Incidental Mutation 'R5431:Cds2'
| ID |
428035 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Cds2
|
| Ensembl Gene |
ENSMUSG00000058793 |
| Gene Name |
CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2 |
| Synonyms |
5730460C18Rik, 5730450N06Rik, D2Wsu127e |
| MMRRC Submission |
042847-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R5431 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
2 |
| Chromosomal Location |
132263148-132312050 bp(+) (GRCm38) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to A
at 132302170 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Serine to Threonine
at position 289
(S289T)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000086886
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000089461]
[ENSMUST00000103181]
[ENSMUST00000147456]
|
| AlphaFold |
Q99L43 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000089461
AA Change: S289T
PolyPhen 2
Score 0.281 (Sensitivity: 0.91; Specificity: 0.88)
|
| SMART Domains |
Protein: ENSMUSP00000086886
Gene: ENSMUSG00000058793
AA Change: S289T
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:CTP_transf_1
|
52 |
382 |
5e-90 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000103181
AA Change: S306T
PolyPhen 2
Score 0.071 (Sensitivity: 0.94; Specificity: 0.84)
|
| SMART Domains |
Protein: ENSMUSP00000099470
Gene: ENSMUSG00000058793
AA Change: S306T
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:CTP_transf_1
|
69 |
399 |
7.6e-90 |
PFAM |
|
| Predicted Effect |
unknown
Transcript: ENSMUST00000138194
AA Change: S32T
|
| SMART Domains |
Protein: ENSMUSP00000121769
Gene: ENSMUSG00000058793
AA Change: S32T
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:CTP_transf_1
|
3 |
126 |
8.7e-34 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000147456
|
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.2%
- 20x: 95.1%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Breakdown products of phosphoinositides are ubiquitous second messengers that function downstream of many G protein-coupled receptors and tyrosine kinases regulating cell growth, calcium metabolism, and protein kinase C activity. This gene encodes an enzyme which regulates the amount of phosphatidylinositol available for signaling by catalyzing the conversion of phosphatidic acid to CDP-diacylglycerol. This enzyme is an integral membrane protein localized to two subcellular domains, the matrix side of the inner mitochondrial membrane where it is thought to be involved in the synthesis of phosphatidylglycerol and cardiolipin and the cytoplasmic side of the endoplasmic reticulum where it functions in phosphatidylinositol biosynthesis. Two genes encoding this enzyme have been identified in humans, one mapping to human chromosome 4q21 and a second to 20p13. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for disruptions in this gene display a lethal phenotype. Heterozygotes show a distorted lymphocyte distribution and enhanced sensorimotor gating. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 51 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 2310061N02Rik |
T |
C |
16: 88,707,538 (GRCm38) |
S124G |
possibly damaging |
Het |
| 4921539E11Rik |
T |
C |
4: 103,270,848 (GRCm38) |
T27A |
probably benign |
Het |
| Aspg |
T |
A |
12: 112,123,412 (GRCm38) |
N461K |
probably benign |
Het |
| B4galnt3 |
T |
A |
6: 120,218,967 (GRCm38) |
T300S |
probably damaging |
Het |
| BC035044 |
A |
G |
6: 128,885,007 (GRCm38) |
