Incidental Mutation 'R5395:Ly75'
ID 426098
Institutional Source Beutler Lab
Gene Symbol Ly75
Ensembl Gene ENSMUSG00000026980
Gene Name lymphocyte antigen 75
Synonyms DEC-205, CD205
MMRRC Submission 042967-MU
Accession Numbers

Genbank: NM_013825

Essential gene? Non essential (E-score: 0.000) question?
Stock # R5395 (G1)
Quality Score 225
Status Not validated
Chromosome 2
Chromosomal Location 60292103-60383303 bp(-) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) A to T at 60365111 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Asparagine to Lysine at position 234 (N234K)
Ref Sequence ENSEMBL: ENSMUSP00000028362 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000028362] [ENSMUST00000112533]
AlphaFold Q60767
Predicted Effect probably benign
Transcript: ENSMUST00000028362
AA Change: N234K

PolyPhen 2 Score 0.415 (Sensitivity: 0.89; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000028362
Gene: ENSMUSG00000026980
AA Change: N234K

DomainStartEndE-ValueType
signal peptide 1 27 N/A INTRINSIC
RICIN 33 146 2.63e-17 SMART
FN2 162 209 1.22e-23 SMART
CLECT 216 341 7.36e-32 SMART
CLECT 361 486 9.28e-29 SMART
CLECT 501 624 1.11e-17 SMART
CLECT 643 791 1.93e-26 SMART
CLECT 811 932 7.94e-2 SMART
CLECT 952 1091 5.81e-21 SMART
CLECT 1104 1222 1.04e-22 SMART
CLECT 1240 1382 3.48e-10 SMART
CLECT 1395 1513 9.59e-22 SMART
CLECT 1530 1661 7.79e-22 SMART
transmembrane domain 1670 1692 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000112533
AA Change: N234K

PolyPhen 2 Score 0.185 (Sensitivity: 0.92; Specificity: 0.87)
SMART Domains Protein: ENSMUSP00000108152
Gene: ENSMUSG00000026980
AA Change: N234K

DomainStartEndE-ValueType
signal peptide 1 27 N/A INTRINSIC
RICIN 33 146 2.63e-17 SMART
FN2 162 209 1.22e-23 SMART
CLECT 216 341 7.36e-32 SMART
CLECT 361 486 9.28e-29 SMART
CLECT 501 624 1.11e-17 SMART
CLECT 643 791 1.93e-26 SMART
CLECT 811 932 7.94e-2 SMART
CLECT 952 1091 5.81e-21 SMART
CLECT 1104 1222 1.04e-22 SMART
CLECT 1240 1382 3.48e-10 SMART
CLECT 1395 1513 9.59e-22 SMART
CLECT 1530 1661 7.79e-22 SMART
transmembrane domain 1670 1692 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000124654
Predicted Effect noncoding transcript
Transcript: ENSMUST00000151984
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.7%
  • 10x: 97.4%
  • 20x: 95.7%
Validation Efficiency
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele display abnormalities in CD8-positive T cell morphology and cytotoxic T cell physiology. [provided by MGI curators]
Allele List at MGI

All alleles(7) : Targeted, knock-out(1) Targeted, other(1) Gene trapped(5)

