Incidental Mutation 'R5379:Srsf11'
ID |
425731 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Srsf11
|
Ensembl Gene |
ENSMUSG00000055436 |
Gene Name |
serine and arginine-rich splicing factor 11 |
Synonyms |
Sfrs11, 2610019N13Rik, 0610009J05Rik |
MMRRC Submission |
042954-MU
|
Accession Numbers |
|
Essential gene? |
Essential
(E-score: 1.000)
|
Stock # |
R5379 (G1)
|
Quality Score |
225 |
Status
|
Validated
|
Chromosome |
3 |
Chromosomal Location |
157716552-157742311 bp(-) (GRCm39) |
Type of Mutation |
unclassified |
DNA Base Change (assembly) |
C to T
at 157728981 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
|
Ref Sequence |
ENSEMBL: ENSMUSP00000142759
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000069025]
[ENSMUST00000072875]
[ENSMUST00000121326]
[ENSMUST00000126716]
[ENSMUST00000137444]
[ENSMUST00000198705]
|
AlphaFold |
E9Q6E5 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000069025
|
SMART Domains |
Protein: ENSMUSP00000063916 Gene: ENSMUSG00000055436
Domain | Start | End | E-Value | Type |
low complexity region
|
64 |
88 |
N/A |
INTRINSIC |
low complexity region
|
91 |
114 |
N/A |
INTRINSIC |
low complexity region
|
186 |
264 |
N/A |
INTRINSIC |
low complexity region
|
271 |
310 |
N/A |
INTRINSIC |
low complexity region
|
328 |
335 |
N/A |
INTRINSIC |
low complexity region
|
365 |
374 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000072875
|
SMART Domains |
Protein: ENSMUSP00000072651 Gene: ENSMUSG00000055436
Domain | Start | End | E-Value | Type |
low complexity region
|
5 |
24 |
N/A |
INTRINSIC |
RRM
|
27 |
101 |
3.13e-7 |
SMART |
low complexity region
|
117 |
141 |
N/A |
INTRINSIC |
low complexity region
|
144 |
167 |
N/A |
INTRINSIC |
low complexity region
|
239 |
317 |
N/A |
INTRINSIC |
low complexity region
|
327 |
409 |
N/A |
INTRINSIC |
low complexity region
|
428 |
435 |
N/A |
INTRINSIC |
low complexity region
|
465 |
474 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000089922
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000121326
|
SMART Domains |
Protein: ENSMUSP00000113685 Gene: ENSMUSG00000055436
Domain | Start | End | E-Value | Type |
low complexity region
|
2 |
16 |
N/A |
INTRINSIC |
low complexity region
|
40 |
59 |
N/A |
INTRINSIC |
RRM
|
62 |
136 |
3.13e-7 |
SMART |
low complexity region
|
152 |
176 |
N/A |
INTRINSIC |
low complexity region
|
179 |
202 |
N/A |
INTRINSIC |
low complexity region
|
274 |
352 |
N/A |
INTRINSIC |
low complexity region
|
362 |
444 |
N/A |
INTRINSIC |
low complexity region
|
463 |
470 |
N/A |
INTRINSIC |
low complexity region
|
500 |
509 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000126716
|
SMART Domains |
Protein: ENSMUSP00000114370 Gene: ENSMUSG00000055436
Domain | Start | End | E-Value | Type |
low complexity region
|
5 |
24 |
N/A |
INTRINSIC |
RRM
|
27 |
101 |
3.13e-7 |
SMART |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000127778
|
Predicted Effect |
|
SMART Domains |
Protein: ENSMUSP00000115487 Gene: ENSMUSG00000055436 AA Change: R90Q
Domain | Start | End | E-Value | Type |
RRM
|
7 |
81 |
3.13e-7 |
SMART |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000152274
|
SMART Domains |
Protein: ENSMUSP00000127239 Gene: ENSMUSG00000055436
