Mutagenetix > Incidental Mutation

Incidental Mutation 'R5510:Prkcz'

431135

Institutional Source

Beutler Lab

Gene Symbol

Prkcz

Ensembl Gene

ENSMUSG00000029053

Gene Name

protein kinase C, zeta

Synonyms

Pkcz, zetaPKC, aPKCzeta

MMRRC Submission

043071-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R5510 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

155260129-155361361 bp(-) (GRCm38)

Type of Mutation

splice site (5 bp from exon)

DNA Base Change (assembly)

C to A at 155272936 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000099467 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030922] [ENSMUST00000103178]

AlphaFold

Q02956

Predicted Effect

probably null
Transcript: ENSMUST00000030922

SMART Domains

Protein: ENSMUSP00000030922
Gene: ENSMUSG00000029053

Domain	Start	End	E-Value	Type
PB1	15	98	4.55e-24	SMART
C1	131	180	6.73e-17	SMART
S_TKc	252	518	5.49e-94	SMART
S_TK_X	519	582	2.58e-21	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000103178

SMART Domains

Protein: ENSMUSP00000099467
Gene: ENSMUSG00000029053

Domain	Start	End	E-Value	Type
S_TKc	69	335	5.49e-94	SMART
S_TK_X	336	399	2.58e-21	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000135699

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000140256

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 98.5%
3x: 97.3%
10x: 95.1%
20x: 90.1%

