Mutagenetix > Incidental Mutation

Incidental Mutation 'R5506:Garin1b'

430914

Institutional Source

Beutler Lab

Gene Symbol

Garin1b

Ensembl Gene

ENSMUSG00000039742

Gene Name

golgi associated RAB2 interactor 1B

Synonyms

LOC330277, Fam71f1

MMRRC Submission

043067-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.071) question?

Stock #

R5506 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

29319139-29336018 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 29319297 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Lysine at position 34 (E34K)

Ref Sequence

ENSEMBL: ENSMUSP00000132402 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000090487] [ENSMUST00000163229] [ENSMUST00000164560] [ENSMUST00000166462]

AlphaFold

Q3UZD7

Predicted Effect

probably damaging
Transcript: ENSMUST00000090487
AA Change: E34K

PolyPhen 2 Score 0.974 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000087973
Gene: ENSMUSG00000039742
AA Change: E34K

Domain	Start	End	E-Value	Type
low complexity region	49	59	N/A	INTRINSIC
Pfam:DUF3699	136	210	5e-29	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000163229
AA Change: E34K

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000132402
Gene: ENSMUSG00000039742
AA Change: E34K

Domain	Start	End	E-Value	Type
low complexity region	49	59	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000164560
AA Change: E34K

PolyPhen 2 Score 0.974 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000126496
Gene: ENSMUSG00000039742
AA Change: E34K

Domain	Start	End	E-Value	Type
low complexity region	49	59	N/A	INTRINSIC
Pfam:DUF3699	137	208	7e-28	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000166462
AA Change: E34K

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000132703
Gene: ENSMUSG00000039742
AA Change: E34K

Domain	Start	End	E-Value	Type
low complexity region	49	59	N/A	INTRINSIC
Pfam:DUF3699	136	210	3.1e-29	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000168771

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000171782

Meta Mutation Damage Score

0.1609

Coding Region Coverage

1x: 98.3%
3x: 97.3%
10x: 95.4%
20x: 91.4%

Validation Efficiency

100% (53/53)

Allele List at MGI

Other mutations in this stock

Total: 47 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110002E22Rik	G	T	3: 137,773,708 (GRCm39)	G966W	probably damaging	Het
A930009A15Rik	G	T	10: 115,414,267 (GRCm39)		probably null	Het
Cant1	G	T	11: 118,302,268 (GRCm39)	H16Q	probably benign	Het
Capn3	G	T	2: 120,332,901 (GRCm39)	V612F	probably damaging	Het
Cep112	A	T	11: 108,555,429 (GRCm39)	E141D	probably damaging	Het
Cept1	A	G	3: 106,438,564 (GRCm39)	V173A	probably benign	Het
CN725425	A	G	15: 91,120,029 (GRCm39)	D50G	possibly damaging	Het
Cubn	A	T	2: 13,496,506 (GRCm39)		probably null	Het
Dnajb12	GC	G	10: 59,728,574 (GRCm39)		probably null	Het
Dpp8	A	G	9: 64,985,391 (GRCm39)		probably null	Het
Ecm1	G	A	3: 95,643,169 (GRCm39)	T377I	probably benign	Het
Exosc8	A	G	3: 54,638,600 (GRCm39)		probably benign	Het
Fasn	C	T	11: 120,700,336 (GRCm39)	D2165N	probably benign	Het
Gab2	A	G	7: 96,952,320 (GRCm39)	E571G	probably damaging	Het
Galnt5	C	A	2: 57,889,637 (GRCm39)	H412Q	probably benign	Het
Galr1	T	A	18: 82,423,989 (GRCm39)	Y96F	possibly damaging	Het
Gnl2	C	A	4: 124,949,158 (GRCm39)		probably benign	Het
H2ac22	A	C	13: 21,971,081 (GRCm39)	I103S	probably damaging	Het
H2ax	T	C	9: 44,246,402 (GRCm39)	V115A	probably benign	Het
Heatr9	T	C	11: 83,405,592 (GRCm39)	N317S	possibly damaging	Het
Kndc1	A	G	7: 139,507,804 (GRCm39)	Y1254C	probably damaging	Het
Lrp6	A	T	6: 134,436,259 (GRCm39)	D1302E	probably benign	Het
Mc2r	A	T	18: 68,541,019 (GRCm39)	Y91*	probably null	Het
Meis1	T	G	11: 18,891,747 (GRCm39)	D267A	possibly damaging	Het
Mki67	T	C	7: 135,301,710 (GRCm39)	K1108R	possibly damaging	Het
Mroh2a	A	G	1: 88,186,386 (GRCm39)	S64G	probably benign	Het
Myh3	T	G	11: 66,974,915 (GRCm39)	D219E	probably damaging	Het
Niban2	G	A	2: 32,810,994 (GRCm39)	V335M	probably damaging	Het
Or10g1b	T	C	14: 52,628,084 (GRCm39)	I49V	probably damaging	Het
Or7e166	T	C	9: 19,624,570 (GRCm39)	L149P	possibly damaging	Het
Pi4ka	A	G	16: 17,111,817 (GRCm39)	C1553R	probably damaging	Het
Plekhb1	C	A	7: 100,294,150 (GRCm39)		probably null	Het
Polr3d	A	T	14: 70,678,199 (GRCm39)	D165E	possibly damaging	Het
Prb1c	T	C	6: 132,338,819 (GRCm39)	N133S	unknown	Het
Psmb1	A	G	17: 15,710,478 (GRCm39)	Y24H	probably damaging	Het
Rab11fip5	A	G	6: 85,351,119 (GRCm39)	L131P	probably damaging	Het
Raph1	A	T	1: 60,532,657 (GRCm39)		probably benign	Het
Rmc1	A	G	18: 12,322,013 (GRCm39)		probably benign	Het
Scgb2b27	T	G	7: 33,711,484 (GRCm39)		probably benign	Het
Serpina10	T	C	12: 103,592,920 (GRCm39)	D264G	probably damaging	Het
Sftpb	A	G	6: 72,281,651 (GRCm39)	T15A	possibly damaging	Het
Slc20a1	T	C	2: 129,052,739 (GRCm39)	F674L	probably benign	Het
Syne2	A	T	12: 75,985,495 (GRCm39)	N1648Y	probably benign	Het
Thsd7a	G	T	6: 12,332,016 (GRCm39)	N1265K	possibly damaging	Het
Trem2	T	C	17: 48,658,802 (GRCm39)	L189P	probably benign	Het
Washc4	A	T	10: 83,417,201 (GRCm39)	R865S	probably damaging	Het
Zfp536	A	G	7: 37,268,217 (GRCm39)	S400P	probably damaging	Het