Domain | Start | End | E-Value | Type |
low complexity region
|
64 |
88 |
N/A |
INTRINSIC |
low complexity region
|
91 |
114 |
N/A |
INTRINSIC |
low complexity region
|
186 |
264 |
N/A |
INTRINSIC |
low complexity region
|
274 |
356 |
N/A |
INTRINSIC |
low complexity region
|
375 |
382 |
N/A |
INTRINSIC |
low complexity region
|
412 |
421 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000199520
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000133090
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000196034
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000137444
|
SMART Domains |
Protein: ENSMUSP00000122686 Gene: ENSMUSG00000055436
Domain | Start | End | E-Value | Type |
low complexity region
|
5 |
24 |
N/A |
INTRINSIC |
RRM
|
27 |
101 |
3.13e-7 |
SMART |
low complexity region
|
117 |
141 |
N/A |
INTRINSIC |
low complexity region
|
144 |
167 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000140491
|
SMART Domains |
Protein: ENSMUSP00000118767 Gene: ENSMUSG00000055436
Domain | Start | End | E-Value | Type |
Blast:RRM
|
2 |
42 |
1e-21 |
BLAST |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000198705
|
SMART Domains |
Protein: ENSMUSP00000142759 Gene: ENSMUSG00000055436
Domain | Start | End | E-Value | Type |
low complexity region
|
81 |
175 |
N/A |
INTRINSIC |
|
Meta Mutation Damage Score |
0.0898 |
Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.5%
- 10x: 97.0%
- 20x: 94.5%
|
Validation Efficiency |
97% (58/60) |
MGI Phenotype |
FUNCTION: The protein encoded by this gene is a member of the serine/arginine (SR)-rich family of pre-mRNA splicing factors, which constitute part of the spliceosome. Each of these factors contains an RNA recognition motif (RRM) for binding RNA and an RS domain for binding other proteins. The RS domain is rich in serine and arginine residues and facilitates interaction between different SR splicing factors. In addition to being critical for mRNA splicing, the SR proteins have also been shown to be involved in mRNA export from the nucleus and in translation. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2014]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 54 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Adcy1 |
T |
A |
11: 7,096,532 (GRCm39) |
L640Q |
probably damaging |
Het |
Afap1l1 |
T |
C |
18: 61,891,721 (GRCm39) |
E32G |
probably damaging |
Het |
Atp1a1 |
T |
A |
3: 101,489,411 (GRCm39) |
M734L |
probably benign |
Het |
B4galt6 |
T |
C |
18: 20,822,296 (GRCm39) |
D294G |
probably damaging |
Het |
Baz1a |
T |
G |
12: 54,941,133 (GRCm39) |
D1539A |
probably damaging |
Het |
Bmper |
T |
A |
9: 23,208,520 (GRCm39) |
S141T |
probably benign |
Het |
Camkv |
T |
C |
9: 107,822,545 (GRCm39) |
V20A |
probably damaging |
Het |
Chst8 |
A |
G |
7: 34,375,279 (GRCm39) |
Y187H |
probably damaging |
Het |
Coro1c |
A |
G |
5: 113,983,443 (GRCm39) |
Y362H |
probably damaging |
Het |
Csmd3 |
C |
A |
15: 47,499,846 (GRCm39) |
G3008* |
probably null |
Het |
Dnah17 |
T |
C |
11: 118,008,029 (GRCm39) |
|
probably benign |
Het |
Dnajb1 |
C |
T |
8: 84,335,135 (GRCm39) |
R59C |
possibly damaging |
Het |
Dpf1 |
A |
G |
7: 29,003,533 (GRCm39) |
K10E |
probably benign |
Het |
Eif5 |
T |
