Mutagenetix > Incidental Mutation

Incidental Mutation 'R5369:Scara5'

429569

Institutional Source

Beutler Lab

Gene Symbol

Scara5

Ensembl Gene

ENSMUSG00000022032

Gene Name

scavenger receptor class A, member 5

Synonyms

4932433F15Rik, 4933425F03Rik

MMRRC Submission

042946-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.093) question?

Stock #

R5369 (G1)

Quality Score

217

Status

Validated

Chromosome

Chromosomal Location

65666403-65764826 bp(+) (GRCm38)

Type of Mutation

frame shift

DNA Base Change (assembly)

CG to C at 65759662 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000022610 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022610]

AlphaFold

Q8K299

Predicted Effect

probably null
Transcript: ENSMUST00000022610

SMART Domains

Protein: ENSMUSP00000022610
Gene: ENSMUSG00000022032

Domain	Start	End	E-Value	Type
transmembrane domain	60	82	N/A	INTRINSIC
Pfam:Collagen	304	357	1.8e-8	PFAM
Pfam:Collagen	327	383	1.1e-8	PFAM
SR	389	489	5.5e-56	SMART

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.4%
20x: 95.6%

Validation Efficiency

99% (77/78)

MGI Phenotype

PHENOTYPE: Homozygous deletion of this gene results in decreased male fertility and lymphocytic infiltration of the stroma of various tissues, particularly in the lungs. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 74 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2210010C04Rik	T	A	6: 41,033,006	R131S	probably benign	Het
A2ml1	T	C	6: 128,568,833	T444A	probably damaging	Het
A330070K13Rik	G	A	5: 130,379,091		probably benign	Het
Abcb8	C	T	5: 24,400,139	R108C	possibly damaging	Het
Acbd5	T	A	2: 23,112,510	L508Q	probably damaging	Het
Asb15	T	C	6: 24,562,564	V175A	probably benign	Het
B3galnt2	T	C	13: 13,994,425		probably null	Het
BC024139	A	C	15: 76,120,222	S711R	probably benign	Het
Bod1l	A	G	5: 41,827,183	I508T	probably damaging	Het
Btnl6	T	A	17: 34,507,985	R524*	probably null	Het
C3	C	A	17: 57,221,159	D687Y	probably benign	Het
Ccbe1	G	A	18: 66,061,414	A367V	probably benign	Het
Ccr1	A	T	9: 123,964,289	M68K	probably damaging	Het
Cd27	T	A	6: 125,234,364		probably benign	Het
Celf2	C	A	2: 7,081,081		probably benign	Het
Cfap54	T	C	10: 93,061,257		probably benign	Het
Cfap97	A	G	8: 46,169,650	K26E	probably damaging	Het
Clcn4	T	A	7: 7,296,033	I48F	probably benign	Het
Cnot7	A	T	8: 40,494,020	N238K	probably benign	Het
Colec12	A	G	18: 9,866,750	I654V	unknown	Het
Dip2a	A	G	10: 76,292,360	I22T	probably damaging	Het
Eif4g3	C	T	4: 138,183,334	T1375M	possibly damaging	Het
Eml5	C	T	12: 98,858,783	G725D	probably damaging	Het
F12	T	C	13: 55,418,491	E496G	probably benign	Het
Fam227a	A	T	15: 79,615,436	S573T	probably benign	Het
Fnip1	T	C	11: 54,502,589	V593A	probably benign	Het
Focad	T	A	4: 88,121,373		probably benign	Het
Frem1	A	G	4: 83,001,739	I460T	possibly damaging	Het
Galnt10	T	G	11: 57,765,747		probably null	Het
Gm5592	A	T	7: 41,218,211		probably benign	Het
Gm6185	A	T	1: 161,209,760		noncoding transcript	Het
Gm7935	A	T	15: 74,081,114		noncoding transcript	Het
Grb14	C	T	2: 64,917,309	V369I	probably benign	Het
Gstm5	G	A	3: 107,898,466	A198T	probably damaging	Het
Herc2	T	A	7: 56,182,700	V3048D	probably damaging	Het
Htra4	T	G	8: 25,033,569	I327L	possibly damaging	Het
Ifi209	T	C	1: 173,637,307	M1T	probably null	Het
Ints6	T	C	14: 62,743,935	T135A	probably damaging	Het
Itpr1	T	A	6: 108,519,424	I2604N	probably damaging	Het
Krt6a	T	A	15: 101,692,558	M268L	probably benign	Het
Lrp1b	G	T	2: 41,004,613	S2201*	probably null	Het
Lrp2	T	C	2: 69,459,560	N3645S	probably benign	Het
Lrrc15	A	T	16: 30,272,904	I539N	possibly damaging	Het
Map3k6	T	C	4: 133,247,681	I675T	probably damaging	Het
Map3k9	T	A	12: 81,722,052	E1074V	probably damaging	Het
Med13l	T	A	5: 118,724,010	S339R	probably benign	Het
Mrps18a	T	C	17: 46,125,626		probably benign	Het
Nat8f2	G	T	6: 85,867,872	Y169*	probably null	Het
Nlrp1b	A	G	11: 71,181,799	I406T	probably benign	Het
Npc1l1	A	G	11: 6,217,705		probably null	Het
Olfr202	A	T	16: 59,284,380	M39K	probably damaging	Het
Olfr419	A	G	1: 174,250,441	V162A	probably damaging	Het
Ostf1	C	T	19: 18,581,325	G198E	probably benign	Het
Pcsk5	A	G	19: 17,581,255	V596A	probably damaging	Het
Pde4c	T	C	8: 70,750,105	*647Q	probably null	Het
Pkm	A	T	9: 59,670,634	I245F	probably damaging	Het
Ptprj	T	C	2: 90,469,641	H179R	probably benign	Het
Rapgef2	A	T	3: 79,069,432	S1356T	probably benign	Het
Rbm45	T	A	2: 76,370,250	L41Q	probably damaging	Het
Rsf1	ATGGCG	ATGGCGACGGTGGCG	7: 97,579,904		probably benign	Het
Scel	A	T	14: 103,586,493	I386F	probably benign	Het
Serpinb5	A	T	1: 106,881,757	N298Y	possibly damaging	Het
Sirt3	A	T	7: 140,869,493	L180Q	probably damaging	Het
Slc24a2	C	T	4: 86,991,388	V698I	probably damaging	Het
Slc43a3	A	T	2: 84,957,723	H483L	probably damaging	Het
Snrnp35	A	G	5: 124,490,199	D25G	probably benign	Het
Snrnp40	T	C	4: 130,362,646	S55P	probably damaging	Het
Snx9	T	A	17: 5,920,580	C399S	probably damaging	Het
Soga1	T	C	2: 157,040,734	E466G	probably damaging	Het
Ttbk2	T	C	2: 120,825,262		probably benign	Het
Vmn1r1	A	G	1: 182,157,776	V108A	possibly damaging	Het
Vmn1r201	T	A	13: 22,475,502	N295K	probably benign	Het
Zfp292	G	A	4: 34,807,491	P1851L	possibly damaging	Het
Zfp472	A	T	17: 32,977,743	D264V	probably damaging	Het

