Incidental Mutation 'R5511:Vmn2r28'
ID 431224
Institutional Source Beutler Lab
Gene Symbol Vmn2r28
Ensembl Gene ENSMUSG00000066820
Gene Name vomeronasal 2, receptor 28
Synonyms EG665255
MMRRC Submission 043072-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.124) question?
Stock # R5511 (G1)
Quality Score 151
Status Validated
Chromosome 7
Chromosomal Location 5483455-5496850 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 5487011 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Alanine at position 551 (T551A)
Ref Sequence ENSEMBL: ENSMUSP00000083477 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000086297]
AlphaFold L7N203
Predicted Effect possibly damaging
Transcript: ENSMUST00000086297
AA Change: T551A

PolyPhen 2 Score 0.610 (Sensitivity: 0.87; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000083477
Gene: ENSMUSG00000066820
AA Change: T551A

DomainStartEndE-ValueType
signal peptide 1 18 N/A INTRINSIC
Pfam:ANF_receptor 73 470 1.7e-26 PFAM
Pfam:NCD3G 512 565 9.8e-21 PFAM
Pfam:7tm_3 598 833 2.8e-56 PFAM
Meta Mutation Damage Score 0.1795 question?
Coding Region Coverage
  • 1x: 98.5%
  • 3x: 97.4%
  • 10x: 95.1%
  • 20x: 90.3%
Validation Efficiency 98% (81/83)
Allele List at MGI
Other mutations in this stock
Total: 70 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aadacl2fm2 T C 3: 59,654,685 (GRCm39) L173P probably damaging Het
Agl A T 3: 116,582,209 (GRCm39) V271D possibly damaging Het
Alox15 G T 11: 70,240,808 (GRCm39) P191T probably benign Het
Apaf1 T C 10: 90,890,254 (GRCm39) Y583C probably damaging Het
Aqp9 T A 9: 71,070,375 (GRCm39) probably benign Het
Bms1 A G 6: 118,365,848 (GRCm39) F1113L possibly damaging Het
Cap1 A C 4: 122,756,583 (GRCm39) probably benign Het
Car11 T C 7: 45,349,885 (GRCm39) W35R probably damaging Het
Casc3 T A 11: 98,701,740 (GRCm39) Y91* probably null Het
Ccdc192 G A 18: 57,671,156 (GRCm39) probably null Het
Cd22 A T 7: 30,569,496 (GRCm39) I540N probably damaging Het
Chad A T 11: 94,456,072 (GRCm39) E50V probably damaging Het
Chd3 C G 11: 69,252,301 (GRCm39) G34R probably damaging Het
Col9a1 T C 1: 24,218,619 (GRCm39) V77A unknown Het
Copg1 G A 6: 87,889,276 (GRCm39) V873M probably damaging Het
Dnhd1 T A 7: 105,363,363 (GRCm39) V3975E probably damaging Het
Dock6 A T 9: 21,728,703 (GRCm39) V1290D possibly damaging Het
Elp2 A T 18: 24,745,507 (GRCm39) K150* probably null Het
Eri3 A C 4: 117,472,386 (GRCm39) Y260S possibly damaging Het
Esrrg C T 1: 187,943,304 (GRCm39) L426F probably damaging Het
Farp1 G T 14: 121,474,584 (GRCm39) V266L probably damaging Het
Flnc A G 6: 29,458,897 (GRCm39) E2459G probably damaging Het
Glis1 G A 4: 107,293,074 (GRCm39) D66N probably damaging Het
Gm14129 T A 2: 148,773,446 (GRCm39) noncoding transcript Het
Gm28051 A G 12: 102,686,415 (GRCm39) *82R probably null Het
Gm8741 G T 17: 35,555,062 (GRCm39) noncoding transcript Het
Gne C T 4: 44,041,843 (GRCm39) V485M probably damaging Het
Lcn10 T A 2: 25,572,841 (GRCm39) V15E probably benign Het
Mapk11 T A 15: 89,029,380 (GRCm39) probably null Het
Me3 T G 7: 89,455,876 (GRCm39) Y243D probably damaging Het
Mllt6 G A 11: 97,560,326 (GRCm39) S210N possibly damaging Het
Myo1h T A 5: 114,483,958 (GRCm39) L519* probably null Het
Myo9a T C 9: 59,687,495 (GRCm39) V200A probably damaging Het
Mzf1 T A 7: 12,785,526 (GRCm39) Q161H possibly damaging Het
Nim1k T G 13: 120,189,130 (GRCm39) H93P probably damaging Het
