Mutagenetix > Incidental Mutation

Incidental Mutation 'R5426:Vsig10l'

426883

Institutional Source

Beutler Lab

Gene Symbol

Vsig10l

Ensembl Gene

ENSMUSG00000070604

Gene Name

V-set and immunoglobulin domain containing 10 like

Synonyms

2210412E05Rik

MMRRC Submission

042992-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.197) question?

Stock #

R5426 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

43112575-43121443 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 43114247 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Threonine at position 190 (S190T)

Ref Sequence

ENSEMBL: ENSMUSP00000144692 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000107977] [ENSMUST00000203042] [ENSMUST00000203633] [ENSMUST00000203769] [ENSMUST00000204680]

AlphaFold

D3YZF7

Predicted Effect

probably benign
Transcript: ENSMUST00000107977
AA Change: S292T

PolyPhen 2 Score 0.177 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000103611
Gene: ENSMUSG00000070604
AA Change: S292T

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
low complexity region	28	52	N/A	INTRINSIC
IG	183	285	1.92e0	SMART
IG	298	383	2.15e-3	SMART
IGc2	406	465	4.19e-6	SMART
Blast:IG_like	582	649	1e-13	BLAST
transmembrane domain	764	786	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000203042

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000203152

Predicted Effect

probably benign
Transcript: ENSMUST00000203633

SMART Domains

Protein: ENSMUSP00000145061
Gene: ENSMUSG00000107482

Domain	Start	End	E-Value	Type
ETF	26	216	2.7e-65	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000203769
AA Change: S190T

PolyPhen 2 Score 0.968 (Sensitivity: 0.77; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000144692
Gene: ENSMUSG00000070604
AA Change: S190T

Domain	Start	End	E-Value	Type
IG	81	183	8.1e-3	SMART
IG	196	281	9.2e-6	SMART
IGc2	304	363	1.8e-8	SMART
Blast:IG_like	480	547	9e-14	BLAST
transmembrane domain	662	684	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000204680

SMART Domains

Protein: ENSMUSP00000145493
Gene: ENSMUSG00000107482

Domain	Start	End	E-Value	Type
ETF	26	168	2.4e-17	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000205247

Meta Mutation Damage Score

0.1147

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 97.0%
20x: 94.6%

Validation Efficiency

97% (85/88)