Other mutations in this stock
Total: 72 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca4 A G 3: 122,080,941 (GRCm38) I268V probably benign Het
Actn1 T A 12: 80,170,703 (GRCm38) I782F probably benign Het
Adamdec1 A C 14: 68,570,903 (GRCm38) S333A probably benign Het
Agbl5 C A 5: 30,890,338 (GRCm38) T58N probably damaging Het
Apoo-ps T A 13: 107,414,493 (GRCm38) noncoding transcript Het
Arhgef10l T C 4: 140,570,290 (GRCm38) N277S probably benign Het
Ascc2 A G 11: 4,659,273 (GRCm38) E241G possibly damaging Het
Atp13a4 A G 16: 29,456,604 (GRCm38) V354A possibly damaging Het
Atp13a4 A T 16: 29,420,888 (GRCm38) Y835* probably null Het
Bcas3 T C 11: 85,825,249 (GRCm38) S426P probably damaging Het
Birc3 T C 9: 7,861,174 (GRCm38) R48G probably damaging Het
Cacna2d4 T C 6: 119,271,418 (GRCm38) S397P possibly damaging Het
Ccng2 T C 5: 93,269,398 (GRCm38) M91T possibly damaging Het
Clk3 G A 9: 57,753,339 (GRCm38) T473M probably damaging Het
Cog2 T A 8: 124,545,221 (GRCm38) H491Q probably benign Het
Cyp4f40 C T 17: 32,669,853 (GRCm38) T202I probably benign Het
Dennd1a A T 2: 37,802,128 (GRCm38) F181I probably damaging Het
Fcrl6 G T 1: 172,598,720 (GRCm38) A170D possibly damaging Het
Fev T C 1: 74,882,664 (GRCm38) probably null Het
Flnb A G 14: 7,883,881 (GRCm38) N369S probably benign Het
Flt3 A G 5: 147,354,823 (GRCm38) F606L probably damaging Het
Gdf9 T C 11: 53,433,797 (GRCm38) V131A probably benign Het
Gdnf T A 15: 7,834,684 (GRCm38) L192Q probably damaging Het
Gjc2 A T 11: 59,177,489 (GRCm38) C56S possibly damaging Het
Gli3 T C 13: 15,714,950 (GRCm38) F550L probably damaging Het
Gm1110 T C 9: 26,889,632 (GRCm38) E422G probably benign Het
Gm14325 G A 2: 177,832,984 (GRCm38) H102Y possibly damaging Het
Gnb2 A G 5: 137,528,526 (GRCm38) S334P probably damaging Het
Icam2 A T 11: 106,382,473 (GRCm38) probably null Het
Inca1 C T 11: 70,690,438 (GRCm38) probably null Het
Itgb8 A C 12: 119,170,741 (GRCm38) C530W probably damaging Het
Lrp1 T C 10: 127,595,297 (GRCm38) D332G probably damaging Het
Mcm5 G A 8: 75,123,026 (GRCm38) S542N probably benign Het
Mcm9 A T 10: 53,538,692 (GRCm38) N97K possibly damaging Het
Morc2a G A 11: 3,688,232 (GRCm38) R986H possibly damaging Het
Neu2 T A 1: 87,596,675 (GRCm38) probably null Het
Nfatc1 G A 18: 80,636,020 (GRCm38) P718S possibly damaging Het
Nol6 G A 4: 41,118,392 (GRCm38) probably benign Het
Olfr1406 A T 1: 173,183,680 (GRCm38) Y251* probably null Het
Otogl T C 10: 107,817,138 (GRCm38) N1118D probably benign Het
Pcdh15 T A 10: 74,185,287 (GRCm38) I111K probably damaging Het
Phkb A G 8: 86,017,468 (GRCm38) D582G probably damaging Het
Piwil2 G T 14: 70,395,397 (GRCm38) N575K probably benign Het
Pou4f2 T A 8: 78,435,072 (GRCm38) I301F probably damaging Het
Prkd1 T C 12: 50,391,432 (GRCm38) N409S probably damaging Het
Ptpn21 T G 12: 98,715,117 (GRCm38) K86T probably damaging Het
