Mutagenetix > Incidental Mutation

Incidental Mutation 'R5378:Cks1b'

425676

Institutional Source

Beutler Lab

Gene Symbol

Cks1b

Ensembl Gene

ENSMUSG00000028044

Gene Name

CDC28 protein kinase 1b

Synonyms

2610005D03Rik, Cks1, 2410005G18Rik

MMRRC Submission

042953-MU

Accession Numbers

Essential gene?

Not available question?

Stock #

R5378 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

89322779-89325598 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 89323608 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tryptophan to Glycine at position 54 (W54G)

Ref Sequence

ENSEMBL: ENSMUSP00000029679 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000029679] [ENSMUST00000039110] [ENSMUST00000050398] [ENSMUST00000107417] [ENSMUST00000107422] [ENSMUST00000107426] [ENSMUST00000107429] [ENSMUST00000128238] [ENSMUST00000154791] [ENSMUST00000129308] [ENSMUST00000191485] [ENSMUST00000125036] [ENSMUST00000183484] [ENSMUST00000162701]

AlphaFold

P61025

Predicted Effect

probably damaging
Transcript: ENSMUST00000029679
AA Change: W54G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000029679
Gene: ENSMUSG00000028044
AA Change: W54G

Domain	Start	End	E-Value	Type
CKS	5	74	4.1e-48	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000039110

SMART Domains

Protein: ENSMUSP00000035361
Gene: ENSMUSG00000042626

Domain	Start	End	E-Value	Type
low complexity region	6	17	N/A	INTRINSIC
PTB	47	211	2.15e-31	SMART
SH2	372	451	1.71e-26	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000050398

SMART Domains

Protein: ENSMUSP00000051366
Gene: ENSMUSG00000042642

Domain	Start	End	E-Value	Type
MoCF_biosynth	19	180	7.52e-24	SMART
Pfam:PAPS_reduct	303	460	5.2e-25	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000107417

SMART Domains

Protein: ENSMUSP00000103040
Gene: ENSMUSG00000042626

Domain	Start	End	E-Value	Type
PTB	2	166	2.15e-31	SMART
SH2	327	406	1.71e-26	SMART

Predicted Effect

unknown
Transcript: ENSMUST00000107422
AA Change: W32G

SMART Domains

Protein: ENSMUSP00000103045
Gene: ENSMUSG00000028044
AA Change: W32G

Domain	Start	End	E-Value	Type
CKS	1	52	3.88e-26	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000107426

SMART Domains

Protein: ENSMUSP00000103049
Gene: ENSMUSG00000042642

Domain	Start	End	E-Value	Type
MoCF_biosynth	19	180	7.52e-24	SMART
Pfam:PAPS_reduct	303	460	4.7e-25	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000107429

SMART Domains

Protein: ENSMUSP00000103052
Gene: ENSMUSG00000042642

Domain	Start	End	E-Value	Type
MoCF_biosynth	19	174	2.06e-21	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000153334

Predicted Effect

probably benign
Transcript: ENSMUST00000128238

SMART Domains

Protein: ENSMUSP00000119293
Gene: ENSMUSG00000042626

Domain	Start	End	E-Value	Type
low complexity region	6	17	N/A	INTRINSIC
Pfam:PID	52	144	7.7e-19	PFAM
Pfam:PID	134	190	7.8e-16	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000154791

SMART Domains

Protein: ENSMUSP00000123635
Gene: ENSMUSG00000042626

Domain	Start	End	E-Value	Type
low complexity region	6	17	N/A	INTRINSIC
Pfam:PID	52	100	5.7e-13	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000129308

SMART Domains

Protein: ENSMUSP00000122252
Gene: ENSMUSG00000042642

Domain	Start	End	E-Value	Type
MoCF_biosynth	19	180	7.52e-24	SMART
Pfam:PAPS_reduct	303	460	4.7e-25	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000191485

