Incidental Mutation 'R5423:Prpf8'
ID 426718
Institutional Source Beutler Lab
Gene Symbol Prpf8
Ensembl Gene ENSMUSG00000020850
Gene Name pre-mRNA processing factor 8
Synonyms Sfprp8l, D11Bwg0410e, DBF3/PRP8, Prp8
MMRRC Submission 042989-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.959) question?
Stock # R5423 (G1)
Quality Score 225
Status Validated
Chromosome 11
Chromosomal Location 75486816-75509449 bp(+) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) A to G at 75508958 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Tyrosine to Cysteine at position 2281 (Y2281C)
Ref Sequence ENSEMBL: ENSMUSP00000099568 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000018449] [ENSMUST00000042808] [ENSMUST00000042972] [ENSMUST00000102510] [ENSMUST00000118243] [ENSMUST00000123819]
AlphaFold Q99PV0
Predicted Effect probably damaging
Transcript: ENSMUST00000018449
AA Change: Y2281C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000018449
Gene: ENSMUSG00000020850
AA Change: Y2281C

DomainStartEndE-ValueType
Pfam:PRO8NT 58 209 1.6e-84 PFAM
low complexity region 369 388 N/A INTRINSIC
Pfam:PROCN 393 801 3.6e-226 PFAM
low complexity region 802 814 N/A INTRINSIC
Pfam:RRM_4 986 1079 7.1e-49 PFAM
Pfam:U5_2-snRNA_bdg 1208 1343 1.9e-73 PFAM
Pfam:U6-snRNA_bdg 1442 1601 3.7e-97 PFAM
Pfam:PRP8_domainIV 1760 1990 1.5e-132 PFAM
JAB_MPN 2099 2233 9.02e-30 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000042808
SMART Domains Protein: ENSMUSP00000044248
Gene: ENSMUSG00000038188

DomainStartEndE-ValueType
signal peptide 1 23 N/A INTRINSIC
EGF 54 90 2.16e1 SMART
EGF 101 133 1.36e1 SMART
EGF_like 165 193 4.55e1 SMART
EGF_Lam 225 263 8.78e-2 SMART
EGF_like 262 296 4.93e1 SMART
EGF 307 341 2.69e1 SMART
EGF 352 384 2.25e1 SMART
transmembrane domain 424 446 N/A INTRINSIC
low complexity region 520 535 N/A INTRINSIC
low complexity region 791 805 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000042972
SMART Domains Protein: ENSMUSP00000037238
Gene: ENSMUSG00000038195

DomainStartEndE-ValueType
low complexity region 14 24 N/A INTRINSIC
Pfam:Jnk-SapK_ap_N 27 195 2.1e-16 PFAM
Pfam:RILP 223 281 1.1e-21 PFAM
low complexity region 289 298 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000102510
AA Change: Y2281C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000099568
Gene: ENSMUSG00000020850
AA Change: Y2281C

DomainStartEndE-ValueType
Pfam:PRO8NT 58 209 1.6e-90 PFAM
low complexity region 369 388 N/A INTRINSIC
Pfam:PROCN 395 801 2.9e-239 PFAM
low complexity region 802 814 N/A INTRINSIC
Pfam:RRM_4 986 1077 1.5e-51 PFAM
Pfam:U5_2-snRNA_bdg 1210 1343 1.1e-77 PFAM
Pfam:U6-snRNA_bdg 1442 1600 4.2e-97 PFAM
Pfam:PRP8_domainIV 1760 1989 9.8e-134 PFAM
JAB_MPN 2099 2233 9.02e-30 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000118243
SMART Domains Protein: ENSMUSP00000114090
Gene: ENSMUSG00000038188

DomainStartEndE-ValueType
signal peptide 1 23 N/A INTRINSIC
EGF 54 90 2.16e1 SMART
EGF 101 133 1.36e1 SMART
EGF_like 165 193 4.55e1 SMART
EGF_Lam 225 263 8.78e-2 SMART
EGF_like 262 296 4.93e1 SMART
EGF 307 341 2.69e1 SMART
EGF 352 384 2.25e1 SMART
transmembrane domain 424 446 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000123819
Predicted Effect noncoding transcript
Transcript: ENSMUST00000156923
Meta Mutation Damage Score 0.9636 question?
