Mutagenetix > Incidental Mutation

Incidental Mutation 'R5308:Gcfc2'

434472

Institutional Source

Beutler Lab

Gene Symbol

Gcfc2

Ensembl Gene

ENSMUSG00000035125

Gene Name

GC-rich sequence DNA binding factor 2

Synonyms

AW146020

MMRRC Submission

042891-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.484) question?

Stock #

R5308 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

81900650-81936896 bp(+) (GRCm39)

Type of Mutation

critical splice donor site (2 bp from exon)

DNA Base Change (assembly)

T to C at 81920524 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000035644 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000043195] [ENSMUST00000152996]

AlphaFold

Q8BKT3

Predicted Effect

probably null
Transcript: ENSMUST00000043195

SMART Domains

Protein: ENSMUSP00000035644
Gene: ENSMUSG00000035125

Domain	Start	End	E-Value	Type
low complexity region	16	24	N/A	INTRINSIC
low complexity region	43	66	N/A	INTRINSIC
low complexity region	97	111	N/A	INTRINSIC
low complexity region	164	175	N/A	INTRINSIC
low complexity region	193	210	N/A	INTRINSIC
coiled coil region	255	308	N/A	INTRINSIC
low complexity region	392	406	N/A	INTRINSIC
Pfam:GCFC	456	672	3e-34	PFAM
low complexity region	753	763	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000127949

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000132301

Predicted Effect

probably benign
Transcript: ENSMUST00000152996

SMART Domains

Protein: ENSMUSP00000138136
Gene: ENSMUSG00000035125

Domain	Start	End	E-Value	Type
low complexity region	16	24	N/A	INTRINSIC
low complexity region	43	66	N/A	INTRINSIC
low complexity region	97	111	N/A	INTRINSIC
low complexity region	164	175	N/A	INTRINSIC
low complexity region	193	210	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000203959