SMART Domains

Protein: ENSMUSP00000140336
Gene: ENSMUSG00000042626

Domain	Start	End	E-Value	Type
low complexity region	6	17	N/A	INTRINSIC
PTB	47	211	2.15e-31	SMART
SH2	372	451	1.71e-26	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000125036

SMART Domains

Protein: ENSMUSP00000115509
Gene: ENSMUSG00000042626

Domain	Start	End	E-Value	Type
PTB	1	155	1.5e-21	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000183484

SMART Domains

Protein: ENSMUSP00000138900
Gene: ENSMUSG00000028044

Domain	Start	End	E-Value	Type
Pfam:CKS	5	36	2.4e-8	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000162701

SMART Domains

Protein: ENSMUSP00000125654
Gene: ENSMUSG00000042642

Domain	Start	End	E-Value	Type
MoCF_biosynth	19	99	1.11e0	SMART

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.5%
20x: 96.0%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] CKS1B protein binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. The CKS1B mRNA is found to be expressed in different patterns through the cell cycle in HeLa cells, which reflects a specialized role for the encoded protein. At least two transcript variants have been identified for this gene, and it appears that only one of them encodes a protein. [provided by RefSeq, Sep 2008]
PHENOTYPE: Embryos homozygous for a knock-out allele exhibit a reduced body size that persists through adulthood while heterozygous mice are intermediate in size. Mutant mouse embryonic fibroblasts (MEFs) proliferate poorly and senesce earlier than wild-type MEFs. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 60 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abat	T	A	16: 8,396,141 (GRCm39)	F39L	probably benign	Het
Abca2	T	G	2: 25,336,080 (GRCm39)	L2150R	probably damaging	Het
Apob	T	A	12: 8,061,865 (GRCm39)	V3449D	probably damaging	Het
Arfgef2	T	A	2: 166,715,548 (GRCm39)	V1331D	probably damaging	Het
Bora	A	G	14: 99,305,929 (GRCm39)	N433D	probably damaging	Het
Cand2	G	A	6: 115,778,912 (GRCm39)	A1159T	probably benign	Het
Ccser1	C	T	6: 61,288,650 (GRCm39)	A271V	probably benign	Het
Ccser2	G	A	14: 36,601,391 (GRCm39)	T331I	possibly damaging	Het
Cemip	A	G	7: 83,607,733 (GRCm39)	S758P	probably damaging	Het
Cenpf	C	T	1: 189,385,663 (GRCm39)	V2206I	possibly damaging	Het
Chrnb1	A	T	11: 69,676,007 (GRCm39)	S412T	probably benign	Het
Col5a3	C	T	9: 20,708,872 (GRCm39)	V630M	unknown	Het
Dnajb14	A	G	3: 137,591,139 (GRCm39)	D30G	probably benign	Het
Dpp8	T	C	9: 64,985,296 (GRCm39)	Y785H	probably damaging	Het
Dsel	T	A	1: 111,790,551 (GRCm39)		probably benign	Het
Dzip1	C	T	14: 119,148,805 (GRCm39)	M291I	probably damaging	Het
Esp8	G	A	17: 40,841,033 (GRCm39)	C98Y	unknown	Het
F11	C	A	8: 45,705,180 (GRCm39)	M120I	probably benign	Het
Fsip2	T	C	2: 82,820,185 (GRCm39)	F5306S	possibly damaging	Het
Gm4841	T	C	18: 60,404,113 (GRCm39)		probably null	Het