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.6%
  • 10x: 97.3%
  • 20x: 95.3%
Validation Efficiency 98% (60/61)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Pre-mRNA splicing occurs in 2 sequential transesterification steps. The protein encoded by this gene is a component of both U2- and U12-dependent spliceosomes, and found to be essential for the catalytic step II in pre-mRNA splicing process. It contains several WD repeats, which function in protein-protein interactions. This protein has a sequence similarity to yeast Prp8 protein. This gene is a candidate gene for autosomal dominant retinitis pigmentosa. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice that are either heterozygous or homozygous for a knock-in allele exhibit abnormal retinal pigment epithelium morphology and late-onset retinal degeneration. These changes are more severe in homozygous mutant mice. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 54 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Acyp2 C T 11: 30,506,354 (GRCm38) E98K possibly damaging Het
Adam22 C A 5: 8,090,182 (GRCm38) G202W probably damaging Het
Adamts9 A G 6: 92,880,697 (GRCm38) I289T possibly damaging Het
Ak4 T G 4: 101,460,563 (GRCm38) I110S probably damaging Het
Arhgap9 T G 10: 127,329,549 (GRCm38) I609S probably damaging Het
Arid4a C A 12: 71,069,860 (GRCm38) S242* probably null Het
Ceacam1 T G 7: 25,474,526 (GRCm38) I235L probably benign Het
Chil3 T C 3: 106,148,662 (GRCm38) D365G probably damaging Het
Ckap2 A C 8: 22,177,196 (GRCm38) S216R probably benign Het
Cyp2e1 G T 7: 140,770,118 (GRCm38) V239L probably benign Het
Dnah7b T A 1: 46,358,271 (GRCm38) M3954K probably benign Het
Ercc6l2 A T 13: 63,872,258 (GRCm38) probably benign Het
Etv5 T C 16: 22,383,654 (GRCm38) D468G probably damaging Het
Fbxo44 T A 4: 148,154,229 (GRCm38) I213F probably benign Het
Gm5084 A G 13: 60,212,542 (GRCm38) noncoding transcript Het
Gpr17 G A 18: 31,947,641 (GRCm38) T123I probably damaging Het
Grin3a A G 4: 49,770,376 (GRCm38) probably benign Het
H2-D1 T G 17: 35,265,907 (GRCm38) L248R probably damaging Het
Hmcn1 T C 1: 150,701,972 (GRCm38) I2013V probably damaging Het
Hp1bp3 A T 4: 138,225,897 (GRCm38) D84V probably damaging Het
Ift140 T C 17: 25,033,085 (GRCm38) F33S probably damaging Het
Inhbc C G 10: 127,357,427 (GRCm38) C240S probably damaging Het
Iqgap1 T A 7: 80,799,862 (GRCm38) E62V probably damaging Het
Kcna4 G A 2: 107,295,806 (GRCm38) W295* probably null Het
Kdm4a C T 4: 118,138,908 (GRCm38) A975T probably damaging Het
Lrrtm3 T C 10: 64,088,152 (GRCm38) D412G possibly damaging Het
Midn A C 10: 80,155,193 (GRCm38) I346L probably benign Het
Ndufa10 C T 1: 92,462,320 (GRCm38) D259N probably benign Het
Nefh C A 11: 4,940,985 (GRCm38) A545S possibly damaging Het