Raly T A 2: 154,864,007 (GRCm38) probably null Het
Rangap1 A G 15: 81,706,446 (GRCm38) F482L probably benign Het
Rapgef1 T A 2: 29,737,965 (GRCm38) N1052K probably damaging Het
Rnf169 A T 7: 99,935,160 (GRCm38) probably null Het
Sdr16c5 T C 4: 4,016,277 (GRCm38) S50G probably benign Het
Sin3a G A 9: 57,105,673 (GRCm38) R612H probably damaging Het
Six6 T A 12: 72,941,701 (GRCm38) L216* probably null Het
Slc20a1 A T 2: 129,208,337 (GRCm38) N472Y probably damaging Het
Slc35d1 C T 4: 103,211,375 (GRCm38) probably null Het
Slc45a2 C T 15: 11,027,785 (GRCm38) T480I probably damaging Het
Slc7a8 C A 14: 54,733,277 (GRCm38) G306* probably null Het
Slc9a8 T A 2: 167,467,722 (GRCm38) F335L probably damaging Het
Smyd1 T G 6: 71,219,390 (GRCm38) K338T possibly damaging Het
Snd1 T A 6: 28,526,184 (GRCm38) V187E probably damaging Het
Spag9 T G 11: 94,091,751 (GRCm38) probably null Het
Tnfsf9 C A 17: 57,105,592 (GRCm38) T54K probably benign Het
Trim24 T G 6: 37,957,744 (GRCm38) V798G probably damaging Het
Tyr C A 7: 87,472,490 (GRCm38) A365S probably damaging Het
Usp43 T A 11: 67,897,358 (GRCm38) probably null Het
Vmn2r55 T C 7: 12,651,947 (GRCm38) D702G probably damaging Het
Vmn2r72 A G 7: 85,750,897 (GRCm38) S315P possibly damaging Het
Wdr64 T A 1: 175,755,598 (GRCm38) F367I probably damaging Het
Zc3h7b G A 15: 81,772,501 (GRCm38) R173K possibly damaging Het
Zfp493 T A 13: 67,783,846 (GRCm38) C21* probably null Het
Zfp825 T C 13: 74,480,546 (GRCm38) T284A possibly damaging Het
Zpbp2 T A 11: 98,558,213 (GRCm38) V275D probably damaging Het
Other mutations in Ly75
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00561:Ly75 APN 2 60,376,077 (GRCm38) missense probably damaging 1.00
IGL01072:Ly75 APN 2 60,354,496 (GRCm38) missense probably damaging 1.00
IGL01409:Ly75 APN 2 60,321,692 (GRCm38) splice site probably null
IGL01432:Ly75 APN 2 60,376,007 (GRCm38) missense probably damaging 1.00
IGL01626:Ly75 APN 2 60,301,015 (GRCm38) missense probably benign 0.13
IGL01690:Ly75 APN 2 60,338,311 (GRCm38) missense probably damaging 1.00
IGL01862:Ly75 APN 2 60,299,172 (GRCm38) missense probably damaging 1.00
IGL01982:Ly75 APN 2 60,311,764 (GRCm38) missense probably damaging 1.00
IGL02075:Ly75 APN 2 60,352,356 (GRCm38) missense probably damaging 0.99
IGL02338:Ly75 APN 2 60,354,452 (GRCm38) missense probably benign 0.04
IGL02364:Ly75 APN 2 60,358,507 (GRCm38) missense probably damaging 1.00
IGL02456:Ly75 APN 2 60,293,781 (GRCm38) missense probably benign 0.09
IGL02474:Ly75 APN 2 60,383,182 (GRCm38) missense probably null 1.00
IGL02608:Ly75 APN 2 60,321,900 (GRCm38) missense probably benign 0.41
IGL02986:Ly75 APN 2 60,308,191 (GRCm38) missense probably damaging 1.00
IGL03015:Ly75 APN 2 60,376,160 (GRCm38) missense probably damaging 1.00
IGL03049:Ly75 APN 2 60,352,070 (GRCm38) missense probably damaging 0.99