Nkx6-1 C A 5: 101,811,532 (GRCm39) R190L probably damaging Het
Noc3l A G 19: 38,782,625 (GRCm39) V671A probably benign Het
Nsd1 T C 13: 55,460,543 (GRCm39) S2257P probably benign Het
Nup210 T A 6: 91,003,945 (GRCm39) I648F probably damaging Het
Oplah T C 15: 76,189,944 (GRCm39) E223G possibly damaging Het
Or5b120 T C 19: 13,480,556 (GRCm39) M283T probably benign Het
Plekhs1 A C 19: 56,474,224 (GRCm39) T457P probably damaging Het
Plppr4 G A 3: 117,119,551 (GRCm39) T286I probably benign Het
Prpf4b T C 13: 35,068,037 (GRCm39) probably benign Het
Prss39 T A 1: 34,541,878 (GRCm39) D318E possibly damaging Het
Psap A G 10: 60,134,959 (GRCm39) E289G possibly damaging Het
Rad17 A G 13: 100,764,157 (GRCm39) V438A possibly damaging Het
Raf1 T C 6: 115,597,217 (GRCm39) S28G probably benign Het
Ranbp2 A G 10: 58,329,561 (GRCm39) D2978G probably benign Het
Rnf170 T A 8: 26,631,027 (GRCm39) D213E probably damaging Het
Rsph3a T A 17: 8,164,905 (GRCm39) H88Q possibly damaging Het
Scd1 A G 19: 44,395,198 (GRCm39) I9T probably benign Het
Sgk3 T C 1: 9,968,911 (GRCm39) probably benign Het
Slc14a1 C T 18: 78,145,686 (GRCm39) S416N probably benign Het
Smok4a T C 17: 13,746,474 (GRCm39) noncoding transcript Het
Sostdc1 A T 12: 36,367,165 (GRCm39) I114F probably damaging Het
Spen G A 4: 141,202,375 (GRCm39) T2084I possibly damaging Het
Spen G T 4: 141,244,149 (GRCm39) D295E unknown Het
Sptbn5 T C 2: 119,890,202 (GRCm39) probably benign Het
Srebf1 T C 11: 60,101,184 (GRCm39) probably benign Het
Tcea3 A T 4: 135,998,683 (GRCm39) Y319F probably damaging Het
Timd4 T A 11: 46,710,807 (GRCm39) probably null Het
Tmem88b G A 4: 155,870,002 (GRCm39) P20S probably damaging Het
Tsen2 T A 6: 115,538,365 (GRCm39) C281S probably damaging Het
Vmn2r45 T C 7: 8,474,832 (GRCm39) H732R probably benign Het
Wdr90 A G 17: 26,063,995 (GRCm39) probably benign Het
Zdbf2 T C 1: 63,344,836 (GRCm39) S1072P probably benign Het
Zfp148 A G 16: 33,255,004 (GRCm39) probably benign Het
Zfp2 T A 11: 50,790,851 (GRCm39) E397D probably damaging Het
Zfp729b A G 13: 67,740,499 (GRCm39) F599L probably damaging Het
Other mutations in Vmn2r28
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00095:Vmn2r28 APN 7 5,491,068 (GRCm39) missense probably benign 0.12
IGL01061:Vmn2r28 APN 7 5,491,183 (GRCm39) missense probably damaging 1.00
IGL01160:Vmn2r28 APN 7 5,489,477 (GRCm39) missense probably damaging 0.99
IGL01335:Vmn2r28 APN 7 5,484,087 (GRCm39) missense possibly damaging 0.67
IGL01532:Vmn2r28 APN 7 5,489,463 (GRCm39) missense probably benign 0.16
IGL01791:Vmn2r28 APN 7 5,491,161 (GRCm39) missense probably benign 0.00
IGL01875:Vmn2r28 APN 7 5,484,302 (GRCm39) missense probably benign 0.30
IGL02161:Vmn2r28 APN 7 5,491,123 (GRCm39) missense possibly damaging 0.88
IGL02499:Vmn2r28 APN 7 5,493,568 (GRCm39) missense probably damaging 0.98
IGL02858:Vmn2r28 APN 7 5,484,003 (GRCm39) missense probably damaging 0.99
IGL03061:Vmn2r28 APN 7 5,487,015 (GRCm39) missense probably damaging 0.98
G1patch:Vmn2r28 UTSW 7 5,491,408 (GRCm39) missense probably benign 0.13
R0288:Vmn2r28 UTSW 7 5,491,020 (GRCm39) missense probably damaging 1.00
R0361:Vmn2r28 UTSW 7 5,496,715 (GRCm39) missense probably benign 0.00
R0396:Vmn2r28 UTSW 7 5,491,513 (GRCm39) missense probably benign 0.05
R0480:Vmn2r28 UTSW 7 5,493,456 (GRCm39) missense probably benign 0.00
R0485:Vmn2r28 UTSW 7 5,491,689 (GRCm39) missense probably damaging 1.00
R0837:Vmn2r28 UTSW 7 5,491,026 (GRCm39) missense probably damaging 0.99