Psip1 G A 4: 83,460,130 (GRCm38) probably benign Het
Ptpro G T 6: 137,442,707 (GRCm38) A184S probably damaging Het
Rab37 T A 11: 115,157,027 (GRCm38) I65K possibly damaging Het
Rasgrp4 T C 7: 29,145,136 (GRCm38) L247P probably damaging Het
Rnf20 T C 4: 49,644,620 (GRCm38) V295A probably damaging Het
Serpina3g A G 12: 104,237,994 (GRCm38) probably benign Het
Shox2 A G 3: 66,973,754 (GRCm38) probably benign Het
Skint6 T G 4: 112,850,740 (GRCm38) D977A possibly damaging Het
Slc25a23 C T 17: 57,053,597 (GRCm38) V248M probably damaging Het
Slco1a7 T A 6: 141,744,462 (GRCm38) K188N probably damaging Het
Smg1 A T 7: 118,146,071 (GRCm38) D3008E possibly damaging Het
St18 A G 1: 6,802,616 (GRCm38) S192G possibly damaging Het
Supt20 T A 3: 54,709,325 (GRCm38) V306E probably damaging Het
T T C 17: 8,441,765 (GRCm38) Y403H probably damaging Het
Tars3 C A 7: 65,683,819 (GRCm38) N588K probably benign Het
Tmem132c T C 5: 127,563,843 (GRCm38) V1026A probably benign Het
Trpv4 T C 5: 114,636,445 (GRCm38) T193A probably benign Het
Ubqln4 A G 3: 88,563,199 (GRCm38) N326S probably damaging Het
Uggt2 G A 14: 119,019,486 (GRCm38) T1112I probably damaging Het
Vasn C T 16: 4,648,420 (GRCm38) P77L probably benign Het
Vps9d1 A C 8: 123,247,965 (GRCm38) probably null Het
Washc4 C A 10: 83,579,554 (GRCm38) Q803K possibly damaging Het
Zcchc2 C T 1: 106,030,700 (GRCm38) T967I probably damaging Het
Zfp874a G A 13: 67,442,354 (GRCm38) L404F possibly damaging Het
Zscan30 T C 18: 23,971,716 (GRCm38) noncoding transcript Het
Other mutations in Prpf8
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01375:Prpf8 APN 11 75,494,295 (GRCm38) missense possibly damaging 0.94
IGL01376:Prpf8 APN 11 75,494,295 (GRCm38) missense possibly damaging 0.94
IGL01393:Prpf8 APN 11 75,494,295 (GRCm38) missense possibly damaging 0.94
IGL01395:Prpf8 APN 11 75,494,295 (GRCm38) missense possibly damaging 0.94
IGL01554:Prpf8 APN 11 75,495,646 (GRCm38) missense probably damaging 1.00
IGL01560:Prpf8 APN 11 75,490,406 (GRCm38) missense possibly damaging 0.55
IGL01886:Prpf8 APN 11 75,495,744 (GRCm38) missense probably benign 0.32
IGL01946:Prpf8 APN 11 75,499,992 (GRCm38) missense probably damaging 1.00
IGL02022:Prpf8 APN 11 75,501,834 (GRCm38) nonsense probably null
IGL02077:Prpf8 APN 11 75,495,809 (GRCm38) missense probably damaging 0.96
IGL02141:Prpf8 APN 11 75,490,672 (GRCm38) missense possibly damaging 0.68
IGL02455:Prpf8 APN 11 75,509,258 (GRCm38) missense probably benign 0.32
cutter UTSW 11 75,495,426 (GRCm38) splice site probably null
BB009:Prpf8 UTSW 11 75,492,597 (GRCm38) missense possibly damaging 0.92
BB019:Prpf8 UTSW 11 75,492,597 (GRCm38) missense possibly damaging 0.92
PIT4514001:Prpf8 UTSW 11 75,496,355 (GRCm38) missense possibly damaging 0.53
R0254:Prpf8 UTSW 11 75,506,362 (GRCm38) missense possibly damaging 0.93