Coding Region Coverage

1x: 99.2%
3x: 97.7%
10x: 95.4%
20x: 91.2%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The first mRNA transcript isolated for this gene was part of an artificial chimera derived from two distinct gene transcripts and a primer used in the cloning process (see Genbank accession M29204). A positively charged amino terminus present only in the chimera was determined to bind GC-rich DNA, thus mistakenly thought to identify a transcription factor gene. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 65 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700006A11Rik	C	G	3: 124,199,999 (GRCm39)	G531A	probably damaging	Het
4921504E06Rik	T	C	2: 19,528,892 (GRCm39)	D163G	probably damaging	Het
Abcd4	C	T	12: 84,650,067 (GRCm39)		probably null	Het
Alg9	T	C	9: 50,734,011 (GRCm39)	S570P	possibly damaging	Het
Angptl3	C	A	4: 98,922,723 (GRCm39)	H255N	probably benign	Het
Ank3	G	A	10: 69,838,395 (GRCm39)	R1566K	possibly damaging	Het
Cdc37	A	T	9: 21,052,060 (GRCm39)	D326E	probably benign	Het
Cdk13	T	C	13: 17,946,898 (GRCm39)	K6R	probably damaging	Het
Ces1b	T	C	8: 93,793,645 (GRCm39)	K315E	probably benign	Het
Cfap61	G	A	2: 145,951,908 (GRCm39)	G190S	probably damaging	Het
Cimap3	T	C	3: 105,908,419 (GRCm39)	T107A	probably benign	Het
Ckap4	T	C	10: 84,364,238 (GRCm39)	E275G	probably benign	Het
Cplane1	G	A	15: 8,290,174 (GRCm39)		probably null	Het
Csf3r	A	G	4: 125,929,137 (GRCm39)	D349G	probably benign	Het
Cyp2d37-ps	T	C	15: 82,574,012 (GRCm39)		noncoding transcript	Het
Dmbt1	T	A	7: 130,642,751 (GRCm39)	C190S	probably damaging	Het
Dnah11	A	G	12: 118,049,415 (GRCm39)	F1670L	possibly damaging	Het
Dnah5	A	T	15: 28,229,797 (GRCm39)	I144F	possibly damaging	Het
Eno2	C	A	6: 124,744,056 (GRCm39)	V84L	probably damaging	Het
Ercc4	G	T	16: 12,948,028 (GRCm39)	R325L	probably damaging	Het
Fcgr2b	T	G	1: 170,793,279 (GRCm39)	Q250P	probably benign	Het
Garin5a	T	C	7: 44,149,606 (GRCm39)	V109A	probably damaging	Het
Garre1	T	A	7: 33,945,180 (GRCm39)	K355*	probably null	Het
Glb1l2	C	T	9: 26,676,055 (GRCm39)	G509D	probably damaging	Het
Gm11595	G	A	11: 99,663,381 (GRCm39)	R100C	unknown	Het
Grn	A	G	11: 102,327,018 (GRCm39)	N160D	possibly damaging	Het
Hexd	T	A	11: 121,113,095 (GRCm39)	V510D	probably damaging	Het
Igfbp1	G	A	11: 7,149,919 (GRCm39)		probably null	Het
Itga11	T	A	9: 62,663,051 (GRCm39)	M589K	probably benign	Het
Itpr1	A	T	6: 108,333,472 (GRCm39)	S51C	probably damaging	Het
Klra3	T	C	6: 130,311,270 (GRCm39)		probably null	Het
Mad2l1	T	C	6: 66,514,675 (GRCm39)		probably null	Het
Matn3	CGGGGCTCGGGGGC	CGGGGC	12: 9,002,308 (GRCm39)		probably null	Het
Myo9a	T	A	9: 59,771,244 (GRCm39)	Y939N	probably damaging	Het
Nxpe3	C	T	16: 55,686,834 (GRCm39)	S58N	probably benign	Het
Or1j16	T	A	2: 36,530,706 (GRCm39)	Y218*	probably null	Het
Or3a1c	T	A	11: 74,046,397 (GRCm39)	M139K	probably damaging	Het
Or4c103	T	C	2: 88,513,749 (GRCm39)	E109G	probably benign	Het
Or4k45	C	T	2: 111,394,899 (GRCm39)	A297T	probably damaging	Het
Paics	T	C	5: 77,104,479 (GRCm39)	S35P	probably damaging	Het
Pcnt	A	C	10: 76,192,159 (GRCm39)	Y2717*	probably null	Het
Plekho2	T	A	9: 65,465,957 (GRCm39)	N144Y	probably damaging	Het
Plscr5	T	C	9: 92,080,565 (GRCm39)	F17S	possibly damaging	Het
Prrc2a	C	T	17: 35,380,023 (GRCm39)	R192H	unknown	Het
Rbm27	T	A	18: 42,460,275 (GRCm39)	M735K	probably damaging	Het
Rfc1	T	A	5: 65,436,804 (GRCm39)	K625N	probably damaging	Het
Ric8b	T	A	10: 84,783,611 (GRCm39)	F156L	probably benign	Het
Romo1	C	A	2: 155,986,473 (GRCm39)	A32E	possibly damaging	Het
Rpl26	T	A	11: 68,795,284 (GRCm39)	Y135N	probably damaging	Het
Sacs	T	C	14: 61,429,849 (GRCm39)	V636A	probably benign	Het
Scyl2	A	T	10: 89,477,869 (GRCm39)	I710N	probably benign	Het
Sh3bp5	C	A	14: 31,099,452 (GRCm39)	R265L	probably benign	Het
Slc4a1	T	A	11: 102,249,903 (GRCm39)	I154F	probably damaging	Het
Snx11	A	G	11: 96,661,535 (GRCm39)	S157P	probably damaging	Het
Snx18	G	A	13: 113,753,383 (GRCm39)	Q517*	probably null	Het
Stard4	G	T	18: 33,336,678 (GRCm39)	N212K	probably damaging	Het
Strn3	A	G	12: 51,676,168 (GRCm39)	Y454H	probably damaging	Het
Stx17	A	T	4: 48,182,851 (GRCm39)		probably benign	Het
Tas2r121	G	A	6: 132,677,480 (GRCm39)	T164I	possibly damaging	Het
Tbc1d8	T	C	1: 39,428,490 (GRCm39)	Y485C	probably damaging	Het
Tmem45b	T	C	9: 31,340,380 (GRCm39)	M8V	probably damaging	Het
Usp28	T	C	9: 48,948,501 (GRCm39)	F844L	probably damaging	Het
Usp32	T	A	11: 84,908,544 (GRCm39)	N1054I	probably benign	Het
Xpa	T	A	4: 46,185,659 (GRCm39)	E106D	probably benign	Het
Zfp85	C	T	13: 67,896,974 (GRCm39)	C366Y	probably damaging	Het

