Mutagenetix > Incidental Mutations

Incidental Mutation 'R5435:H2-Q6'

428297

Institutional Source

Beutler Lab

Gene Symbol

H2-Q6

Ensembl Gene

ENSMUSG00000073409

Gene Name

histocompatibility 2, Q region locus 6

Synonyms

0610037M15Rik, Qa6, H-2Q6, Qa-6

MMRRC Submission

043000-MU

Accession Numbers

Is this an essential gene?

Possibly essential (E-score: 0.543) question?

Stock #

R5435 (G1)

Quality Score

121

Status

Validated

Chromosome

Chromosomal Location

35424850-35430055 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 35425685 bp

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 150 (D150G)

Ref Sequence

ENSEMBL: ENSMUSP00000134550 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000113879] [ENSMUST00000174699]

Predicted Effect

probably damaging
Transcript: ENSMUST00000113879
AA Change: D150G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000109511
Gene: ENSMUSG00000073409
AA Change: D150G

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
Pfam:MHC_I	22	200	2.1e-92	PFAM
IGc1	219	290	7.68e-23	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000174699
AA Change: D150G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000134550
Gene: ENSMUSG00000073409
AA Change: D150G

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
Pfam:MHC_I	22	200	1.1e-93	PFAM
IGc1	219	290	7.68e-23	SMART

Meta Mutation Damage Score

0.4376

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.1%
20x: 94.9%

Validation Efficiency

100% (74/74)

MGI Phenotype

PHENOTYPE: This locus controls a lymph node and splenic lymphocyte antigen detected by BALB/cBy anti-ORA1-a tumor antibody. The strain distribution for presence/absence of antigen varies widely among inbred strains. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310035C23Rik	T	A	1: 105,741,250		probably benign	Het
3425401B19Rik	A	G	14: 32,661,456	F851L	probably benign	Het
Abca17	C	T	17: 24,267,614	V1480I	possibly damaging	Het
Acsbg1	G	T	9: 54,615,869	Y491*	probably null	Het
Acsf3	T	A	8: 122,780,281	N104K	probably damaging	Het
Adam23	T	C	1: 63,546,453	Y400H	possibly damaging	Het
Adgra3	G	A	5: 49,990,126	T524M	probably damaging	Het
Aff1	G	A	5: 103,754,332		probably benign	Het
Anxa9	T	C	3: 95,297,250	Y321C	probably damaging	Het
Ap1g1	T	A	8: 109,838,920	Y329N	probably damaging	Het
Aph1c	A	T	9: 66,834,501	I33N	possibly damaging	Het
B3galnt2	A	G	13: 13,996,990	E491G	probably benign	Het
Bdh1	C	T	16: 31,456,657	R235C	probably damaging	Het
Ccar2	A	G	14: 70,139,327	L856P	probably damaging	Het
Ccdc107	A	T	4: 43,493,519	D30V	probably damaging	Het
Ccdc116	G	T	16: 17,142,762	H64N	probably benign	Het
Ccl12	T	C	11: 82,103,175	I86T	possibly damaging	Het
Col2a1	T	C	15: 98,000,510		probably benign	Het
Col4a4	T	A	1: 82,454,007	I1519F	unknown	Het
Ddx19b	T	C	8: 111,008,826	Q416R	possibly damaging	Het
Dnah6	T	A	6: 73,060,138	M3374L	probably benign	Het
Dnajc6	A	T	4: 101,606,610	I119F	probably damaging	Het
Ensa	C	A	3: 95,622,458		probably benign	Het
Fbxo4	C	T	15: 3,965,792	V357I	possibly damaging	Het
Fkbpl	G	A	17: 34,645,329	A24T	probably benign	Het
Foxf1	G	A	8: 121,084,492	G32S	probably damaging	Het
Gls2	G	A	10: 128,195,126		probably benign	Het
Gm13599	T	A	2: 67,396,152		noncoding transcript	Het
Gmnn	A	G	13: 24,752,101	S197P	probably benign	Het
Guf1	A	T	5: 69,563,169	H324L	probably benign	Het
Herc3	T	A	6: 58,855,806	L152Q	probably damaging	Het
Hnrnpul2	T	G	19: 8,820,318	S13A	probably benign	Het
Ighv5-4	A	G	12: 113,597,663	F46L	probably benign	Het
Kank1	T	G	19: 25,411,143	S727A	probably benign	Het
Kcnma1	A	T	14: 23,528,404	Y201*	probably null	Het
Lyst	A	T	13: 13,777,064	H3750L	possibly damaging	Het
Mettl25	A	G	10: 105,779,586		probably null	Het
Mpdz	A	G	4: 81,283,487		probably benign	Het
Myh9	C	T	15: 77,769,609	V1280I	probably benign	Het
Neto1	A	T	18: 86,398,263	T32S	probably benign	Het
Nol7	C	A	13: 43,401,372	H187Q	possibly damaging	Het
Olfr992	T	A	2: 85,400,470	N21I	probably benign	Het
Pcdha8	A	G	18: 36,993,599	D378G	probably damaging	Het
Peak1	A	G	9: 56,206,486	S694P	probably damaging	Het
Pih1d1	T	A	7: 45,156,272		probably null	Het
Pik3c2g	T	G	6: 139,715,855		probably null	Het
Prkar2a	A	G	9: 108,740,483	R247G	probably damaging	Het
Psg26	A	G	7: 18,478,473	I319T	possibly damaging	Het
R3hdm4	C	T	10: 79,912,458	E162K	possibly damaging	Het
Rasa3	T	C	8: 13,631,811	E46G	possibly damaging	Het
Rbbp5	T	A	1: 132,494,275	H304Q	probably damaging	Het
Scn1a	T	A	2: 66,273,534	E1783V	probably damaging	Het
Stag1	A	G	9: 100,953,550	N151S	probably benign	Het
Tbc1d32	C	A	10: 56,040,150	A1191S	probably damaging	Het
Tchh	C	A	3: 93,443,672	R140S	possibly damaging	Het
Trank1	A	G	9: 111,391,890	Y2565C	probably benign	Het
Ttn	A	T	2: 76,914,358	V5449D	probably damaging	Het
Tubgcp2	G	A	7: 139,996,072	P893S	possibly damaging	Het
Wdfy4	A	G	14: 33,020,311	F2325S	probably damaging	Het
Wdr35	A	G	12: 8,989,951	D352G	probably benign	Het
Wee1	TCCCC	TCCC	7: 110,124,569		probably null	Het
Ypel3	A	G	7: 126,775,788		probably benign	Het
Zan	T	A	5: 137,403,762	T4023S	unknown	Het
Zfp735	T	A	11: 73,712,113	C628S	possibly damaging	Het