Allele List at MGI

Other mutations in this stock

Total: 80 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2010315B03Rik	T	A	9: 124,056,633 (GRCm39)	H122L	probably damaging	Het
9330182O14Rik	G	A	15: 40,011,932 (GRCm39)	M90I	unknown	Het
9330182O14Rik	G	A	15: 40,011,933 (GRCm39)	D91N	unknown	Het
Abca13	T	A	11: 9,240,722 (GRCm39)	S862T	probably damaging	Het
Acyp2	C	T	11: 30,456,354 (GRCm39)	E98K	possibly damaging	Het
Adgb	C	A	10: 10,226,004 (GRCm39)	A1405S	probably benign	Het
Adpgk	T	A	9: 59,204,832 (GRCm39)	V86E	probably damaging	Het
Agfg2	G	C	5: 137,666,020 (GRCm39)	P80A	probably damaging	Het
Akap11	G	A	14: 78,736,304 (GRCm39)	Q1829*	probably null	Het
Aldh1l1	G	A	6: 90,536,281 (GRCm39)	R62Q	probably benign	Het
Amd1	G	T	10: 40,166,183 (GRCm39)	D265E	probably damaging	Het
Aox4	A	T	1: 58,259,253 (GRCm39)	Q106L	probably damaging	Het
Arap2	A	T	5: 62,800,159 (GRCm39)	N1289K	probably benign	Het
Arhgef12	T	C	9: 42,897,880 (GRCm39)	S874G	probably damaging	Het
Ccdc166	T	C	15: 75,853,945 (GRCm39)	Q45R	possibly damaging	Het
Cdc45	C	T	16: 18,614,647 (GRCm39)	R205H	probably damaging	Het
Cdk14	A	G	5: 4,938,975 (GRCm39)	S388P	possibly damaging	Het
Chgb	A	T	2: 132,635,453 (GRCm39)	Q465L	possibly damaging	Het
Commd9	T	A	2: 101,729,220 (GRCm39)	W109R	probably damaging	Het
Cspg4b	G	A	13: 113,505,587 (GRCm39)	V2239I	probably benign	Het
Cyp2b9	T	C	7: 25,887,080 (GRCm39)	V163A	probably benign	Het
Dcpp2	T	A	17: 24,118,287 (GRCm39)	H27Q	possibly damaging	Het
Ddn	T	A	15: 98,704,347 (GRCm39)	E315V	possibly damaging	Het
Defb29	C	A	2: 152,380,868 (GRCm39)	C47F	probably damaging	Het
Dnah7b	T	C	1: 46,281,366 (GRCm39)	M2809T	possibly damaging	Het
Dock4	A	T	12: 40,795,744 (GRCm39)	I854F	probably damaging	Het
Dsg4	T	C	18: 20,591,541 (GRCm39)	Y427H	probably damaging	Het
E130114P18Rik	C	T	4: 97,578,907 (GRCm39)	A23T	unknown	Het
Flacc1	T	A	1: 58,706,045 (GRCm39)	K275*	probably null	Het
Gemin5	A	G	11: 58,016,113 (GRCm39)	S1297P	probably benign	Het
Gm10309	A	C	17: 86,806,161 (GRCm39)		probably benign	Het
Gpatch11	T	A	17: 79,148,663 (GRCm39)	S155R	possibly damaging	Het
Grin2b	C	A	6: 135,709,366 (GRCm39)	Q1393H	probably damaging	Het
Heatr5b	C	T	17: 79,081,142 (GRCm39)	C1370Y	probably damaging	Het
Hmcn2	C	T	2: 31,226,556 (GRCm39)	T177I	possibly damaging	Het
Ildr1	A	T	16: 36,529,981 (GRCm39)	I123F	probably damaging	Het
Kalrn	A	T	16: 34,083,023 (GRCm39)	V644D	probably damaging	Het
Kifap3	A	G	1: 163,607,440 (GRCm39)	M1V	probably null	Het
Klhl11	A	G	11: 100,354,942 (GRCm39)	L293P	probably damaging	Het