euphues UTSW 2 60,299,045 (GRCm38) critical splice donor site probably null
four_score UTSW 2 60,311,771 (GRCm38) missense possibly damaging 0.75
lyly UTSW 2 60,327,873 (GRCm38) missense possibly damaging 0.49
Witty UTSW 2 60,354,500 (GRCm38) missense probably damaging 1.00
D605:Ly75 UTSW 2 60,352,352 (GRCm38) critical splice donor site probably null
R0046:Ly75 UTSW 2 60,339,457 (GRCm38) intron probably benign
R0055:Ly75 UTSW 2 60,321,918 (GRCm38) missense probably benign 0.01
R0055:Ly75 UTSW 2 60,321,918 (GRCm38) missense probably benign 0.01
R0071:Ly75 UTSW 2 60,321,819 (GRCm38) missense probably benign 0.01
R0071:Ly75 UTSW 2 60,321,819 (GRCm38) missense probably benign 0.01
R0285:Ly75 UTSW 2 60,318,319 (GRCm38) missense probably damaging 1.00
R0387:Ly75 UTSW 2 60,306,404 (GRCm38) missense probably benign 0.20
R0492:Ly75 UTSW 2 60,308,276 (GRCm38) missense probably damaging 1.00
R0688:Ly75 UTSW 2 60,316,221 (GRCm38) missense probably benign 0.41
R1367:Ly75 UTSW 2 60,293,758 (GRCm38) splice site probably null
R1463:Ly75 UTSW 2 60,368,757 (GRCm38) critical splice donor site probably null
R1581:Ly75 UTSW 2 60,327,893 (GRCm38) missense probably damaging 1.00
R1663:Ly75 UTSW 2 60,314,234 (GRCm38) missense probably damaging 1.00
R1818:Ly75 UTSW 2 60,311,777 (GRCm38) missense probably damaging 1.00
R1881:Ly75 UTSW 2 60,349,940 (GRCm38) missense probably benign 0.00
R2244:Ly75 UTSW 2 60,349,913 (GRCm38) missense probably benign 0.01
R2905:Ly75 UTSW 2 60,334,554 (GRCm38) missense probably benign 0.00
R3967:Ly75 UTSW 2 60,327,873 (GRCm38) missense possibly damaging 0.49
R3968:Ly75 UTSW 2 60,327,873 (GRCm38) missense possibly damaging 0.49
R4039:Ly75 UTSW 2 60,352,995 (GRCm38) missense probably damaging 1.00
R4406:Ly75 UTSW 2 60,354,550 (GRCm38) missense probably damaging 1.00
R4526:Ly75 UTSW 2 60,330,773 (GRCm38) missense probably benign 0.09
R4647:Ly75 UTSW 2 60,308,278 (GRCm38) missense probably damaging 1.00
R4795:Ly75 UTSW 2 60,349,940 (GRCm38) missense probably benign 0.00
R4796:Ly75 UTSW 2 60,349,940 (GRCm38) missense probably benign 0.00
R4962:Ly75 UTSW 2 60,352,125 (GRCm38) missense probably damaging 1.00
R4979:Ly75 UTSW 2 60,375,894 (GRCm38) missense probably damaging 1.00
R5072:Ly75 UTSW 2 60,375,963 (GRCm38) missense probably damaging 1.00
R5288:Ly75 UTSW 2 60,303,641 (GRCm38) missense probably damaging 1.00
R5373:Ly75 UTSW 2 60,311,771 (GRCm38) missense possibly damaging 0.75
R5374:Ly75 UTSW 2 60,311,771 (GRCm38) missense possibly damaging 0.75
R5384:Ly75 UTSW 2 60,334,487 (GRCm38) nonsense probably null
R5385:Ly75 UTSW 2 60,303,641 (GRCm38) missense probably damaging 1.00
R5531:Ly75 UTSW 2 60,365,145 (GRCm38) missense probably damaging 0.98
R5662:Ly75 UTSW 2 60,352,381 (GRCm38) missense probably damaging 1.00
R5667:Ly75 UTSW 2 60,308,311 (GRCm38) missense probably damaging 1.00
