|Institutional Source||Beutler Lab|
|Gene Name||sorting nexin 9|
|Is this an essential gene?||Probably essential (E-score: 0.827)|
|Stock #||R5369 (G1)|
|Chromosomal Location||5841329-5931954 bp(+) (GRCm38)|
|Type of Mutation||missense|
|DNA Base Change (assembly)||T to A at 5920580 bp|
|Amino Acid Change||Cysteine to Serine at position 399 (C399S)|
|Ref Sequence||ENSEMBL: ENSMUSP00000002436 (fasta)|
|Gene Model||predicted gene model for transcript(s): [ENSMUST00000002436]|
|PDB Structure||Solution structure of the SH3 domain from mouse sorting nexin-9 [SOLUTION NMR]|
|Predicted Effect||probably damaging
AA Change: C399S
PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)
AA Change: C399S
|Meta Mutation Damage Score||0.5515|
|Coding Region Coverage||
|Validation Efficiency||99% (77/78)|
|MGI Phenotype||FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the sorting nexin family. Members of this family contain a phosphoinositide binding domain, and are involved in intracellular trafficking. The encoded protein does not contain a coiled coil region, like some family members, but does contain a SRC homology domain near its N-terminus. The encoded protein is reported to have a variety of interaction partners, including of adaptor protein 2 , dynamin, tyrosine kinase non-receptor 2, Wiskott-Aldrich syndrome-like, and ARP3 actin-related protein 3. The encoded protein is implicated in several stages of intracellular trafficking, including endocytosis, macropinocytosis, and F-actin nucleation. [provided by RefSeq, Jul 2013]|
|Allele List at MGI|
|Other mutations in this stock||
|Other mutations in Snx9||
(F):5'- CAAGGTCTGTCCCATTGTAGGC -3'
(R):5'- ATGACGTTTCCTGAGCTACCTC -3'
(F):5'- CCCATTGTAGGCATCATGCTGG -3'
(R):5'- ACGTTTCCTGAGCTACCTCTGTTATC -3'