|
probably benign |
Het |
| Bmp5 |
C |
T |
9: 75,893,709 (GRCm38) |
P374S |
probably damaging |
Het |
| C330018D20Rik |
A |
T |
18: 56,957,856 (GRCm38) |
F78L |
probably benign |
Het |
| Cerkl |
C |
T |
2: 79,341,335 (GRCm38) |
C393Y |
probably damaging |
Het |
| Ciita |
C |
T |
16: 10,523,792 (GRCm38) |
R1020C |
probably damaging |
Het |
| Dcaf13 |
C |
A |
15: 39,123,224 (GRCm38) |
D130E |
probably benign |
Het |
| Dnal4 |
C |
T |
15: 79,762,447 (GRCm38) |
G50R |
probably damaging |
Het |
| Elfn1 |
A |
G |
5: 139,971,568 (GRCm38) |
N109S |
probably damaging |
Het |
| Ep400 |
A |
G |
5: 110,676,554 (GRCm38) |
V2435A |
unknown |
Het |
| Fam178b |
T |
C |
1: 36,632,485 (GRCm38) |
E185G |
probably damaging |
Het |
| Fam227b |
C |
A |
2: 126,126,931 (GRCm38) |
L74F |
probably benign |
Het |
| Fam92b |
C |
A |
8: 120,167,303 (GRCm38) |
|
probably null |
Het |
| Fgfr4 |
G |
A |
13: 55,156,651 (GRCm38) |
V138I |
probably benign |
Het |
| Flnc |
A |
G |
6: 29,456,384 (GRCm38) |
I2161V |
possibly damaging |
Het |
| Frmd5 |
T |
C |
2: 121,562,909 (GRCm38) |
N235S |
probably damaging |
Het |
| Gad1-ps |
G |
A |
10: 99,445,147 (GRCm38) |
|
noncoding transcript |
Het |
| Ggt6 |
A |
G |
11: 72,437,738 (GRCm38) |
T355A |
possibly damaging |
Het |
| Gm14393 |
G |
A |
2: 175,063,876 (GRCm38) |
T41I |
probably damaging |
Het |
| Gpr151 |
A |
C |
18: 42,578,867 (GRCm38) |
S249A |
probably damaging |
Het |
| Gpr152 |
T |
A |
19: 4,143,747 (GRCm38) |
V429D |
probably benign |
Het |
| Grm7 |
G |
A |
6: 111,358,426 (GRCm38) |
M599I |
probably benign |
Het |
| Hdac4 |
T |
A |
1: 91,972,790 (GRCm38) |
R54* |
probably null |
Het |
| Ice1 |
A |
G |
13: 70,592,650 (GRCm38) |
L2146S |
probably damaging |
Het |
| Igfbpl1 |
C |
T |
4: 45,815,588 (GRCm38) |
V183I |
probably benign |
Het |
| Kel |
G |
A |
6: 41,698,420 (GRCm38) |
S299F |
probably benign |
Het |
| Kif14 |
T |
C |
1: 136,496,695 (GRCm38) |
I1016T |
possibly damaging |
Het |
| Lhx3 |
T |
C |
2: 26,201,118 (GRCm38) |
D395G |
probably damaging |
Het |
| Micu1 |
T |
C |
10: 59,750,521 (GRCm38) |
Y140H |
possibly damaging |
Het |
| Myt1l |
G |
A |
12: 29,832,332 (GRCm38) |
G509R |
unknown |
Het |
| Nbn |
C |
T |
4: 15,986,593 (GRCm38) |
H665Y |
probably benign |
Het |
| Pkhd1 |
G |
T |
1: 20,117,836 (GRCm38) |
T3416K |
probably benign |
Het |
| Plxnb1 |
T |
C |
9: 109,100,772 (GRCm38) |
F232S |
probably damaging |
Het |
| Pus7l |
T |
C |
15: 94,529,486 (GRCm38) |
N472D |
probably damaging |
Het |
| Rfx1 |
C |
T |
8: 84,082,720 (GRCm38) |
Q225* |
probably null |
Het |
| Rnase2a |
T |
C |
14: 51,255,563 (GRCm38) |
Y115C |
possibly damaging |
Het |
| Ryr1 |
T |
A |
7: 29,109,812 (GRCm38) |
D386V |
probably benign |
Het |
| Sfi1 |
A |
ATCTTCCCAAAGCCAGTGC |
11: 3,153,384 (GRCm38) |
|
probably benign |
Homo |
| Sgcz |
T |
A |
8: 37,639,984 (GRCm38) |
T125S |
probably damaging |
Het |
| Sntb1 |
C |
G |
15: 55,642,795 (GRCm38) |
G461R |
probably damaging |
Het |
| Syt2 |
A |
G |
1: 134,740,957 (GRCm38) |
S36G |
probably benign |
Het |
| Tcaf3 |
A |
G |
6: 42,597,185 (GRCm38) |
L31P |
probably damaging |
Het |
| Tenm3 |
C |
A |
8: 48,367,377 (GRCm38) |
E142* |
probably null |
Het |
| Tgfbr2 |
G |
T |
9: 116,131,601 (GRCm38) |
S94R |
probably damaging |
Het |
| Vmn2r12 |
A |
G |
5: 109,091,818 (GRCm38) |
I293T |
probably damaging |
Het |
| Wrap73 |
G |
A |
4: 154,145,274 (GRCm38) |
R34Q |
probably damaging |
Het |
| Zc3h14 |
A |
G |
12: 98,780,065 (GRCm38) |
D511G |