Validation Efficiency

99% (91/92)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Protein kinase C (PKC) zeta is a member of the PKC family of serine/threonine kinases which are involved in a variety of cellular processes such as proliferation, differentiation and secretion. Unlike the classical PKC isoenzymes which are calcium-dependent, PKC zeta exhibits a kinase activity which is independent of calcium and diacylglycerol but not of phosphatidylserine. Furthermore, it is insensitive to typical PKC inhibitors and cannot be activated by phorbol ester. Unlike the classical PKC isoenzymes, it has only a single zinc finger module. These structural and biochemical properties indicate that the zeta subspecies is related to, but distinct from other isoenzymes of PKC. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2008]
PHENOTYPE: Young, not mature, homozygous null mice have reduced B cell numbers and abnormal secondary lymph organ structure. Young mice have fewer Peyer's patches, poor delineation of B & T cell zones, and fewer follicles of small size. Spleens have less prominent B cell follicles and abnormal marginal zones. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 73 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700011I03Rik	G	A	18: 57,538,084 (GRCm38)		probably null	Het
1700014D04Rik	T	C	13: 59,742,420 (GRCm38)		probably null	Het
Adgrl4	T	G	3: 151,497,830 (GRCm38)	I59R	possibly damaging	Het
Adgrv1	T	A	13: 81,445,244 (GRCm38)	D4208V	probably damaging	Het
Aimp2	A	T	5: 143,906,529 (GRCm38)		probably benign	Het
Ank3	G	A	10: 70,002,565 (GRCm38)	R1566K	possibly damaging	Het
Ankib1	A	G	5: 3,729,693 (GRCm38)	V392A	probably benign	Het
Ap2b1	A	G	11: 83,336,737 (GRCm38)		probably null	Het
Arsg	A	G	11: 109,527,874 (GRCm38)	E232G	probably benign	Het
Axdnd1	A	G	1: 156,335,350 (GRCm38)	F144S	probably benign	Het
Bud13	T	A	9: 46,292,200 (GRCm38)	M111K	probably damaging	Het
Cav2	T	C	6: 17,287,013 (GRCm38)	F152S	possibly damaging	Het
Ccdc180	A	G	4: 45,928,046 (GRCm38)	T1194A	probably damaging	Het
Ccdc88c	T	C	12: 100,945,031 (GRCm38)	K848R	probably damaging	Het
Ceacam15	A	G	7: 16,672,099 (GRCm38)	W176R	probably damaging	Het
Cenpf	A	T	1: 189,682,903 (GRCm38)	D136E	probably benign	Het
Dclk2	T	C	3: 86,906,037 (GRCm38)	I201V	possibly damaging	Het
Defa24	T	A	8: 21,734,596 (GRCm38)	D20E	probably damaging	Het
Dgcr8	T	C	16: 18,277,175 (GRCm38)	N566D	probably damaging	Het
Dido1	C	A	2: 180,685,173 (GRCm38)	V386L	probably benign	Het
Dnah2	C	T	11: 69,458,920 (GRCm38)	R2399Q	probably benign	Het
Dtx3	G	A	10: 127,192,938 (GRCm38)	P141S	probably benign	Het
Fmn1	T	C	2: 113,596,369 (GRCm38)	Y1144H	probably damaging	Het
Gabbr2	A	G	4: 46,734,113 (GRCm38)	L535P	probably damaging	Het
Gimap3	T	A	6: 48,765,249 (GRCm38)	E249V	possibly damaging	Het
Git2	A	T	5: 114,743,774 (GRCm38)		probably null	Het
Gm4922	T	C	10: 18,783,997 (GRCm38)	T326A	probably benign	Het
Gsdmc2	T	G	15: 63,828,196 (GRCm38)	E242D	probably benign	Het
Hdgfl2	G	A	17: 56,082,118 (GRCm38)	G31S	possibly damaging	Het
Herc2	A	T	7: 56,206,771 (GRCm38)	I3956F	probably damaging	Het
Hsf2bp	G	A	17: 31,946,747 (GRCm38)	R134C	unknown	Het
Igf1r	G	C	7: 68,193,359 (GRCm38)	R739S	probably benign	Het
Igkv4-51	T	C	6: 69,681,459 (GRCm38)	E102G	probably damaging	Het
Kif1a	T	G	1: 93,041,692 (GRCm38)	I1156L	possibly damaging	Het
Kti12	T	C	4: 108,848,624 (GRCm38)	L245S	probably damaging	Het
Med17	A	G	9: 15,270,404 (GRCm38)	S17P	probably benign	Het
Mllt6	G	A	11: 97,669,500 (GRCm38)	S210N	possibly damaging	Het
Mrps18b	A	G	17: 35,914,323 (GRCm38)		probably benign	Het
Ms4a8a	A	G	19: 11,079,464 (GRCm38)	S85P	probably benign	Het
Msln	T	C	17: 25,749,873 (GRCm38)	Q487R	probably benign	Het
Myh13	A	G	11: 67,337,723 (GRCm38)	N363S	probably benign	Het
Myo6	T	C	9: 80,245,660 (GRCm38)	F192L	probably damaging	Het
Nfkbiz	T	C	16: 55,814,020 (GRCm38)	D688G	probably damaging	Het
Nsun4	C	T	4: 116,051,777 (GRCm38)	V529I	possibly damaging	Het
Olfr105-ps	A	T	17: 37,383,301 (GRCm38)	M245L	probably benign	Het
Olfr345	G	A	2: 36,640,963 (GRCm38)	R308K	probably benign	Het
Olfr495	G	A	7: 108,395,125 (GRCm38)	A2T	probably benign	Het
Phf11a	C	A	14: 59,279,385 (GRCm38)	C208F	probably damaging	Het
Plekhh2	G	A	17: 84,566,847 (GRCm38)	C520Y	probably benign	Het
Plxna4	C	A	6: 32,178,358 (GRCm38)	M1550I	probably damaging	Het
Pnpla6	A	T	8: 3,521,397 (GRCm38)	Y140F	probably damaging	Het
Ppp1r12a	T	A	10: 108,249,627 (GRCm38)	S478T	possibly damaging	Het
Prss55	T	A	14: 64,077,125 (GRCm38)	M199L	probably damaging	Het
Qrich1	G	A	9: 108,556,460 (GRCm38)	V651I	possibly damaging	Het
Ralyl	T	C	3: 13,776,945 (GRCm38)	V47A	probably damaging	Het
Raph1	A	T	1: 60,522,946 (GRCm38)		probably benign	Het
Rgs12	T	C	5: 34,966,039 (GRCm38)	Y389H	probably damaging	Het
Sec24b	C	A	3: 130,040,895 (GRCm38)	G82V	probably damaging	Het
Sema4a	A	G	3: 88,449,986 (GRCm38)		probably null	Het
Slc25a11	A	T	11: 70,645,535 (GRCm38)	W149R	probably damaging	Het
Slc2a7	T	G	4: 150,160,094 (GRCm38)	S340A	probably benign	Het
Slc32a1	T	A	2: 158,614,796 (GRCm38)	M457K	probably damaging	Het
Spint4	C	T	2: 164,700,892 (GRCm38)	T135M	probably damaging	Het
Sult2a2	A	C	7: 13,738,303 (GRCm38)	N142H	probably damaging	Het
Tbc1d1	G	A	5: 64,333,395 (GRCm38)	G863D	probably damaging	Het
Tmem156	G	A	5: 65,075,574 (GRCm38)	T151M	probably benign	Het
Trip12	T	C	1: 84,768,680 (GRCm38)	Q459R	probably damaging	Het
Vmn2r116	G	A	17: 23,386,121 (GRCm38)	C136Y	probably damaging	Het
Vmn2r51	C	T	7: 10,102,618 (GRCm38)	V79M	possibly damaging	Het
Vmn2r67	A	T	7: 85,151,815 (GRCm38)	D304E	probably benign	Het
Wdr93	T	A	7: 79,750,031 (GRCm38)	F123I	probably damaging	Het
Zfp672	A	T	11: 58,316,630 (GRCm38)	C288*	probably null	Het
Zp1	T	C	19: 10,919,405 (GRCm38)	Y90C	probably damaging	Het