Other mutations in H2-Q6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02505:H2-Q6	APN	17	35425176	missense	probably benign	0.06
PIT4508001:H2-Q6	UTSW	17	35425820	missense	probably damaging	1.00
R0499:H2-Q6	UTSW	17	35425203	missense	probably damaging	0.98
R2426:H2-Q6	UTSW	17	35424937	missense	probably benign	0.06
R3236:H2-Q6	UTSW	17	35425700	missense	probably damaging	0.99
R3237:H2-Q6	UTSW	17	35425700	missense	probably damaging	0.99
R3810:H2-Q6	UTSW	17	35425781	missense	probably damaging	1.00
R3827:H2-Q6	UTSW	17	35425679	missense	probably damaging	1.00
R3932:H2-Q6	UTSW	17	35425566	splice site	probably benign
R4030:H2-Q6	UTSW	17	35425816	missense	probably benign	0.00
R4529:H2-Q6	UTSW	17	35425844	missense	probably null	1.00
R4558:H2-Q6	UTSW	17	35428315	missense	probably benign	0.00
R5100:H2-Q6	UTSW	17	35425320	missense	probably benign	0.00
R5455:H2-Q6	UTSW	17	35424884	missense	unknown
R5724:H2-Q6	UTSW	17	35425652	missense	probably damaging	1.00
R6383:H2-Q6	UTSW	17	35428383	critical splice donor site	probably null
R6752:H2-Q6	UTSW	17	35428127	missense	probably damaging	0.96
R6853:H2-Q6	UTSW	17	35428359	makesense	probably null
R7421:H2-Q6	UTSW	17	35425228	missense	possibly damaging	0.94
R7558:H2-Q6	UTSW	17	35425619	missense	probably benign
R7762:H2-Q6	UTSW	17	35428101	missense	probably benign	0.01
X0057:H2-Q6	UTSW	17	35425593	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- CCTTTCAGTTTGGAGGAGTCC -3'
(R):5'- TCTTCTTCCCCAGGACTGAG -3'

Sequencing Primer
(F):5'- GAGGAGTCCGCGGTGGG -3'
(R):5'- AGAGGGAGGAGCTGCCC -3'

Posted On

2016-09-01