possibly damaging |
Het |
| Zcchc11 |
T |
A |
4: 108,491,412 (GRCm38) |
I297N |
probably damaging |
Het |
|
| Other mutations in Cds2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00433:Cds2
|
APN |
2 |
132,297,293 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL00434:Cds2
|
APN |
2 |
132,293,351 (GRCm38) |
missense |
probably damaging |
0.99 |
|
IGL00771:Cds2
|
APN |
2 |
132,304,352 (GRCm38) |
splice site |
probably benign |
|
|
IGL00984:Cds2
|
APN |
2 |
132,298,521 (GRCm38) |
missense |
probably benign |
0.02 |
|
IGL02041:Cds2
|
APN |
2 |
132,294,443 (GRCm38) |
missense |
possibly damaging |
0.94 |
|
sugarless
|
UTSW |
2 |
132,298,483 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0045:Cds2
|
UTSW |
2 |
132,305,155 (GRCm38) |
missense |
possibly damaging |
0.67 |
|
R0045:Cds2
|
UTSW |
2 |
132,305,155 (GRCm38) |
missense |
possibly damaging |
0.67 |
|
R0452:Cds2
|
UTSW |
2 |
132,298,479 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R0455:Cds2
|
UTSW |
2 |
132,285,967 (GRCm38) |
critical splice donor site |
probably null |
|
|
R0593:Cds2
|
UTSW |
2 |
132,297,376 (GRCm38) |
unclassified |
probably benign |
|
|
R0831:Cds2
|
UTSW |
2 |
132,285,967 (GRCm38) |
critical splice donor site |
probably null |
|
|
R1053:Cds2
|
UTSW |
2 |
132,305,260 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1669:Cds2
|
UTSW |
2 |
132,295,519 (GRCm38) |
splice site |
probably null |
|
|
R1740:Cds2
|
UTSW |
2 |
132,302,213 (GRCm38) |
missense |
possibly damaging |
0.63 |
|
R1859:Cds2
|
UTSW |
2 |
132,302,195 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4125:Cds2
|
UTSW |
2 |
132,297,271 (GRCm38) |
missense |
probably benign |
0.00 |
|
R4126:Cds2
|
UTSW |
2 |
132,297,271 (GRCm38) |
missense |
probably benign |
0.00 |
|
R4128:Cds2
|
UTSW |
2 |
132,297,271 (GRCm38) |
missense |
probably benign |
0.00 |
|
R4352:Cds2
|
UTSW |
2 |
132,263,445 (GRCm38) |
start codon destroyed |
probably null |
0.37 |
|
R4467:Cds2
|
UTSW |
2 |
132,294,446 (GRCm38) |
nonsense |
probably null |
|
|
R4698:Cds2
|
UTSW |
2 |
132,304,953 (GRCm38) |
missense |
probably damaging |
0.97 |
|
R4704:Cds2
|
UTSW |
2 |
132,300,602 (GRCm38) |
nonsense |
probably null |
|
|
R4917:Cds2
|
UTSW |
2 |
132,298,478 (GRCm38) |
missense |
probably damaging |
0.98 |
|
R5070:Cds2
|
UTSW |
2 |
132,302,088 (GRCm38) |
nonsense |
probably null |
|
|
R5199:Cds2
|
UTSW |
2 |
132,298,483 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5704:Cds2
|
UTSW |
2 |
132,293,329 (GRCm38) |
missense |
probably benign |
0.01 |
|
R5858:Cds2
|
UTSW |
2 |
132,302,113 (GRCm38) |
missense |
probably benign |
0.00 |
|
R5946:Cds2
|
UTSW |
2 |
132,297,248 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5954:Cds2
|
UTSW |
2 |
132,297,271 (GRCm38) |
missense |
probably benign |
0.00 |
|
R7195:Cds2
|
UTSW |
2 |
132,293,284 (GRCm38) |
missense |
probably benign |
0.28 |
|
R7234:Cds2
|
UTSW |
2 |
132,304,480 (GRCm38) |
critical splice donor site |
probably null |
|
|
R7413:Cds2
|
UTSW |
2 |
132,293,315 (GRCm38) |
missense |
probably benign |
0.03 |
|
R7983:Cds2
|
UTSW |
2 |
132,263,510 (GRCm38) |
splice site |
probably null |
|
|
R9036:Cds2
|
UTSW |
2 |
132,297,694 (GRCm38) |
critical splice donor site |
probably null |
|
|
| Predicted Primers |
PCR Primer
(F):5'- AGAGTCATGGCCCAATCAGG -3'
(R):5'- TTACTCAGTAAGCAGGATCCTCTAGG -3'
Sequencing Primer
(F):5'- TCATGGCCCAATCAGGTGTCG -3'
(R):5'- TCCTCTAGGAATCCACACAATGTG -3'
|
| Posted On |
2016-09-01 |
Incidental Mutation