Gpr180	T	A	14: 118,377,251 (GRCm39)	L84Q	probably benign	Het
Grwd1	A	T	7: 45,479,505 (GRCm39)	D123E	probably benign	Het
Hsfy2	T	C	1: 56,675,827 (GRCm39)	R237G	probably benign	Het
Htr5a	A	G	5: 28,055,993 (GRCm39)	Y328C	probably damaging	Het
Klrb1f	G	A	6: 129,030,794 (GRCm39)	A127T	probably damaging	Het
Mcpt4	A	T	14: 56,299,750 (GRCm39)		probably null	Het
Muc5b	T	C	7: 141,415,940 (GRCm39)	V2962A	unknown	Het
Or52s19	T	A	7: 103,007,652 (GRCm39)	I250F	probably damaging	Het
Or5t15	A	T	2: 86,681,807 (GRCm39)	N78K	probably benign	Het
Otog	A	T	7: 45,904,428 (GRCm39)	T518S	probably damaging	Het
Phgdh	A	T	3: 98,228,639 (GRCm39)		probably null	Het
Pip5kl1	A	T	2: 32,469,106 (GRCm39)	T213S	probably benign	Het
Plekhg2	G	A	7: 28,062,094 (GRCm39)	R594W	probably damaging	Het
Prg4	T	A	1: 150,330,977 (GRCm39)		probably benign	Het
Prpf40a	T	A	2: 53,035,888 (GRCm39)	D621V	probably damaging	Het
Ptgr3	G	A	18: 84,112,803 (GRCm39)	A160T	probably damaging	Het
Ptprz1	A	T	6: 23,007,401 (GRCm39)	I1655F	probably damaging	Het
Rbm28	T	C	6: 29,128,558 (GRCm39)	K55E	probably damaging	Het
Rbm43	A	T	2: 51,815,633 (GRCm39)	V196E	probably damaging	Het
Rufy4	T	C	1: 74,186,822 (GRCm39)	C537R	probably damaging	Het
Serinc4	T	A	2: 121,282,861 (GRCm39)	M434L	possibly damaging	Het
Slc22a30	G	A	19: 8,321,757 (GRCm39)	Q436*	probably null	Het
Slc35f1	A	T	10: 52,567,157 (GRCm39)	H22L	possibly damaging	Het
Smg6	A	G	11: 74,932,820 (GRCm39)	D98G	possibly damaging	Het
Strbp	A	G	2: 37,489,186 (GRCm39)	Y527H	probably damaging	Het
Strbp	A	G	2: 37,490,818 (GRCm39)	V479A	probably benign	Het
Tdg	G	T	10: 82,477,305 (GRCm39)	V119L	probably benign	Het
Trav10d	G	A	14: 53,048,825 (GRCm39)	R72H	probably benign	Het
Trgc2	T	C	13: 19,489,297 (GRCm39)	Y145C	unknown	Het
Trim25	T	C	11: 88,900,093 (GRCm39)	L280P	probably damaging	Het
Tsc22d4	A	G	5: 137,760,726 (GRCm39)	D49G	probably damaging	Het
Ttn	T	C	2: 76,720,534 (GRCm39)		probably benign	Het
Tyr	T	A	7: 87,121,703 (GRCm39)	H363L	probably damaging	Het
Ubr5	A	G	15: 37,989,822 (GRCm39)	S2020P	probably damaging	Het
Usp9y	T	C	Y: 1,315,928 (GRCm39)	D2069G	probably damaging	Het
Vmn1r170	T	C	7: 23,305,963 (GRCm39)	W122R	probably benign	Het
Wdr7	G	A	18: 63,958,310 (GRCm39)		probably null	Het
Ylpm1	T	A	12: 85,077,029 (GRCm39)	H793Q	probably damaging	Het
Zfp266	G	A	9: 20,410,659 (GRCm39)	T506I	probably damaging	Het
Zfp518a	T	C	19: 40,904,300 (GRCm39)	S1410P	probably damaging	Het

Other mutations in Cks1b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
PIT4486001:Cks1b	UTSW	3	89,323,621 (GRCm39)	missense	probably damaging	1.00
R1164:Cks1b	UTSW	3	89,323,249 (GRCm39)	unclassified	probably benign
R7719:Cks1b	UTSW	3	89,323,635 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- GACTCTTCACAGCATGCAGG -3'
(R):5'- GCTCTCAGTATGTAGGTCAGTGTC -3'

Sequencing Primer
(F):5'- GAGAGCCTGCCCTTTCTG -3'
(R):5'- CAGTATGTAGGTCAGTGTCTGGCAG -3'

Posted On

2016-08-04