Mutagenetix > Incidental Mutation

Incidental Mutation 'R5427:Sppl2c'

426971

Institutional Source

Beutler Lab

Gene Symbol

Sppl2c

Ensembl Gene

ENSMUSG00000049506

Gene Name

signal peptide peptidase 2C

Synonyms

4933407P14Rik

MMRRC Submission

042993-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.107) question?

Stock #

R5427 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

104077153-104081989 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 104078693 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Isoleucine at position 498 (V498I)

Ref Sequence

ENSEMBL: ENSMUSP00000102613 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000059448] [ENSMUST00000107000]

AlphaFold

A2A6C4

Predicted Effect

probably benign
Transcript: ENSMUST00000059448
AA Change: V498I

PolyPhen 2 Score 0.013 (Sensitivity: 0.96; Specificity: 0.78)

SMART Domains

Protein: ENSMUSP00000091453
Gene: ENSMUSG00000049506
AA Change: V498I

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
Pfam:PA	62	169	1.8e-8	PFAM
transmembrane domain	191	213	N/A	INTRINSIC
low complexity region	220	237	N/A	INTRINSIC
PSN	256	528	1.08e-95	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000107000
AA Change: V498I

PolyPhen 2 Score 0.013 (Sensitivity: 0.96; Specificity: 0.78)

SMART Domains

Protein: ENSMUSP00000102613
Gene: ENSMUSG00000049506
AA Change: V498I

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
Pfam:PA	62	169	2.3e-8	PFAM
transmembrane domain	191	213	N/A	INTRINSIC
low complexity region	220	237	N/A	INTRINSIC
PSN	256	528	1.08e-95	SMART

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.3%
3x: 98.6%
10x: 97.3%
20x: 95.3%

Validation Efficiency

97% (58/60)