Other mutations in Garin1b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01434:Garin1b	APN	6	29,320,700 (GRCm39)	missense	probably damaging	0.99
IGL02342:Garin1b	APN	6	29,323,829 (GRCm39)	missense	possibly damaging	0.87
R0402:Garin1b	UTSW	6	29,323,901 (GRCm39)	missense	probably benign	0.01
R0467:Garin1b	UTSW	6	29,326,606 (GRCm39)	missense	probably damaging	1.00
R0610:Garin1b	UTSW	6	29,326,576 (GRCm39)	missense	probably benign	0.01
R1773:Garin1b	UTSW	6	29,334,152 (GRCm39)	missense	possibly damaging	0.83
R1950:Garin1b	UTSW	6	29,335,815 (GRCm39)	splice site	probably null
R4259:Garin1b	UTSW	6	29,320,800 (GRCm39)	missense	probably damaging	1.00
R4305:Garin1b	UTSW	6	29,326,611 (GRCm39)	missense	probably damaging	1.00
R4351:Garin1b	UTSW	6	29,320,800 (GRCm39)	missense	probably damaging	1.00
R4508:Garin1b	UTSW	6	29,323,764 (GRCm39)	missense	probably benign	0.04
R5014:Garin1b	UTSW	6	29,326,723 (GRCm39)	intron	probably benign
R5249:Garin1b	UTSW	6	29,323,896 (GRCm39)	missense	probably damaging	1.00
R6212:Garin1b	UTSW	6	29,319,373 (GRCm39)	missense	probably damaging	1.00
R6456:Garin1b	UTSW	6	29,334,045 (GRCm39)	missense	probably benign
R6949:Garin1b	UTSW	6	29,323,905 (GRCm39)	missense	probably damaging	1.00
R7047:Garin1b	UTSW	6	29,323,809 (GRCm39)	missense	probably damaging	1.00
R7562:Garin1b	UTSW	6	29,323,833 (GRCm39)	missense	probably damaging	1.00
R8346:Garin1b	UTSW	6	29,334,030 (GRCm39)	missense	probably damaging	1.00
R9061:Garin1b	UTSW	6	29,323,902 (GRCm39)	missense	probably benign	0.27
X0065:Garin1b	UTSW	6	29,326,660 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CATTCATCATTGTGAGCTGACC -3'
(R):5'- AAGCCGCGCTGTTCTGAATC -3'

Sequencing Primer
(F):5'- CATTGTGAGCTGACCGGCTG -3'
(R):5'- CGCTGTTCTGAATCACATGCAAGAG -3'

Posted On

2016-10-05