Other mutations in Gcfc2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00229:Gcfc2	APN	6	81,912,996 (GRCm39)	missense	probably damaging	0.99
IGL00473:Gcfc2	APN	6	81,921,355 (GRCm39)	missense	probably damaging	1.00
IGL00497:Gcfc2	APN	6	81,934,951 (GRCm39)	missense	probably benign	0.08
IGL02135:Gcfc2	APN	6	81,918,381 (GRCm39)	missense	probably damaging	1.00
R0138:Gcfc2	UTSW	6	81,926,935 (GRCm39)	missense	probably damaging	1.00
R0208:Gcfc2	UTSW	6	81,920,444 (GRCm39)	missense	probably null	0.91
R0467:Gcfc2	UTSW	6	81,900,863 (GRCm39)	missense	possibly damaging	0.56
R1105:Gcfc2	UTSW	6	81,916,434 (GRCm39)	missense	probably damaging	1.00
R1521:Gcfc2	UTSW	6	81,900,793 (GRCm39)	missense	probably benign	0.14
R1602:Gcfc2	UTSW	6	81,921,401 (GRCm39)	missense	probably damaging	1.00
R1846:Gcfc2	UTSW	6	81,933,873 (GRCm39)	missense	probably damaging	0.99
R2091:Gcfc2	UTSW	6	81,920,460 (GRCm39)	missense	probably damaging	1.00
R2110:Gcfc2	UTSW	6	81,900,759 (GRCm39)	missense	probably benign	0.01
R2111:Gcfc2	UTSW	6	81,900,759 (GRCm39)	missense	probably benign	0.01
R2112:Gcfc2	UTSW	6	81,900,759 (GRCm39)	missense	probably benign	0.01
R2892:Gcfc2	UTSW	6	81,933,894 (GRCm39)	missense	possibly damaging	0.87
R3792:Gcfc2	UTSW	6	81,907,748 (GRCm39)	missense	probably benign	0.00
R4284:Gcfc2	UTSW	6	81,918,372 (GRCm39)	missense	probably damaging	1.00
R4304:Gcfc2	UTSW	6	81,919,988 (GRCm39)	missense	probably damaging	1.00
R4691:Gcfc2	UTSW	6	81,918,408 (GRCm39)	nonsense	probably null
R5046:Gcfc2	UTSW	6	81,925,316 (GRCm39)	missense	probably benign	0.12
R5233:Gcfc2	UTSW	6	81,930,271 (GRCm39)	missense	probably damaging	1.00
R5307:Gcfc2	UTSW	6	81,921,367 (GRCm39)	missense	probably damaging	0.97
R5929:Gcfc2	UTSW	6	81,923,580 (GRCm39)	missense	probably damaging	1.00
R6339:Gcfc2	UTSW	6	81,923,477 (GRCm39)	missense	probably damaging	1.00
R6485:Gcfc2	UTSW	6	81,916,528 (GRCm39)	missense	probably damaging	1.00
R6931:Gcfc2	UTSW	6	81,919,966 (GRCm39)	missense	probably benign	0.36
R6948:Gcfc2	UTSW	6	81,910,734 (GRCm39)	missense	probably benign	0.01
R7392:Gcfc2	UTSW	6	81,919,993 (GRCm39)	critical splice donor site	probably null
R7423:Gcfc2	UTSW	6	81,923,541 (GRCm39)	missense	probably damaging	1.00
R7509:Gcfc2	UTSW	6	81,930,256 (GRCm39)	missense	probably damaging	1.00
R7713:Gcfc2	UTSW	6	81,918,371 (GRCm39)	missense	probably damaging	1.00
R8089:Gcfc2	UTSW	6	81,902,771 (GRCm39)	missense	probably damaging	1.00
R8249:Gcfc2	UTSW	6	81,933,932 (GRCm39)	missense	probably benign	0.02
R8366:Gcfc2	UTSW	6	81,900,782 (GRCm39)	missense	probably benign	0.05
R8553:Gcfc2	UTSW	6	81,912,944 (GRCm39)	missense	probably benign	0.01
R8560:Gcfc2	UTSW	6	81,900,863 (GRCm39)	missense	possibly damaging	0.56
R8779:Gcfc2	UTSW	6	81,925,298 (GRCm39)	missense	probably benign	0.00
R8915:Gcfc2	UTSW	6	81,918,347 (GRCm39)	missense	probably benign	0.36
R8924:Gcfc2	UTSW	6	81,909,879 (GRCm39)	missense	probably damaging	1.00
R9687:Gcfc2	UTSW	6	81,918,323 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGAACATTAGAACCAAAGCGGC -3'
(R):5'- TTATTAGAGGTGTGGATGCCCC -3'

Sequencing Primer
(F):5'- AATGCTGTCAGTACATGATGTGTTCC -3'
(R):5'- TGTGGATGCCCCTGCTG -3'

Posted On

2016-10-06