Other mutations in Prkcz

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00501:Prkcz	APN	4	155,294,401 (GRCm38)	splice site	probably benign
IGL02114:Prkcz	APN	4	155,271,590 (GRCm38)	missense	probably damaging	1.00
IGL02582:Prkcz	APN	4	155,271,256 (GRCm38)	missense	probably damaging	1.00
IGL03010:Prkcz	APN	4	155,286,805 (GRCm38)	missense	probably damaging	1.00
IGL03199:Prkcz	APN	4	155,272,984 (GRCm38)	missense	possibly damaging	0.85
IGL03225:Prkcz	APN	4	155,268,195 (GRCm38)	missense	probably damaging	0.99
IGL03229:Prkcz	APN	4	155,262,506 (GRCm38)	missense	probably benign	0.19
IGL03299:Prkcz	APN	4	155,286,790 (GRCm38)	missense	possibly damaging	0.78
PIT4403001:Prkcz	UTSW	4	155,293,156 (GRCm38)	critical splice donor site	probably null
R0389:Prkcz	UTSW	4	155,269,140 (GRCm38)	missense	probably damaging	1.00
R0443:Prkcz	UTSW	4	155,269,140 (GRCm38)	missense	probably damaging	1.00
R1666:Prkcz	UTSW	4	155,289,751 (GRCm38)	missense	probably damaging	1.00
R1668:Prkcz	UTSW	4	155,289,751 (GRCm38)	missense	probably damaging	1.00
R1686:Prkcz	UTSW	4	155,271,256 (GRCm38)	missense	probably damaging	1.00
R1710:Prkcz	UTSW	4	155,262,512 (GRCm38)	missense	probably damaging	1.00
R2025:Prkcz	UTSW	4	155,289,710 (GRCm38)	missense	probably damaging	1.00
R3162:Prkcz	UTSW	4	155,290,524 (GRCm38)	missense	probably benign	0.00
R3162:Prkcz	UTSW	4	155,290,524 (GRCm38)	missense	probably benign	0.00
R4399:Prkcz	UTSW	4	155,269,077 (GRCm38)	missense	possibly damaging	0.86
R4780:Prkcz	UTSW	4	155,289,702 (GRCm38)	missense	probably damaging	1.00
R4923:Prkcz	UTSW	4	155,357,489 (GRCm38)	missense	probably damaging	1.00
R5160:Prkcz	UTSW	4	155,293,232 (GRCm38)	missense	probably benign	0.22
R6278:Prkcz	UTSW	4	155,268,195 (GRCm38)	missense	probably damaging	0.99
R6290:Prkcz	UTSW	4	155,356,499 (GRCm38)	missense	probably damaging	1.00
R6881:Prkcz	UTSW	4	155,269,056 (GRCm38)	missense	possibly damaging	0.90
R7055:Prkcz	UTSW	4	155,289,634 (GRCm38)	missense	probably benign	0.01
R7108:Prkcz	UTSW	4	155,286,793 (GRCm38)	nonsense	probably null
R7241:Prkcz	UTSW	4	155,269,059 (GRCm38)	missense	probably benign	0.00
R7355:Prkcz	UTSW	4	155,357,496 (GRCm38)	missense	probably damaging	1.00
R7466:Prkcz	UTSW	4	155,271,602 (GRCm38)	missense	probably damaging	1.00
R7522:Prkcz	UTSW	4	155,271,285 (GRCm38)	missense	probably damaging	1.00
R7618:Prkcz	UTSW	4	155,262,482 (GRCm38)	missense	probably damaging	1.00
R7753:Prkcz	UTSW	4	155,272,968 (GRCm38)	missense	possibly damaging	0.61
R8079:Prkcz	UTSW	4	155,357,505 (GRCm38)	missense	probably damaging	1.00
R8407:Prkcz	UTSW	4	155,268,216 (GRCm38)	missense	probably damaging	0.99
R8523:Prkcz	UTSW	4	155,262,511 (GRCm38)	missense	probably damaging	1.00
R8824:Prkcz	UTSW	4	155,344,828 (GRCm38)	start gained	probably benign
R9753:Prkcz	UTSW	4	155,293,202 (GRCm38)	missense	probably benign	0.01
X0067:Prkcz	UTSW	4	155,354,704 (GRCm38)	missense	probably benign	0.25
Z1176:Prkcz	UTSW	4	155,356,468 (GRCm38)	missense	probably damaging	1.00
Z1176:Prkcz	UTSW	4	155,354,680 (GRCm38)	missense	probably damaging	1.00
Z1177:Prkcz	UTSW	4	155,301,004 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TCAAAGTCTGGAGAGGGACC -3'
(R):5'- ATCTCTGTAAGAGGCAGCCG -3'

Sequencing Primer
(F):5'- CAGTCCTGGGCACAAAGC -3'
(R):5'- AGGTTCCATGCACTCTGGC -3'

Posted On

2016-10-05