Incidental Mutation 'R5442:Commd4'
ID427233
Institutional Source Beutler Lab
Gene Symbol Commd4
Ensembl Gene ENSMUSG00000032299
Gene NameCOMM domain containing 4
Synonyms
MMRRC Submission 043007-MU
Accession Numbers
Is this an essential gene? Possibly non essential (E-score: 0.471) question?
Stock #R5442 (G1)
Quality Score225
Status Not validated
Chromosome9
Chromosomal Location57155035-57158331 bp(-) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) A to G at 57156806 bp
ZygosityHeterozygous
Amino Acid Change Valine to Alanine at position 37 (V37A)
Ref Sequence ENSEMBL: ENSMUSP00000069078 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000065358] [ENSMUST00000214097] [ENSMUST00000214174]
Predicted Effect possibly damaging
Transcript: ENSMUST00000065358
AA Change: V37A

PolyPhen 2 Score 0.787 (Sensitivity: 0.85; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000069078
Gene: ENSMUSG00000032299
AA Change: V37A

DomainStartEndE-ValueType
Pfam:HCaRG 21 197 5.9e-46 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000213161
Predicted Effect unknown
Transcript: ENSMUST00000213580
AA Change: V31A
Predicted Effect noncoding transcript
Transcript: ENSMUST00000214072
Predicted Effect probably benign
Transcript: ENSMUST00000214097
Predicted Effect probably benign
Transcript: ENSMUST00000214174
Predicted Effect noncoding transcript
Transcript: ENSMUST00000214212
Predicted Effect noncoding transcript
Transcript: ENSMUST00000214325
Predicted Effect probably benign
Transcript: ENSMUST00000214640
Predicted Effect unknown
Transcript: ENSMUST00000215013
AA Change: V36A
Predicted Effect noncoding transcript
Transcript: ENSMUST00000215500
Predicted Effect noncoding transcript
Transcript: ENSMUST00000216031
Predicted Effect unknown
Transcript: ENSMUST00000217018
AA Change: V34A
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 96.9%
  • 20x: 94.3%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 37 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aatk A G 11: 120,018,768 M114T probably benign Het
Ablim3 A T 18: 61,857,225 probably null Het
Adcy10 A G 1: 165,513,140 D238G probably benign Het
Astn2 G T 4: 65,581,786 S955R possibly damaging Het
Casc3 A G 11: 98,821,471 E112G probably damaging Het
Cetn4 C T 3: 37,309,945 V39I probably benign Het
Dyrk2 T C 10: 118,860,738 Q205R possibly damaging Het
Gal3st4 A G 5: 138,265,780 V319A possibly damaging Het
Gm14085 A G 2: 122,486,869 N36S probably benign Het
Inpp5d G A 1: 87,718,066 A1058T probably benign Het
Lpin3 A G 2: 160,905,016 Y781C probably damaging Het
Lrat C T 3: 82,903,220 V165M probably damaging Het
Ltbr G A 6: 125,312,794 R146W probably damaging Het
Nlrp6 T C 7: 140,922,190 S142P probably benign Het
Oas1a T C 5: 120,897,206 T349A probably benign Het
Olfr1033 T C 2: 86,041,951 V212A probably benign Het
Olfr110 A T 17: 37,499,439 I263F probably damaging Het
Olfr671 A T 7: 104,975,228 F252L possibly damaging Het
Olfr898 T A 9: 38,349,862 S260T probably benign Het
Pakap C A 4: 57,637,876 P18Q probably null Het
Pcdha2 T C 18: 36,939,862 V182A probably benign Het
Phactr3 A G 2: 178,142,461 D26G probably benign Het
Phrf1 G A 7: 141,240,937 R159H probably damaging Het
R3hdm4 C T 10: 79,912,458 E162K possibly damaging Het
Rab3ip T C 10: 116,918,848 T268A probably benign Het
Rapgef3 T C 15: 97,758,861 D299G probably damaging Het
Rem1 A G 2: 152,628,057 probably null Het
Syne1 A G 10: 5,343,473 M1286T probably benign Het
Thsd7a T C 6: 12,748,800 T52A probably benign Het
Tmem135 A T 7: 89,144,664 F390Y probably damaging Het
Trio T C 15: 27,856,194 D696G probably benign Het
Ttll11 T C 2: 35,903,123 *191W probably null Het
Ubr4 A G 4: 139,407,772 D805G probably damaging Het
Usp9y A G Y: 1,336,467 I1469T possibly damaging Het
Vmn1r70 G T 7: 10,633,950 A122S possibly damaging Het
Vmn2r78 G T 7: 86,920,122 L74F possibly damaging Het
Wdfy3 T C 5: 101,896,559 E1860G probably benign Het
Other mutations in Commd4
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01388:Commd4 APN 9 57155989 splice site probably benign
R0720:Commd4 UTSW 9 57155434 missense probably benign 0.00
R4972:Commd4 UTSW 9 57155448 missense probably benign 0.00
R5696:Commd4 UTSW 9 57156215 missense possibly damaging 0.77
Z1088:Commd4 UTSW 9 57156256 missense probably benign 0.03
Z1177:Commd4 UTSW 9 57157131 missense probably damaging 0.99
Predicted Primers PCR Primer
(F):5'- CTGTGCTAAGAATGGGCTGG -3'
(R):5'- AAGTGCACTGGTTTACTTAGGG -3'

Sequencing Primer
(F):5'- CTAAGAATGGGCTGGGGCTAG -3'
(R):5'- AGATTGGGACTGGGAGCTG -3'
Posted On2016-09-01