Klrc3	G	A	6: 129,618,513 (GRCm39)	S98L	probably benign	Het
Lrrc37	A	T	11: 103,511,586 (GRCm39)	H127Q	unknown	Het
Med12l	G	A	3: 59,156,143 (GRCm39)	M1220I	probably damaging	Het
Ms4a7	C	T	19: 11,303,166 (GRCm39)		probably null	Het
Mybpc2	A	G	7: 44,159,253 (GRCm39)	V599A	probably benign	Het
Naalad2	T	C	9: 18,258,815 (GRCm39)	N487D	probably benign	Het
Nat8f7	T	G	6: 85,684,805 (GRCm39)	S12R	probably benign	Het
Nefm	T	A	14: 68,357,515 (GRCm39)		probably benign	Het
Nlrp5	T	C	7: 23,117,626 (GRCm39)	V450A	probably damaging	Het
Nps	G	A	7: 134,870,376 (GRCm39)		probably null	Het
Or13c7d	A	G	4: 43,770,168 (GRCm39)	I281T	probably benign	Het
Or2ag16	C	A	7: 106,351,773 (GRCm39)	S274I	probably benign	Het
Or4a74	T	C	2: 89,440,083 (GRCm39)	Y121C	probably damaging	Het
Or4b13	T	A	2: 90,082,955 (GRCm39)	K126*	probably null	Het
Or5e1	T	C	7: 108,354,924 (GRCm39)	L287P	possibly damaging	Het
Or5h24	G	T	16: 58,918,665 (GRCm39)	P230Q	possibly damaging	Het
Or5p67	T	C	7: 107,922,017 (GRCm39)	N289D	probably damaging	Het
Oxct2a	C	A	4: 123,216,506 (GRCm39)	G292W	possibly damaging	Het
Pramel32	T	A	4: 88,547,647 (GRCm39)		probably benign	Het
Prr27	T	C	5: 87,998,744 (GRCm39)		probably benign	Het
Ptx3	T	C	3: 66,128,143 (GRCm39)	M68T	probably damaging	Het
Rufy1	A	G	11: 50,312,561 (GRCm39)	L131S	probably damaging	Het
Septin7	T	A	9: 25,197,986 (GRCm39)	I100N	possibly damaging	Het
Sgms2	T	C	3: 131,135,446 (GRCm39)	I143V	probably benign	Het
Slc25a34	A	G	4: 141,350,877 (GRCm39)	V44A	probably damaging	Het
Slc28a3	T	A	13: 58,710,968 (GRCm39)	D518V	probably damaging	Het
Slc6a7	C	T	18: 61,136,308 (GRCm39)		probably null	Het
Slco4a1	C	A	2: 180,113,028 (GRCm39)	A420D	possibly damaging	Het
Smap1	T	C	1: 23,888,471 (GRCm39)	T180A	probably benign	Het
Specc1l	T	C	10: 75,103,384 (GRCm39)	S920P	probably benign	Het
Tgtp2	A	G	11: 48,950,083 (GRCm39)	M163T	probably benign	Het
Tiam1	G	T	16: 89,662,280 (GRCm39)	Q613K	possibly damaging	Het
Vwa3b	A	G	1: 37,154,752 (GRCm39)	Y512C	probably damaging	Het
Wdfy3	T	A	5: 102,067,312 (GRCm39)	N1207Y	probably damaging	Het
Wdr17	C	T	8: 55,134,434 (GRCm39)	G349R	probably damaging	Het
Wdr70	A	G	15: 7,951,586 (GRCm39)	L417S	possibly damaging	Het
Wdr81	A	C	11: 75,341,722 (GRCm39)	S1182A	possibly damaging	Het
Zfp458	A	T	13: 67,405,256 (GRCm39)	C391*	probably null	Het
Zfp638	A	G	6: 83,953,396 (GRCm39)	E1167G	probably damaging	Het
Zfp763	T	A	17: 33,238,569 (GRCm39)	D192V	probably benign	Het
Zfp853	T	G	5: 143,274,624 (GRCm39)	Q332P	unknown	Het