C |
12: 111,509,989 (GRCm39) |
L311P |
probably damaging |
Het |
Eqtn |
A |
G |
4: 94,795,825 (GRCm39) |
F251S |
probably damaging |
Het |
Fancg |
A |
G |
4: 43,002,998 (GRCm39) |
S620P |
probably benign |
Het |
Farp1 |
T |
C |
14: 121,494,169 (GRCm39) |
V550A |
possibly damaging |
Het |
Fat2 |
T |
C |
11: 55,194,767 (GRCm39) |
T1091A |
probably damaging |
Het |
Fbxo33 |
A |
G |
12: 59,266,246 (GRCm39) |
|
probably benign |
Het |
Fndc5 |
A |
T |
4: 129,035,887 (GRCm39) |
I175F |
probably damaging |
Het |
Gtf2ird2 |
G |
C |
5: 134,246,310 (GRCm39) |
R856P |
probably benign |
Het |
Hc |
A |
T |
2: 34,881,077 (GRCm39) |
F1481I |
probably damaging |
Het |
Helz2 |
T |
A |
2: 180,876,862 (GRCm39) |
T1211S |
probably benign |
Het |
Hmcn2 |
G |
A |
2: 31,299,023 (GRCm39) |
V2790M |
probably damaging |
Het |
Ighv1-82 |
T |
C |
12: 115,916,297 (GRCm39) |
Y71C |
probably damaging |
Het |
Itgam |
A |
G |
7: 127,711,560 (GRCm39) |
D725G |
probably damaging |
Het |
Kif9 |
T |
C |
9: 110,350,371 (GRCm39) |
V754A |
probably benign |
Het |
Larp4b |
C |
A |
13: 9,186,945 (GRCm39) |
T91K |
probably benign |
Het |
Mki67 |
T |
C |
7: 135,299,190 (GRCm39) |
E1948G |
possibly damaging |
Het |
Mllt6 |
G |
A |
11: 97,560,326 (GRCm39) |
S210N |
possibly damaging |
Het |
Mrgprb13 |
A |
T |
7: 47,961,496 (GRCm39) |
|
noncoding transcript |
Het |
Nlrc4 |
A |
T |
17: 74,755,078 (GRCm39) |
L46* |
probably null |
Het |
Or13c7c |
A |
G |
4: 43,836,010 (GRCm39) |
I160T |
probably benign |
Het |
Or7g21 |
A |
T |
9: 19,032,373 (GRCm39) |
T38S |
probably damaging |
Het |
Or8d1b |
T |
C |
9: 38,887,151 (GRCm39) |
Y60H |
possibly damaging |
Het |
Orm1 |
A |
G |
4: 63,264,230 (GRCm39) |
|
probably null |
Het |
Parva |
A |
T |
7: 112,178,927 (GRCm39) |
H311L |
probably benign |
Het |
Pramel25 |
A |
G |
4: 143,521,493 (GRCm39) |
I370V |
probably benign |
Het |
Proca1 |
C |
A |
11: 78,096,092 (GRCm39) |
S154R |
probably damaging |
Het |
R3hdm2 |
T |
C |
10: 127,307,771 (GRCm39) |
V344A |
probably damaging |
Het |
Rabep1 |
A |
T |
11: 70,799,247 (GRCm39) |
K293N |
probably damaging |
Het |
Ranbp6 |
A |
G |
19: 29,789,083 (GRCm39) |
V423A |
probably damaging |
Het |
Rnf20 |
T |
A |
4: 49,652,639 (GRCm39) |
Y711N |
possibly damaging |
Het |
Sf3b1 |
A |
T |
1: 55,042,309 (GRCm39) |
M498K |
possibly damaging |
Het |
Sin3a |
T |
C |
9: 57,018,272 (GRCm39) |
M897T |
probably benign |
Het |
Sp140 |
T |
A |
1: 85,538,549 (GRCm39) |
D95E |
possibly damaging |
Het |
Srbd1 |
A |
C |
17: 86,308,964 (GRCm39) |
I738S |
possibly damaging |
Het |
Svep1 |
A |
G |
4: 58,072,991 (GRCm39) |
V2106A |
possibly damaging |
Het |
Tasor2 |
T |
C |
13: 3,638,496 (GRCm39) |
R412G |
probably benign |
Het |
Tex47 |
G |
A |
5: 7,354,843 (GRCm39) |
R8Q |
probably null |
Het |
Trpc7 |
A |
G |
13: 56,952,363 (GRCm39) |
Y548H |
probably damaging |
Het |
Vmn1r170 |
A |
T |
7: 23,306,054 (GRCm39) |
H152L |
possibly damaging |
Het |
Zfp184 |
A |
G |
13: 22,144,051 (GRCm39) |
I586V |
probably damaging |
Het |
Zfp454 |
T |
C |
11: 50,774,629 (GRCm39) |
T15A |
probably damaging |
Het |
|
Other mutations in Srsf11 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01598:Srsf11
|
APN |
3 |
157,717,672 (GRCm39) |
unclassified |
probably benign |