Allele List at MGI

Other mutations in this stock

Total: 56 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aaas	A	G	15: 102,248,385 (GRCm39)	V277A	possibly damaging	Het
Adcy7	G	A	8: 89,052,829 (GRCm39)		probably null	Het
Adgrg5	A	T	8: 95,661,730 (GRCm39)	D157V	probably benign	Het
Akap13	A	G	7: 75,378,617 (GRCm39)	N2090S	possibly damaging	Het
Alpi	T	C	1: 87,029,076 (GRCm39)	N33D	probably benign	Het
Anapc15	C	T	7: 101,547,810 (GRCm39)	P68L	probably damaging	Het
Ankrd34a	G	A	3: 96,504,837 (GRCm39)	G14R	probably damaging	Het
Anp32a	A	G	9: 62,284,598 (GRCm39)		probably benign	Het
Atg4b	G	C	1: 93,702,928 (GRCm39)	K86N	probably damaging	Het
Bbx	T	C	16: 50,100,860 (GRCm39)	T12A	probably benign	Het
Catsperg2	T	C	7: 29,414,275 (GRCm39)	T377A	possibly damaging	Het
Ccdc158	T	C	5: 92,796,821 (GRCm39)	Q505R	probably damaging	Het
Cep135	T	A	5: 76,786,049 (GRCm39)	S1051T	probably benign	Het
Cryab	A	G	9: 50,667,593 (GRCm39)	D109G	probably damaging	Het
Crym	A	C	7: 119,798,445 (GRCm39)		probably benign	Het
Csf2rb2	T	A	15: 78,173,111 (GRCm39)	S250C	probably damaging	Het
Diaph1	A	T	18: 38,023,648 (GRCm39)	V730E	unknown	Het
Eci3	G	T	13: 35,143,931 (GRCm39)	L65M	possibly damaging	Het
Erg28	T	C	12: 85,866,341 (GRCm39)	N46D	probably damaging	Het
Fam89b	A	G	19: 5,778,819 (GRCm39)	S127P	probably benign	Het
Fign	A	G	2: 63,809,342 (GRCm39)	Y643H	probably damaging	Het
Galk2	T	C	2: 125,788,741 (GRCm39)	V265A	probably benign	Het
Gclm	T	C	3: 122,059,976 (GRCm39)	V252A	probably damaging	Het
Git2	A	G	5: 114,868,389 (GRCm39)	S584P	possibly damaging	Het
Iqcf3	T	C	9: 106,421,059 (GRCm39)		probably null	Het
Kcnk3	A	G	5: 30,779,639 (GRCm39)	T230A	possibly damaging	Het
Mettl25b	T	C	3: 87,831,639 (GRCm39)		probably benign	Het
Myh10	T	C	11: 68,693,757 (GRCm39)	L1486P	probably damaging	Het
Myom2	C	A	8: 15,163,764 (GRCm39)	A1006E	probably benign	Het
Myt1l	G	A	12: 29,882,331 (GRCm39)	G509R	unknown	Het
Nampt	A	T	12: 32,884,914 (GRCm39)	H111L	probably benign	Het
Nid1	A	G	13: 13,658,268 (GRCm39)	Y671C	probably damaging	Het
Npy5r	G	A	8: 67,133,672 (GRCm39)	R374C	probably damaging	Het
Or10ag54	A	T	2: 87,099,858 (GRCm39)	K244N	probably benign	Het
Or5b123	A	T	19: 13,596,714 (GRCm39)	S20C	probably benign	Het
Palld	C	T	8: 62,003,106 (GRCm39)	C720Y	probably benign	Het
Pcsk6	C	T	7: 65,683,647 (GRCm39)	T606M	probably benign	Het
Pfas	T	C	11: 68,891,979 (GRCm39)	I176M	possibly damaging	Het
Pi4kb	A	G	3: 94,901,518 (GRCm39)	D395G	probably benign	Het
Plod3	A	T	5: 137,020,642 (GRCm39)	Y547F	probably damaging	Het
Plscr1l1	G	A	9: 92,234,649 (GRCm39)	C128Y	probably benign	Het
Pnpo	T	C	11: 96,834,633 (GRCm39)	Y21C	probably benign	Het
Rgs1	A	T	1: 144,122,018 (GRCm39)	C118*	probably null	Het
Slc22a27	A	G	19: 7,856,753 (GRCm39)		probably null	Het
Sntb1	C	G	15: 55,506,191 (GRCm39)	G461R	probably damaging	Het
Stim2	A	T	5: 54,268,281 (GRCm39)	I448F	possibly damaging	Het
Sulf1	A	T	1: 12,867,136 (GRCm39)	T107S	possibly damaging	Het
Tenm3	A	G	8: 48,689,599 (GRCm39)	V1996A	probably damaging	Het
Timm23	G	A	14: 31,911,103 (GRCm39)	T171I	possibly damaging	Het
Tssk2	A	G	16: 17,716,729 (GRCm39)	D44G	probably damaging	Het
Vmn2r28	A	T	7: 5,489,376 (GRCm39)	Y488N	probably damaging	Het
Zbed6	A	G	1: 133,585,333 (GRCm39)	V668A	possibly damaging	Het
Zbtb48	A	G	4: 152,105,108 (GRCm39)	F518S	probably damaging	Het
Zfp709	A	G	8: 72,642,976 (GRCm39)	E135G	probably benign	Het
Zfp788	G	A	7: 41,299,076 (GRCm39)	V571I	possibly damaging	Het
Zfp963	A	G	8: 70,196,106 (GRCm39)	S116P	probably benign	Het