R0270:Prpf8 UTSW 11 75,505,249 (GRCm38) missense probably damaging 0.99
R0504:Prpf8 UTSW 11 75,501,942 (GRCm38) splice site probably benign
R0573:Prpf8 UTSW 11 75,490,654 (GRCm38) missense probably damaging 1.00
R0613:Prpf8 UTSW 11 75,503,444 (GRCm38) missense probably damaging 1.00
R0893:Prpf8 UTSW 11 75,493,949 (GRCm38) missense probably damaging 1.00
R0967:Prpf8 UTSW 11 75,494,430 (GRCm38) missense probably damaging 1.00
R0975:Prpf8 UTSW 11 75,508,674 (GRCm38) unclassified probably benign
R1123:Prpf8 UTSW 11 75,495,285 (GRCm38) missense probably damaging 1.00
R1183:Prpf8 UTSW 11 75,490,330 (GRCm38) missense possibly damaging 0.95
R1857:Prpf8 UTSW 11 75,495,423 (GRCm38) critical splice donor site probably null
R1901:Prpf8 UTSW 11 75,504,744 (GRCm38) missense probably damaging 0.99
R1950:Prpf8 UTSW 11 75,496,511 (GRCm38) missense possibly damaging 0.72
R2116:Prpf8 UTSW 11 75,487,721 (GRCm38) missense possibly damaging 0.51
R2147:Prpf8 UTSW 11 75,490,531 (GRCm38) missense probably benign
R2185:Prpf8 UTSW 11 75,487,113 (GRCm38) nonsense probably null
R2271:Prpf8 UTSW 11 75,495,363 (GRCm38) missense probably damaging 1.00
R2272:Prpf8 UTSW 11 75,495,363 (GRCm38) missense probably damaging 1.00
R2898:Prpf8 UTSW 11 75,496,034 (GRCm38) missense probably benign 0.00
R3744:Prpf8 UTSW 11 75,506,721 (GRCm38) splice site probably null
R3893:Prpf8 UTSW 11 75,500,257 (GRCm38) missense possibly damaging 0.73
R4400:Prpf8 UTSW 11 75,490,702 (GRCm38) missense possibly damaging 0.63
R4510:Prpf8 UTSW 11 75,491,826 (GRCm38) missense probably damaging 0.96
R4511:Prpf8 UTSW 11 75,491,826 (GRCm38) missense probably damaging 0.96
R4784:Prpf8 UTSW 11 75,492,505 (GRCm38) missense probably damaging 1.00
R5089:Prpf8 UTSW 11 75,509,228 (GRCm38) splice site probably null
R5186:Prpf8 UTSW 11 75,489,783 (GRCm38) missense possibly damaging 0.93
R5215:Prpf8 UTSW 11 75,500,204 (GRCm38) missense probably benign 0.02
R5288:Prpf8 UTSW 11 75,495,799 (GRCm38) missense probably damaging 1.00
R5362:Prpf8 UTSW 11 75,506,410 (GRCm38) missense possibly damaging 0.53
R5384:Prpf8 UTSW 11 75,495,799 (GRCm38) missense probably damaging 1.00
R5386:Prpf8 UTSW 11 75,495,799 (GRCm38) missense probably damaging 1.00
R5472:Prpf8 UTSW 11 75,503,643 (GRCm38) missense possibly damaging 0.89
R5539:Prpf8 UTSW 11 75,503,638 (GRCm38) missense probably benign 0.20
R5620:Prpf8 UTSW 11 75,505,101 (GRCm38) missense possibly damaging 0.95
R5669:Prpf8 UTSW 11 75,504,738 (GRCm38) missense probably damaging 1.00
R5887:Prpf8 UTSW 11 75,500,908 (GRCm38) missense possibly damaging 0.87
R5948:Prpf8 UTSW 11 75,509,189 (GRCm38) missense possibly damaging 0.95
R6073:Prpf8 UTSW 11 75,494,022 (GRCm38) critical splice donor site probably null
R6250:Prpf8 UTSW 11 75,493,508 (GRCm38) missense possibly damaging 0.95