|
IGL01600:Srsf11
|
APN |
3 |
157,725,079 (GRCm39) |
splice site |
probably benign |
|
IGL02724:Srsf11
|
APN |
3 |
157,722,068 (GRCm39) |
unclassified |
probably benign |
|
IGL03147:Srsf11
|
UTSW |
3 |
157,732,377 (GRCm39) |
missense |
probably damaging |
1.00 |
R0195:Srsf11
|
UTSW |
3 |
157,742,172 (GRCm39) |
unclassified |
probably benign |
|
R0578:Srsf11
|
UTSW |
3 |
157,717,704 (GRCm39) |
unclassified |
probably benign |
|
R0580:Srsf11
|
UTSW |
3 |
157,717,704 (GRCm39) |
unclassified |
probably benign |
|
R1075:Srsf11
|
UTSW |
3 |
157,718,427 (GRCm39) |
intron |
probably benign |
|
R1604:Srsf11
|
UTSW |
3 |
157,724,948 (GRCm39) |
critical splice donor site |
probably null |
|
R1797:Srsf11
|
UTSW |
3 |
157,725,065 (GRCm39) |
missense |
possibly damaging |
0.92 |
R1815:Srsf11
|
UTSW |
3 |
157,722,064 (GRCm39) |
unclassified |
probably benign |
|
R1899:Srsf11
|
UTSW |
3 |
157,737,217 (GRCm39) |
unclassified |
probably benign |
|
R2105:Srsf11
|
UTSW |
3 |
157,724,982 (GRCm39) |
missense |
probably damaging |
0.99 |
R4605:Srsf11
|
UTSW |
3 |
157,728,560 (GRCm39) |
nonsense |
probably null |
|
R4655:Srsf11
|
UTSW |
3 |
157,728,972 (GRCm39) |
missense |
probably benign |
0.15 |
R4737:Srsf11
|
UTSW |
3 |
157,732,369 (GRCm39) |
nonsense |
probably null |
|
R5244:Srsf11
|
UTSW |
3 |
157,728,981 (GRCm39) |
unclassified |
probably benign |
|
R5245:Srsf11
|
UTSW |
3 |
157,728,981 (GRCm39) |
unclassified |
probably benign |
|
R5401:Srsf11
|
UTSW |
3 |
157,728,981 (GRCm39) |
unclassified |
probably benign |
|
R5625:Srsf11
|
UTSW |
3 |
157,728,981 (GRCm39) |
unclassified |
probably benign |
|
R5763:Srsf11
|
UTSW |
3 |
157,728,981 (GRCm39) |
unclassified |
probably benign |
|
R5814:Srsf11
|
UTSW |
3 |
157,728,981 (GRCm39) |
unclassified |
probably benign |
|
R5938:Srsf11
|
UTSW |
3 |
157,728,981 (GRCm39) |
unclassified |
probably benign |
|
R5944:Srsf11
|
UTSW |
3 |
157,728,981 (GRCm39) |
unclassified |
probably benign |
|
R5945:Srsf11
|
UTSW |
3 |
157,728,981 (GRCm39) |
unclassified |
probably benign |
|
R6126:Srsf11
|
UTSW |
3 |
157,728,981 (GRCm39) |
unclassified |
probably benign |
|
R6175:Srsf11
|
UTSW |
3 |
157,728,981 (GRCm39) |
unclassified |
probably benign |
|
R6427:Srsf11
|
UTSW |
3 |
157,728,981 (GRCm39) |
unclassified |
probably benign |
|
R6435:Srsf11
|
UTSW |
3 |
157,728,981 (GRCm39) |
unclassified |
probably benign |
|
R6436:Srsf11
|
UTSW |
3 |
157,728,981 (GRCm39) |
unclassified |
probably benign |
|
R6614:Srsf11
|
UTSW |
3 |
157,728,981 (GRCm39) |
unclassified |
probably benign |
|
R6616:Srsf11
|
UTSW |
3 |
157,728,981 (GRCm39) |
unclassified |
probably benign |
|
R7615:Srsf11
|
UTSW |
3 |
157,722,062 (GRCm39) |
missense |
unknown |
|
R8787:Srsf11
|
UTSW |
3 |
157,718,037 (GRCm39) |
missense |
unknown |
|
R9352:Srsf11
|
UTSW |
3 |
157,717,836 (GRCm39) |
missense |
unknown |
|
R9547:Srsf11
|
UTSW |
3 |
157,717,735 (GRCm39) |
missense |
unknown |
|
X0017:Srsf11
|
UTSW |
3 |
157,721,986 (GRCm39) |
unclassified |
probably benign |
|
|
Predicted Primers |
PCR Primer
(F):5'- ACACCACCTGAGTTTGTTGAAAG -3'
(R):5'- AAGCCCTACTCTTGATTCCAAC -3'
Sequencing Primer
(F):5'- GTCAGAATGAAACTTCAATGTGTG -3'
(R):5'- ACTCTTGATTCCAACAGAATATTTCC -3'
|
Posted On |
2016-08-04 |