Other mutations in Vsig10l

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01319:Vsig10l	APN	7	43,114,678 (GRCm39)	missense	probably damaging	1.00
IGL01390:Vsig10l	APN	7	43,115,889 (GRCm39)	missense	probably damaging	0.97
IGL02401:Vsig10l	APN	7	43,113,468 (GRCm39)	missense	probably damaging	1.00
IGL02404:Vsig10l	APN	7	43,113,171 (GRCm39)	missense	possibly damaging	0.85
IGL02514:Vsig10l	APN	7	43,113,338 (GRCm39)	missense	probably benign	0.02
IGL02636:Vsig10l	APN	7	43,113,002 (GRCm39)	missense	possibly damaging	0.53
IGL02805:Vsig10l	APN	7	43,114,666 (GRCm39)	missense	probably damaging	1.00
IGL02823:Vsig10l	APN	7	43,115,888 (GRCm39)	missense	probably damaging	1.00
IGL02827:Vsig10l	APN	7	43,114,293 (GRCm39)	missense	probably damaging	1.00
R0111:Vsig10l	UTSW	7	43,117,525 (GRCm39)	missense	probably damaging	0.97
R0394:Vsig10l	UTSW	7	43,114,879 (GRCm39)	missense	probably damaging	0.97
R0465:Vsig10l	UTSW	7	43,116,866 (GRCm39)	missense	probably damaging	1.00
R0632:Vsig10l	UTSW	7	43,113,561 (GRCm39)	missense	probably damaging	0.97
R1689:Vsig10l	UTSW	7	43,114,792 (GRCm39)	missense	possibly damaging	0.93
R1991:Vsig10l	UTSW	7	43,116,892 (GRCm39)	missense	possibly damaging	0.89
R2103:Vsig10l	UTSW	7	43,116,892 (GRCm39)	missense	possibly damaging	0.89
R2358:Vsig10l	UTSW	7	43,118,185 (GRCm39)	missense	probably benign	0.00
R3015:Vsig10l	UTSW	7	43,116,881 (GRCm39)	missense	possibly damaging	0.73
R4024:Vsig10l	UTSW	7	43,117,510 (GRCm39)	missense	probably benign	0.33
R4031:Vsig10l	UTSW	7	43,114,798 (GRCm39)	missense	probably damaging	1.00
R4807:Vsig10l	UTSW	7	43,113,173 (GRCm39)	missense	possibly damaging	0.53
R5020:Vsig10l	UTSW	7	43,114,741 (GRCm39)	nonsense	probably null
R5261:Vsig10l	UTSW	7	43,120,274 (GRCm39)	missense	probably damaging	1.00
R5317:Vsig10l	UTSW	7	43,114,247 (GRCm39)	missense	probably damaging	1.00
R5656:Vsig10l	UTSW	7	43,113,575 (GRCm39)	nonsense	probably null
R5842:Vsig10l	UTSW	7	43,118,396 (GRCm39)	missense	probably benign	0.15
R6012:Vsig10l	UTSW	7	43,117,439 (GRCm39)	missense	probably damaging	1.00
R6235:Vsig10l	UTSW	7	43,118,396 (GRCm39)	missense	probably benign	0.15
R6309:Vsig10l	UTSW	7	43,120,397 (GRCm39)	splice site	probably null
R6994:Vsig10l	UTSW	7	43,114,491 (GRCm39)	missense	possibly damaging	0.71
R7250:Vsig10l	UTSW	7	43,113,099 (GRCm39)	missense	probably benign
R7397:Vsig10l	UTSW	7	43,117,431 (GRCm39)	missense	probably damaging	1.00
R7767:Vsig10l	UTSW	7	43,113,141 (GRCm39)	missense	probably damaging	0.96
R7956:Vsig10l	UTSW	7	43,117,494 (GRCm39)	missense	probably benign
R8086:Vsig10l	UTSW	7	43,114,876 (GRCm39)	missense	possibly damaging	0.92
R8139:Vsig10l	UTSW	7	43,113,153 (GRCm39)	missense	probably benign	0.00
R8297:Vsig10l	UTSW	7	43,113,531 (GRCm39)	missense	possibly damaging	0.50
R8341:Vsig10l	UTSW	7	43,113,378 (GRCm39)	missense	probably damaging	1.00
R8519:Vsig10l	UTSW	7	43,114,326 (GRCm39)	missense	probably benign	0.33
R8925:Vsig10l	UTSW	7	43,116,020 (GRCm39)	missense	probably benign	0.41
R8927:Vsig10l	UTSW	7	43,116,020 (GRCm39)	missense	probably benign	0.41
R8948:Vsig10l	UTSW	7	43,117,623 (GRCm39)	missense	possibly damaging	0.53
R9157:Vsig10l	UTSW	7	43,112,948 (GRCm39)	missense
R9203:Vsig10l	UTSW	7	43,112,657 (GRCm39)	start codon destroyed	probably null
R9481:Vsig10l	UTSW	7	43,112,795 (GRCm39)	nonsense	probably null
X0028:Vsig10l	UTSW	7	43,112,788 (GRCm39)	utr 3 prime	probably benign
X0067:Vsig10l	UTSW	7	43,116,914 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TCTATATCCCTGGATCAGAGGAAG -3'
(R):5'- TTCGGACCTGGCAAGTGTAC -3'

Sequencing Primer
(F):5'- GAAGGACTGAGAGCTCTGATTCTG -3'
(R):5'- TGAGATGAGCAGCTGGTCC -3'

Posted On

2016-09-01