Mutagenetix > Incidental Mutation

Incidental Mutation 'R5506:Gnl2'

430911

Institutional Source

Beutler Lab

Gene Symbol

Gnl2

Ensembl Gene

ENSMUSG00000028869

Gene Name

guanine nucleotide binding protein nucleolar 2

Synonyms

Ngp-1

MMRRC Submission

043067-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.966) question?

Stock #

R5506 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

124920866-124949175 bp(+) (GRCm39)

Type of Mutation

utr 3 prime

DNA Base Change (assembly)

C to A at 124949158 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000047783 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030684] [ENSMUST00000036383]

AlphaFold

Q99LH1

Predicted Effect

probably benign
Transcript: ENSMUST00000030684

SMART Domains

Protein: ENSMUSP00000030684
Gene: ENSMUSG00000028869

Domain	Start	End	E-Value	Type
Pfam:NGP1NT	43	174	1.2e-51	PFAM
SCOP:d1egaa1	178	261	8e-3	SMART
Pfam:FeoB_N	311	398	3.1e-6	PFAM
Pfam:MMR_HSR1	312	432	3.4e-13	PFAM
low complexity region	480	500	N/A	INTRINSIC
low complexity region	551	579	N/A	INTRINSIC
low complexity region	679	687	N/A	INTRINSIC
low complexity region	700	710	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000036383

SMART Domains

Protein: ENSMUSP00000047783
Gene: ENSMUSG00000042707

Domain	Start	End	E-Value	Type
low complexity region	36	48	N/A	INTRINSIC
Pfam:Ax_dynein_light	66	252	1.2e-96	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000147550

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 98.3%
3x: 97.3%
10x: 95.4%
20x: 91.4%

Validation Efficiency

100% (53/53)

Allele List at MGI

Other mutations in this stock

Total: 47 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110002E22Rik	G	T	3: 137,773,708 (GRCm39)	G966W	probably damaging	Het
A930009A15Rik	G	T	10: 115,414,267 (GRCm39)		probably null	Het
Cant1	G	T	11: 118,302,268 (GRCm39)	H16Q	probably benign	Het
Capn3	G	T	2: 120,332,901 (GRCm39)	V612F	probably damaging	Het
Cep112	A	T	11: 108,555,429 (GRCm39)	E141D	probably damaging	Het
Cept1	A	G	3: 106,438,564 (GRCm39)	V173A	probably benign	Het
CN725425	A	G	15: 91,120,029 (GRCm39)	D50G	possibly damaging	Het
Cubn	A	T	2: 13,496,506 (GRCm39)		probably null	Het
Dnajb12	GC	G	10: 59,728,574 (GRCm39)		probably null	Het
Dpp8	A	G	9: 64,985,391 (GRCm39)		probably null	Het
Ecm1	G	A	3: 95,643,169 (GRCm39)	T377I	probably benign	Het
Exosc8	A	G	3: 54,638,600 (GRCm39)		probably benign	Het
Fasn	C	T	11: 120,700,336 (GRCm39)	D2165N	probably benign	Het
Gab2	A	G	7: 96,952,320 (GRCm39)	E571G	probably damaging	Het
Galnt5	C	A	2: 57,889,637 (GRCm39)	H412Q	probably benign	Het
Galr1	T	A	18: 82,423,989 (GRCm39)	Y96F	possibly damaging	Het
Garin1b	G	A	6: 29,319,297 (GRCm39)	E34K	probably damaging	Het
H2ac22	A	C	13: 21,971,081 (GRCm39)	I103S	probably damaging	Het
H2ax	T	C	9: 44,246,402 (GRCm39)	V115A	probably benign	Het
Heatr9	T	C	11: 83,405,592 (GRCm39)	N317S	possibly damaging	Het
Kndc1	A	G	7: 139,507,804 (GRCm39)	Y1254C	probably damaging	Het
Lrp6	A	T	6: 134,436,259 (GRCm39)	D1302E	probably benign	Het
Mc2r	A	T	18: 68,541,019 (GRCm39)	Y91*	probably null	Het
Meis1	T	G	11: 18,891,747 (GRCm39)	D267A	possibly damaging	Het
Mki67	T	C	7: 135,301,710 (GRCm39)	K1108R	possibly damaging	Het
Mroh2a	A	G	1: 88,186,386 (GRCm39)	S64G	probably benign	Het
Myh3	T	G	11: 66,974,915 (GRCm39)	D219E	probably damaging	Het
Niban2	G	A	2: 32,810,994 (GRCm39)	V335M	probably damaging	Het
Or10g1b	T	C	14: 52,628,084 (GRCm39)	I49V	probably damaging	Het
Or7e166	T	C	9: 19,624,570 (GRCm39)	L149P	possibly damaging	Het
Pi4ka	A	G	16: 17,111,817 (GRCm39)	C1553R	probably damaging	Het
Plekhb1	C	A	7: 100,294,150 (GRCm39)		probably null	Het
Polr3d	A	T	14: 70,678,199 (GRCm39)	D165E	possibly damaging	Het
Prb1c	T	C	6: 132,338,819 (GRCm39)	N133S	unknown	Het
Psmb1	A	G	17: 15,710,478 (GRCm39)	Y24H	probably damaging	Het
Rab11fip5	A	G	6: 85,351,119 (GRCm39)	L131P	probably damaging	Het
Raph1	A	T	1: 60,532,657 (GRCm39)		probably benign	Het
Rmc1	A	G	18: 12,322,013 (GRCm39)		probably benign	Het
Scgb2b27	T	G	7: 33,711,484 (GRCm39)		probably benign	Het
Serpina10	T	C	12: 103,592,920 (GRCm39)	D264G	probably damaging	Het
Sftpb	A	G	6: 72,281,651 (GRCm39)	T15A	possibly damaging	Het
Slc20a1	T	C	2: 129,052,739 (GRCm39)	F674L	probably benign	Het
Syne2	A	T	12: 75,985,495 (GRCm39)	N1648Y	probably benign	Het
Thsd7a	G	T	6: 12,332,016 (GRCm39)	N1265K	possibly damaging	Het
Trem2	T	C	17: 48,658,802 (GRCm39)	L189P	probably benign	Het
Washc4	A	T	10: 83,417,201 (GRCm39)	R865S	probably damaging	Het
Zfp536	A	G	7: 37,268,217 (GRCm39)	S400P	probably damaging	Het

