	14	37068910	missense	possibly damaging	0.83
R7525:Lrit2	UTSW	14	37072493	missense	possibly damaging	0.76
R7640:Lrit2	UTSW	14	37072124	missense	probably damaging	1.00
R8228:Lrit2	UTSW	14	37069191	missense	probably damaging	1.00
R8397:Lrit2	UTSW	14	37069077	missense	probably damaging	0.98
R8815:Lrit2	UTSW	14	37072530	missense	probably benign	0.00
R9099:Lrit2	UTSW	14	37068855	missense	possibly damaging	0.90
R9152:Lrit2	UTSW	14	37072230	missense	probably damaging	1.00
R9193:Lrit2	UTSW	14	37072593	missense	possibly damaging	0.72
R9309:Lrit2	UTSW	14	37071891	missense	probably benign	0.03
R9517:Lrit2	UTSW	14	37072315	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- CGCTGCACAATAATCCTTGGTTG -3'
(R):5'- ATGACAGGCACCGTTTACAC -3'

Sequencing Primer
(F):5'- CACAATAATCCTTGGTTGTGCGAC -3'
(R):5'- CCTCTATATTGAGGCAGAGTCCTAAC -3'

Posted On

2016-08-04