R5668:Ly75 UTSW 2 60,354,500 (GRCm38) missense probably damaging 1.00
R5671:Ly75 UTSW 2 60,308,311 (GRCm38) missense probably damaging 1.00
R5677:Ly75 UTSW 2 60,299,082 (GRCm38) missense probably benign 0.00
R5764:Ly75 UTSW 2 60,318,439 (GRCm38) missense probably benign
R5896:Ly75 UTSW 2 60,383,146 (GRCm38) missense probably benign
R6025:Ly75 UTSW 2 60,375,962 (GRCm38) missense probably damaging 1.00
R6113:Ly75 UTSW 2 60,368,873 (GRCm38) missense probably benign 0.04
R6448:Ly75 UTSW 2 60,299,045 (GRCm38) critical splice donor site probably null
R6601:Ly75 UTSW 2 60,318,376 (GRCm38) missense probably benign 0.11
R6745:Ly75 UTSW 2 60,308,179 (GRCm38) missense probably damaging 1.00
R6955:Ly75 UTSW 2 60,327,873 (GRCm38) missense possibly damaging 0.49
R6960:Ly75 UTSW 2 60,306,405 (GRCm38) missense probably benign
R7100:Ly75 UTSW 2 60,306,434 (GRCm38) missense probably benign
R7110:Ly75 UTSW 2 60,376,184 (GRCm38) missense probably benign 0.31
R7203:Ly75 UTSW 2 60,323,852 (GRCm38) nonsense probably null
R7291:Ly75 UTSW 2 60,329,993 (GRCm38) missense probably damaging 0.98
R7308:Ly75 UTSW 2 60,334,515 (GRCm38) missense probably benign 0.04
R7447:Ly75 UTSW 2 60,334,474 (GRCm38) nonsense probably null
R7512:Ly75 UTSW 2 60,334,563 (GRCm38) missense probably damaging 1.00
R7595:Ly75 UTSW 2 60,293,827 (GRCm38) missense probably benign 0.01
R7976:Ly75 UTSW 2 60,365,088 (GRCm38) missense probably damaging 1.00
R8005:Ly75 UTSW 2 60,332,934 (GRCm38) missense probably damaging 1.00
R8171:Ly75 UTSW 2 60,314,228 (GRCm38) missense possibly damaging 0.51
R8392:Ly75 UTSW 2 60,349,940 (GRCm38) missense probably benign 0.00
R8705:Ly75 UTSW 2 60,318,385 (GRCm38) missense probably damaging 0.98
R8714:Ly75 UTSW 2 60,334,485 (GRCm38) missense probably damaging 1.00
R8798:Ly75 UTSW 2 60,323,926 (GRCm38) missense probably benign 0.32
R8799:Ly75 UTSW 2 60,348,441 (GRCm38) missense probably damaging 1.00
R8834:Ly75 UTSW 2 60,331,089 (GRCm38) missense probably benign
R8990:Ly75 UTSW 2 60,358,559 (GRCm38) missense probably benign 0.10
R9015:Ly75 UTSW 2 60,316,098 (GRCm38) missense probably benign
R9547:Ly75 UTSW 2 60,330,725 (GRCm38) critical splice donor site probably null
R9628:Ly75 UTSW 2 60,327,941 (GRCm38) missense probably damaging 1.00
R9659:Ly75 UTSW 2 60,338,321 (GRCm38) missense probably damaging 1.00
R9660:Ly75 UTSW 2 60,323,840 (GRCm38) missense probably damaging 1.00
R9747:Ly75 UTSW 2 60,306,328 (GRCm38) critical splice donor site probably null
X0025:Ly75 UTSW 2 60,354,475 (GRCm38) missense probably damaging 1.00
Z1177:Ly75 UTSW 2 60,352,133 (GRCm38) missense possibly damaging 0.65
Z1177:Ly75 UTSW 2 60,350,004 (GRCm38) nonsense probably null
Predicted Primers PCR Primer
(F):5'- ATGCCTGGTTATTCAGTGTAGAAG -3'
(R):5'- CACTATGCACTGTGTCTTAGCC -3'

Sequencing Primer
(F):5'- TATTCAGTGTAGAAGAAGAAAGCATC -3'
(R):5'- CCAGATACGTTCCATGTGGTGAC -3'
Posted On 2016-08-04