Other mutations in Gnl2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01977:Gnl2	APN	4	124,941,405 (GRCm39)	splice site	probably null
IGL02536:Gnl2	APN	4	124,946,401 (GRCm39)	nonsense	probably null
IGL03358:Gnl2	APN	4	124,946,387 (GRCm39)	missense	probably damaging	1.00
PIT4283001:Gnl2	UTSW	4	124,940,099 (GRCm39)	missense	probably damaging	1.00
R0377:Gnl2	UTSW	4	124,940,175 (GRCm39)	splice site	probably benign
R0419:Gnl2	UTSW	4	124,947,320 (GRCm39)	missense	probably benign	0.00
R0975:Gnl2	UTSW	4	124,942,171 (GRCm39)	missense	probably damaging	0.99
R1529:Gnl2	UTSW	4	124,940,099 (GRCm39)	missense	probably damaging	1.00
R1550:Gnl2	UTSW	4	124,938,027 (GRCm39)	missense	probably damaging	1.00
R1942:Gnl2	UTSW	4	124,923,957 (GRCm39)	missense	probably benign	0.01
R2095:Gnl2	UTSW	4	124,928,111 (GRCm39)	missense	probably damaging	1.00
R2125:Gnl2	UTSW	4	124,947,278 (GRCm39)	missense	probably benign	0.01
R3712:Gnl2	UTSW	4	124,940,067 (GRCm39)	missense	probably damaging	0.98
R3781:Gnl2	UTSW	4	124,931,399 (GRCm39)	missense	probably damaging	0.99
R4656:Gnl2	UTSW	4	124,934,790 (GRCm39)	nonsense	probably null
R4676:Gnl2	UTSW	4	124,947,266 (GRCm39)	missense	possibly damaging	0.83
R4710:Gnl2	UTSW	4	124,947,252 (GRCm39)	missense	probably benign	0.01
R4734:Gnl2	UTSW	4	124,934,811 (GRCm39)	missense	probably benign
R4916:Gnl2	UTSW	4	124,937,485 (GRCm39)	missense	probably damaging	1.00
R5106:Gnl2	UTSW	4	124,947,329 (GRCm39)	critical splice donor site	probably null
R5310:Gnl2	UTSW	4	124,946,633 (GRCm39)	missense	probably benign	0.00
R5967:Gnl2	UTSW	4	124,934,823 (GRCm39)	missense	probably benign	0.00
R6184:Gnl2	UTSW	4	124,948,022 (GRCm39)	critical splice donor site	probably null
R6395:Gnl2	UTSW	4	124,940,058 (GRCm39)	missense	probably damaging	0.99
R6432:Gnl2	UTSW	4	124,946,353 (GRCm39)	missense	possibly damaging	0.86
R6672:Gnl2	UTSW	4	124,942,186 (GRCm39)	missense	probably damaging	1.00
R7657:Gnl2	UTSW	4	124,923,951 (GRCm39)	missense	probably benign	0.00
R8387:Gnl2	UTSW	4	124,949,127 (GRCm39)	makesense	probably null
R8408:Gnl2	UTSW	4	124,938,082 (GRCm39)	missense	probably damaging	0.98
R9083:Gnl2	UTSW	4	124,941,357 (GRCm39)	missense	probably damaging	1.00
R9276:Gnl2	UTSW	4	124,947,250 (GRCm39)	missense	possibly damaging	0.83
RF003:Gnl2	UTSW	4	124,937,518 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- TCTTCAGGTCTGAGGTGCAC -3'
(R):5'- CACACAAGACATGCTGGAGG -3'

Sequencing Primer
(F):5'- AGGTCTGAGGTGCACACTCC -3'
(R):5'- CATGCTGGAGGAACTAAGGGCC -3'

Posted On

2016-10-05