R1282:Vmn2r28 UTSW 7 5,484,301 (GRCm39) missense probably damaging 0.99
R1296:Vmn2r28 UTSW 7 5,484,544 (GRCm39) missense possibly damaging 0.81
R1829:Vmn2r28 UTSW 7 5,496,810 (GRCm39) missense probably benign
R1853:Vmn2r28 UTSW 7 5,484,246 (GRCm39) nonsense probably null
R1869:Vmn2r28 UTSW 7 5,489,345 (GRCm39) missense probably benign 0.00
R1887:Vmn2r28 UTSW 7 5,491,288 (GRCm39) missense possibly damaging 0.90
R1961:Vmn2r28 UTSW 7 5,484,070 (GRCm39) missense possibly damaging 0.85
R1998:Vmn2r28 UTSW 7 5,491,313 (GRCm39) missense possibly damaging 0.87
R2392:Vmn2r28 UTSW 7 5,487,130 (GRCm39) missense probably damaging 0.98
R2432:Vmn2r28 UTSW 7 5,491,701 (GRCm39) missense probably damaging 0.99
R3055:Vmn2r28 UTSW 7 5,484,391 (GRCm39) missense probably damaging 0.98
R3753:Vmn2r28 UTSW 7 5,491,026 (GRCm39) missense probably damaging 0.99
R3877:Vmn2r28 UTSW 7 5,491,357 (GRCm39) missense probably damaging 1.00
R4307:Vmn2r28 UTSW 7 5,493,707 (GRCm39) missense probably damaging 0.99
R5023:Vmn2r28 UTSW 7 5,489,463 (GRCm39) missense probably benign 0.16
R5057:Vmn2r28 UTSW 7 5,489,463 (GRCm39) missense probably benign 0.16
R5083:Vmn2r28 UTSW 7 5,483,671 (GRCm39) missense possibly damaging 0.77
R5427:Vmn2r28 UTSW 7 5,489,376 (GRCm39) missense probably damaging 0.99
R5472:Vmn2r28 UTSW 7 5,490,943 (GRCm39) critical splice donor site probably null
R5731:Vmn2r28 UTSW 7 5,491,668 (GRCm39) missense probably benign 0.41
R6091:Vmn2r28 UTSW 7 5,496,790 (GRCm39) missense possibly damaging 0.88
R6179:Vmn2r28 UTSW 7 5,491,003 (GRCm39) nonsense probably null
R6276:Vmn2r28 UTSW 7 5,493,730 (GRCm39) missense probably benign 0.01
R6441:Vmn2r28 UTSW 7 5,491,474 (GRCm39) missense probably benign 0.00
R6463:Vmn2r28 UTSW 7 5,489,435 (GRCm39) missense probably benign 0.07
R6528:Vmn2r28 UTSW 7 5,493,684 (GRCm39) missense probably benign 0.12
R6725:Vmn2r28 UTSW 7 5,491,408 (GRCm39) missense probably benign 0.13
R6760:Vmn2r28 UTSW 7 5,484,229 (GRCm39) missense probably damaging 0.97
R6849:Vmn2r28 UTSW 7 5,483,806 (GRCm39) missense probably damaging 1.00
R7110:Vmn2r28 UTSW 7 5,493,733 (GRCm39) missense probably benign 0.06
R7146:Vmn2r28 UTSW 7 5,484,495 (GRCm39) missense probably benign 0.05
R7407:Vmn2r28 UTSW 7 5,484,308 (GRCm39) missense probably damaging 1.00
R7563:Vmn2r28 UTSW 7 5,491,200 (GRCm39) missense probably benign 0.00
R7611:Vmn2r28 UTSW 7 5,484,255 (GRCm39) missense probably benign 0.02
R7808:Vmn2r28 UTSW 7 5,496,678 (GRCm39) missense probably damaging 0.98
R7862:Vmn2r28 UTSW 7 5,493,613 (GRCm39) missense probably benign 0.00
R7916:Vmn2r28 UTSW 7 5,483,818 (GRCm39) missense probably damaging 1.00
R8183:Vmn2r28 UTSW 7 5,491,147 (GRCm39) missense probably damaging 1.00
R8334:Vmn2r28 UTSW 7 5,487,059 (GRCm39) missense probably damaging 1.00
R8519:Vmn2r28 UTSW 7 5,489,347 (GRCm39) missense probably benign 0.31
R8989:Vmn2r28 UTSW 7 5,493,473 (GRCm39) missense probably benign 0.00
R9066:Vmn2r28 UTSW 7 5,491,596 (GRCm39) missense probably damaging 1.00
R9422:Vmn2r28 UTSW 7 5,483,747 (GRCm39) missense probably damaging 1.00
R9469:Vmn2r28 UTSW 7 5,487,118 (GRCm39) missense probably damaging 0.99
R9608:Vmn2r28 UTSW 7 5,491,220 (GRCm39) missense probably benign 0.05
Predicted Primers PCR Primer
(F):5'- CAATGCGTGAGTATGTGGGC -3'
(R):5'- TTTGCACAAAGATCACTAGCATCTC -3'

Sequencing Primer
(F):5'- GCAAAGACACAAGGTATATGTGTTTG -3'
(R):5'- TCACAGCTGTCCATTAAACAATG -3'
Posted On 2016-10-05