R6358:Prpf8 UTSW 11 75,491,495 (GRCm38) missense probably benign 0.33
R6629:Prpf8 UTSW 11 75,495,426 (GRCm38) splice site probably null
R6804:Prpf8 UTSW 11 75,499,809 (GRCm38) missense possibly damaging 0.71
R6922:Prpf8 UTSW 11 75,490,736 (GRCm38) missense probably damaging 1.00
R7035:Prpf8 UTSW 11 75,504,828 (GRCm38) missense possibly damaging 0.72
R7038:Prpf8 UTSW 11 75,496,158 (GRCm38) missense probably benign 0.02
R7089:Prpf8 UTSW 11 75,508,548 (GRCm38) missense probably damaging 0.99
R7101:Prpf8 UTSW 11 75,490,400 (GRCm38) missense possibly damaging 0.85
R7114:Prpf8 UTSW 11 75,503,355 (GRCm38) nonsense probably null
R7182:Prpf8 UTSW 11 75,490,727 (GRCm38) missense possibly damaging 0.96
R7290:Prpf8 UTSW 11 75,493,957 (GRCm38) missense possibly damaging 0.85
R7323:Prpf8 UTSW 11 75,491,784 (GRCm38) missense probably benign 0.32
R7485:Prpf8 UTSW 11 75,508,912 (GRCm38) nonsense probably null
R7522:Prpf8 UTSW 11 75,509,276 (GRCm38) missense possibly damaging 0.82
R7546:Prpf8 UTSW 11 75,508,374 (GRCm38) missense probably damaging 1.00
R7596:Prpf8 UTSW 11 75,491,504 (GRCm38) missense probably benign 0.03
R7699:Prpf8 UTSW 11 75,500,196 (GRCm38) missense probably benign 0.02
R7731:Prpf8 UTSW 11 75,508,906 (GRCm38) missense probably damaging 0.97
R7821:Prpf8 UTSW 11 75,494,474 (GRCm38) missense probably benign 0.01
R7932:Prpf8 UTSW 11 75,492,597 (GRCm38) missense possibly damaging 0.92
R8039:Prpf8 UTSW 11 75,502,542 (GRCm38) missense possibly damaging 0.95
R8067:Prpf8 UTSW 11 75,500,150 (GRCm38) missense probably damaging 0.98
R8316:Prpf8 UTSW 11 75,499,815 (GRCm38) missense possibly damaging 0.71
R8560:Prpf8 UTSW 11 75,491,774 (GRCm38) nonsense probably null
R8823:Prpf8 UTSW 11 75,493,456 (GRCm38) missense probably benign 0.05
R8977:Prpf8 UTSW 11 75,496,044 (GRCm38) missense probably benign 0.12
R9116:Prpf8 UTSW 11 75,489,763 (GRCm38) missense possibly damaging 0.71
R9166:Prpf8 UTSW 11 75,496,514 (GRCm38) missense possibly damaging 0.53
R9360:Prpf8 UTSW 11 75,490,330 (GRCm38) missense possibly damaging 0.95
R9453:Prpf8 UTSW 11 75,506,386 (GRCm38) missense possibly damaging 0.56
R9518:Prpf8 UTSW 11 75,503,660 (GRCm38) missense possibly damaging 0.72
R9532:Prpf8 UTSW 11 75,494,782 (GRCm38) missense probably benign 0.01
R9626:Prpf8 UTSW 11 75,494,855 (GRCm38) missense possibly damaging 0.53
R9760:Prpf8 UTSW 11 75,503,431 (GRCm38) missense probably benign 0.20
X0028:Prpf8 UTSW 11 75,506,764 (GRCm38) missense probably damaging 0.99
Z1177:Prpf8 UTSW 11 75,503,334 (GRCm38) missense probably benign 0.35
Predicted Primers PCR Primer
(F):5'- ATCATCACGTGCAGGTTGGTG -3'
(R):5'- TCGAACACCTAATGGGAGGG -3'

Sequencing Primer
(F):5'- CCTCTTGGGTGGAAATATTATAGAGC -3'
(R):5'- CACCTAATGGGAGGGGAAACATC -3'
Posted On 2016-09-01