Other mutations in Scara5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00402:Scara5	APN	14	65738415	splice site	probably benign
IGL00772:Scara5	APN	14	65670562	utr 5 prime	probably benign
IGL01768:Scara5	APN	14	65689775	nonsense	probably null
IGL02081:Scara5	APN	14	65730655	missense	possibly damaging	0.96
IGL02280:Scara5	APN	14	65730778	missense	probably benign
IGL02795:Scara5	APN	14	65730680	missense	possibly damaging	0.72
IGL02887:Scara5	APN	14	65762829	missense	unknown
R0040:Scara5	UTSW	14	65762717	splice site	probably benign
R0605:Scara5	UTSW	14	65759648	missense	possibly damaging	0.85
R0735:Scara5	UTSW	14	65731019	missense	possibly damaging	0.85
R0925:Scara5	UTSW	14	65762718	critical splice acceptor site	probably benign
R1575:Scara5	UTSW	14	65730865	missense	probably benign	0.18
R1746:Scara5	UTSW	14	65731090	missense	probably benign
R1968:Scara5	UTSW	14	65689800	missense	possibly damaging	0.73
R4455:Scara5	UTSW	14	65762747	missense	probably benign	0.01
R4547:Scara5	UTSW	14	65670574	missense	possibly damaging	0.72
R4779:Scara5	UTSW	14	65730749	missense	probably benign	0.03
R5218:Scara5	UTSW	14	65759662	frame shift	probably null
R5316:Scara5	UTSW	14	65689815	missense	possibly damaging	0.73
R5331:Scara5	UTSW	14	65759662	frame shift	probably null
R5332:Scara5	UTSW	14	65759662	frame shift	probably null
R5366:Scara5	UTSW	14	65759662	frame shift	probably null
R5367:Scara5	UTSW	14	65759662	frame shift	probably null
R5368:Scara5	UTSW	14	65759662	frame shift	probably null
R5417:Scara5	UTSW	14	65759662	frame shift	probably null
R5418:Scara5	UTSW	14	65759662	frame shift	probably null
R5420:Scara5	UTSW	14	65759662	frame shift	probably null
R5447:Scara5	UTSW	14	65759662	frame shift	probably null
R5473:Scara5	UTSW	14	65740339	missense	possibly damaging	0.84
R5580:Scara5	UTSW	14	65731079	missense	probably benign	0.02
R7734:Scara5	UTSW	14	65731151	missense	possibly damaging	0.85
R7995:Scara5	UTSW	14	65759608	missense	possibly damaging	0.53
R8090:Scara5	UTSW	14	65742137	nonsense	probably null
R8308:Scara5	UTSW	14	65689785	missense	probably damaging	0.97
R9036:Scara5	UTSW	14	65762748	missense	probably benign	0.24

Predicted Primers

PCR Primer
(F):5'- CGACACAAGGTAGCCTCATG -3'
(R):5'- TCACATGAAGGTGACGCAG -3'

Sequencing Primer
(F):5'- CACAAGGTAGCCTCATGGTTTTAGC -3'
(R):5'- CACATGAAGGTGACGCAGACTTTG -3'

Posted On

2016-09-06