Other mutations in Sppl2c

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00814:Sppl2c	APN	11	104,077,805 (GRCm39)	missense	possibly damaging	0.83
IGL02326:Sppl2c	APN	11	104,078,099 (GRCm39)	missense	probably benign	0.27
IGL02479:Sppl2c	APN	11	104,077,763 (GRCm39)	missense	probably benign
H8786:Sppl2c	UTSW	11	104,077,691 (GRCm39)	missense	probably benign	0.04
R0083:Sppl2c	UTSW	11	104,077,358 (GRCm39)	missense	probably benign	0.00
R1625:Sppl2c	UTSW	11	104,077,995 (GRCm39)	missense	probably damaging	0.98
R1913:Sppl2c	UTSW	11	104,078,715 (GRCm39)	missense	probably benign	0.15
R2037:Sppl2c	UTSW	11	104,077,307 (GRCm39)	missense	probably benign	0.23
R2869:Sppl2c	UTSW	11	104,078,141 (GRCm39)	missense	probably benign	0.21
R2869:Sppl2c	UTSW	11	104,078,141 (GRCm39)	missense	probably benign	0.21
R2871:Sppl2c	UTSW	11	104,078,141 (GRCm39)	missense	probably benign	0.21
R2871:Sppl2c	UTSW	11	104,078,141 (GRCm39)	missense	probably benign	0.21
R2873:Sppl2c	UTSW	11	104,078,141 (GRCm39)	missense	probably benign	0.21
R3009:Sppl2c	UTSW	11	104,078,141 (GRCm39)	missense	probably benign	0.21
R3010:Sppl2c	UTSW	11	104,078,141 (GRCm39)	missense	probably benign	0.21
R3011:Sppl2c	UTSW	11	104,078,141 (GRCm39)	missense	probably benign	0.21
R4698:Sppl2c	UTSW	11	104,079,141 (GRCm39)	missense	probably benign	0.21
R4718:Sppl2c	UTSW	11	104,079,141 (GRCm39)	missense	probably benign	0.21
R4841:Sppl2c	UTSW	11	104,078,478 (GRCm39)	missense	probably benign	0.06
R4842:Sppl2c	UTSW	11	104,078,478 (GRCm39)	missense	probably benign	0.06
R5248:Sppl2c	UTSW	11	104,077,407 (GRCm39)	missense	possibly damaging	0.88
R5288:Sppl2c	UTSW	11	104,078,127 (GRCm39)	missense	possibly damaging	0.68
R5300:Sppl2c	UTSW	11	104,077,901 (GRCm39)	missense	possibly damaging	0.52
R5384:Sppl2c	UTSW	11	104,078,127 (GRCm39)	missense	possibly damaging	0.68
R5386:Sppl2c	UTSW	11	104,078,127 (GRCm39)	missense	possibly damaging	0.68
R5452:Sppl2c	UTSW	11	104,078,126 (GRCm39)	missense	probably benign
R5796:Sppl2c	UTSW	11	104,078,619 (GRCm39)	missense	probably benign	0.00
R6112:Sppl2c	UTSW	11	104,077,963 (GRCm39)	missense	probably benign	0.00
R6452:Sppl2c	UTSW	11	104,079,017 (GRCm39)	missense	probably benign	0.01
R6476:Sppl2c	UTSW	11	104,077,595 (GRCm39)	missense	probably benign
R7368:Sppl2c	UTSW	11	104,078,430 (GRCm39)	missense	probably damaging	0.99
R7871:Sppl2c	UTSW	11	104,079,342 (GRCm39)	splice site	probably null
R7896:Sppl2c	UTSW	11	104,077,956 (GRCm39)	missense	possibly damaging	0.94
R7991:Sppl2c	UTSW	11	104,078,640 (GRCm39)	missense	possibly damaging	0.94
R7991:Sppl2c	UTSW	11	104,078,189 (GRCm39)	missense	probably benign	0.00
R8035:Sppl2c	UTSW	11	104,078,192 (GRCm39)	missense	probably benign	0.01
R8221:Sppl2c	UTSW	11	104,077,710 (GRCm39)	missense	probably damaging	0.99
R8243:Sppl2c	UTSW	11	104,078,687 (GRCm39)	missense	probably damaging	1.00
R8462:Sppl2c	UTSW	11	104,077,532 (GRCm39)	missense	possibly damaging	0.47
R8474:Sppl2c	UTSW	11	104,078,963 (GRCm39)	missense	probably benign	0.00
R9368:Sppl2c	UTSW	11	104,078,561 (GRCm39)	missense	probably damaging	1.00
R9507:Sppl2c	UTSW	11	104,078,153 (GRCm39)	missense	probably benign	0.00
R9672:Sppl2c	UTSW	11	104,077,344 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- TACCAATGGTGCTCAAGGTG -3'
(R):5'- CTTCATCTTGGAGCCCACAG -3'

Sequencing Primer
(F):5'- TCAAGGTGCCCCGGCTAAG -3'
(R):5'- GCCCACAGCAGAGGCAATG -3'

Posted On

2016-09-01